Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Reverse (-)

26396597 .. 26401522

Gene Structure 4926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGGAAAGCTGTCGCTGGCCTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTGAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTCCCACAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTGTCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCTGGTCAGCAATCACTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCTTGGCTCCTTACTACGTACCTTGATGGTGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

176

Amino Acids

18.99

Weight (kDa)

4.94

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	8 - 167	3.1e-46	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	418
AciI	CCGC	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	26, 446
AfiI	CCNNNNNNNGG	2 cut(s)	410, 429
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	82, 194, 210, 224, 229
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	216, 409
AluBI	AGCT	3 cut(s)	11, 43, 189
AluI	AGCT	3 cut(s)	11, 43, 189
Alw26I	GTCTC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	19, 151
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
Asp700I	GAANNNNTTC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	152, 420
AsuHPI	GGTGA	3 cut(s)	309, 425, 467
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	146, 383, 446, 473
BciT130I	CCWGG	2 cut(s)	218, 411
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	218, 411
Bme18I	GGWCC	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	152, 420
BmiI	GGNNCC	4 cut(s)	238, 402, 422, 434
BmrFI	CCNGG	2 cut(s)	218, 411
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	41, 188
BmtI	GCTAGC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	418
BpuEI	CTTGAG	2 cut(s)	352, 454
BsaAI	YACGTR	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 429
Bse1I	ACTGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	218, 411
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	410, 429
BseMII	CTCAG	2 cut(s)	30, 349
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	2 cut(s)	21, 153
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	410, 429
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	21, 153
Bso31I	GGTCTC	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	271, 457, 523
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	2 cut(s)	21, 153
BspCNI	CTCAG	2 cut(s)	31, 348
BspLI	GGNNCC	4 cut(s)	238, 402, 422, 434
BspMAI	CTGCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	271, 457, 523
Bst2UI	CCWGG	2 cut(s)	218, 411
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	19, 187
BstDEI	CTNAG	2 cut(s)	39, 335
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	274, 460, 526
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	3 cut(s)	271, 457, 523
BstNI	CCWGG	2 cut(s)	218, 411
BstSCI	CCNGG	2 cut(s)	216, 409
BstSFI	CTRYAG	1 cut(s)	344
BstSNI	TACGTA	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	21, 153
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 181
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	19, 187
Cfr13I	GGNCC	2 cut(s)	152, 420
Csp6I	GTAC	2 cut(s)	25, 445
CviJI	RGCY	7 cut(s)	11, 21, 43, 153, 189, 247, 433
CviKI_1	RGCY	7 cut(s)	11, 21, 43, 153, 189, 247, 433
CviQI	GTAC	2 cut(s)	25, 445
DdeI	CTNAG	2 cut(s)	39, 335
DpnI	GATC	3 cut(s)	273, 459, 525
DpnII	GATC	3 cut(s)	271, 457, 523
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	259
Eco105I	TACGTA	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	216, 409
FaiI	YATR	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	21, 153
HapII	CCGG	1 cut(s)	150
HinfI	GANTC	4 cut(s)	213, 306, 465, 511
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	3 cut(s)	309, 425, 467
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	5 cut(s)	40, 123, 132, 200, 464
Hpy188III	TCNNGA	2 cut(s)	210, 369
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	216, 227, 500
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	4 cut(s)	32, 179, 346, 500
HpyF3I	CTNAG	2 cut(s)	39, 335
HpySE526I	ACGT	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	271, 457, 523
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	41, 188
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	3 cut(s)	273, 459, 525
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	3 cut(s)	271, 457, 523
MboII	GAAGA	1 cut(s)	27
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	5 cut(s)	93, 105, 126, 224, 310
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	3 cut(s)	343, 351, 525
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	96, 396
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	218, 411
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	218, 411
NdeII	GATC	3 cut(s)	271, 457, 523
NheI	GCTAGC	1 cut(s)	185
NlaIV	GGNNCC	4 cut(s)	238, 402, 422, 434
NmuCI	GTSAC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	213, 306, 465
PflFI	GACNNNGTC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
Ppu21I	YACGTR	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	216, 409
PspGI	CCWGG	2 cut(s)	216, 409
PspN4I	GGNNCC	4 cut(s)	238, 402, 422, 434
PspPI	GGNCC	2 cut(s)	152, 420
PstI	CTGCAG	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	26, 446
RsaNI	GTAC	2 cut(s)	25, 445
SaqAI	TTAA	2 cut(s)	96, 396
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	271, 457, 523
Sau96I	GGNCC	2 cut(s)	152, 420
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	218, 411
SfaNI	GCATC	2 cut(s)	41, 188
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	3 cut(s)	367, 395, 469
SmoI	CTYRAG	3 cut(s)	367, 395, 469
SnaBI	TACGTA	1 cut(s)	444
Sse9I	AATT	5 cut(s)	93, 105, 126, 224, 310
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	216, 409
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	93, 105, 126, 224, 310
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	213, 306, 465
Tru1I	TTAA	2 cut(s)	96, 396
Tru9I	TTAA	2 cut(s)	96, 396
TscAI	CASTG	2 cut(s)	34, 181
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	315
TspRI	CASTG	2 cut(s)	34, 181
Tth111I	GACNNNGTC	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.