Rh7BG253500

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011205
Physical Location & Seq
Reverse (-)
22996759 .. 23000672
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG253500.1

Sequence Viewer

Length: 1062 bp
ATGGCTCTCAATCTCGTCTTCACCTCACACTCCTCTCTCTTCTCCAAACCCCTCACATTTCCAACCCCAAAACCCCAATCCCTCTCACTACTCTCTCTCTCCTCCCCAAACCCAAACCCTAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGACACCCCCACCGACGGCGACCGTCCGGCGGCGAAAATCACCGACGAGTGGGGCGAGGCGGCCGAGCCGGAGCCGGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGCTGATGAGGCCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAGGAGGTGGATTCTAAGCTCACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTCGTGGAGTTGGTTAACCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTGAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTCCCACAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTGTCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCCGGTCAGCAATCACTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCTTGGCTTCTTACTACGTACCTTGATGGCGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA

Protein Analysis

353

Amino Acids

37.93

Weight (kDa)

4.37

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 129 - 344 1.1e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 584
AccB1I GGYRCC 2 cut(s) 508, 767
AccBSI CCGCTC 3 cut(s) 150, 458, 949
AccI GTMKAC 1 cut(s) 251
AciI CCGC 7 cut(s) 142, 148, 194, 224, 458, 491, 949
AcoI YGGCCR 2 cut(s) 225, 336
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 2 cut(s) 557, 977
AfiI CCNNNNNNNGG 6 cut(s) 179, 193, 213, 487, 941, 960
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 5 cut(s) 613, 725, 741, 755, 760
AhdI GACNNNNNGTC 1 cut(s) 790
AjnI CCWGG 2 cut(s) 747, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 7 cut(s) 130, 302, 344, 379, 388, 574, 720
AluI AGCT 7 cut(s) 130, 302, 344, 379, 388, 574, 720
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 1022
Ama87I CYCGRG 2 cut(s) 245, 523
AoxI GGCC 5 cut(s) 225, 309, 336, 438, 682
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 2 cut(s) 853, 885
Asp700I GAANNNNTTC 1 cut(s) 736
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 268, 438, 683, 951
AsuC2I CCSGG 3 cut(s) 442, 524, 525
AsuHPI GGTGA 6 cut(s) 13, 196, 289, 463, 840, 956
AsuNHI GCTAGC 1 cut(s) 716
AvaI CYCGRG 2 cut(s) 245, 523
AvaII GGWCC 2 cut(s) 268, 951
BanI GGYRCC 2 cut(s) 508, 767
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 602
BccI CCATC 5 cut(s) 530, 677, 914, 977, 1004
BceAI ACGGC 2 cut(s) 196, 296
BciT130I CCWGG 2 cut(s) 749, 942
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 3 cut(s) 442, 524, 525
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 1 cut(s) 717
BfmI CTRYAG 1 cut(s) 875
BfoI RGCGCY 1 cut(s) 512
BfrI CTTAAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 584
BisI GCNGC 4 cut(s) 195, 225, 492, 591
BlsI GCNGC 4 cut(s) 196, 226, 493, 592
Bme1390I CCNGG 5 cut(s) 442, 524, 525, 749, 942
Bme18I GGWCC 2 cut(s) 268, 951
BmeRI GACNNNNNGTC 1 cut(s) 790
BmeT110I CYCGRG 2 cut(s) 245, 523
BmgT120I GGNCC 4 cut(s) 268, 438, 683, 951
BmiI GGNNCC 7 cut(s) 237, 243, 270, 510, 769, 933, 953
BmrFI CCNGG 5 cut(s) 442, 524, 525, 749, 942
BmrI ACTGGG 2 cut(s) 553, 949
BmsI GCATC 2 cut(s) 572, 719
BmtI GCTAGC 1 cut(s) 720
BmuI ACTGGG 2 cut(s) 553, 949
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 883, 985
BpuMI CCSGG 3 cut(s) 442, 524, 525
BsaAI YACGTR 1 cut(s) 975
BsaBI GATNNNNATC 1 cut(s) 987
BsaHI GRCGYC 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 1022
BsaJI CCNNGG 3 cut(s) 312, 523, 524
BsaWI WCCGGW 2 cut(s) 274, 911
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 6 cut(s) 179, 193, 213, 487, 941, 960
Bse1I ACTGG 3 cut(s) 481, 548, 955
Bse8I GATNNNNATC 1 cut(s) 987
BseBI CCWGG 2 cut(s) 749, 942
BseDI CCNNGG 3 cut(s) 312, 523, 524
BseGI GGATG 1 cut(s) 1015
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 6 cut(s) 179, 193, 213, 487, 941, 960
BseMII CTCAG 5 cut(s) 336, 342, 375, 561, 880
BseNI ACTGG 3 cut(s) 481, 548, 955
BseRI GAGGAG 6 cut(s) 22, 91, 124, 142, 312, 377
BseX3I CGGCCG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 602
Bsh1285I CGRYCG 2 cut(s) 187, 228
BshFI GGCC 5 cut(s) 227, 311, 338, 440, 684
BshNI GGYRCC 2 cut(s) 508, 767
BsiEI CGRYCG 2 cut(s) 187, 228
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 2 cut(s) 245, 523
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 6 cut(s) 179, 193, 213, 487, 941, 960
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 5 cut(s) 227, 311, 338, 440, 684
Bso31I GGTCTC 1 cut(s) 1022
BsoBI CYCGRG 2 cut(s) 245, 523
Bsp1286I GDGCHC 2 cut(s) 246, 359
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 3 cut(s) 802, 988, 1054
BspACI CCGC 7 cut(s) 142, 148, 194, 224, 458, 491, 949
BspANI GGCC 5 cut(s) 227, 311, 338, 440, 684
BspCNI CTCAG 5 cut(s) 337, 343, 376, 562, 879
BspLI GGNNCC 7 cut(s) 237, 243, 270, 510, 769, 933, 953
BspMAI CTGCAG 1 cut(s) 879
BspMI ACCTGC 1 cut(s) 584
BspOI GCTAGC 1 cut(s) 720
BspT107I GGYRCC 2 cut(s) 508, 767
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 1022
BsrBI CCGCTC 3 cut(s) 150, 458, 949
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 3 cut(s) 481, 548, 955
BssECI CCNNGG 3 cut(s) 312, 523, 524
BssMI GATC 3 cut(s) 802, 988, 1054
BssNI GRCGYC 1 cut(s) 509
Bst2UI CCWGG 2 cut(s) 749, 942
Bst4CI ACNGT 2 cut(s) 188, 555
Bst6I CTCTTC 2 cut(s) 44, 386
BstACI GRCGYC 1 cut(s) 509
BstAFI CTTAAG 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 1 cut(s) 975
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 6 cut(s) 345, 351, 375, 384, 570, 866
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 1015
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 3 cut(s) 805, 991, 1057
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 3 cut(s) 802, 988, 1054
BstMCI CGRYCG 2 cut(s) 187, 228
BstMWI GCNNNNNNNGC 2 cut(s) 308, 385
BstNI CCWGG 2 cut(s) 749, 942
BstSCI CCNGG 5 cut(s) 440, 522, 523, 747, 940
BstSFI CTRYAG 1 cut(s) 875
BstSNI TACGTA 1 cut(s) 975
BstV1I GCAGC 1 cut(s) 602
BstV2I GAAGAC 1 cut(s) 10
BstZI CGGCCG 1 cut(s) 225
BsuRI GGCC 5 cut(s) 227, 311, 338, 440, 684
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 1015
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 3 cut(s) 381, 558, 712
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 1 cut(s) 718
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 268, 438, 683, 951
Cfr9I CCCGGG 1 cut(s) 523
Csp6I GTAC 2 cut(s) 556, 976
CviQI GTAC 2 cut(s) 556, 976
DdeI CTNAG 6 cut(s) 345, 351, 375, 384, 570, 866
DinI GGCGCC 1 cut(s) 510
DpnI GATC 3 cut(s) 804, 990, 1056
DpnII GATC 3 cut(s) 802, 988, 1054
DriI GACNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 2 cut(s) 225, 336
EagI CGGCCG 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 44, 386
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 2 cut(s) 44, 386
EciI GGCGGA 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 225
Eco105I TACGTA 1 cut(s) 975
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 1022
Eco47I GGWCC 2 cut(s) 268, 951
Eco52I CGGCCG 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 2 cut(s) 245, 523
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 747, 940
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 510
EheI GGCGCC 1 cut(s) 510
FaiI YATR 2 cut(s) 417, 788
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 1 cut(s) 433
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 195, 225, 492, 591
FokI GGATG 1 cut(s) 1022
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 4 cut(s) 195, 225, 492, 591
FspBI CTAG 1 cut(s) 717
GlaI GCGC 1 cut(s) 510
GluI GCNGC 4 cut(s) 195, 225, 492, 591
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 5 cut(s) 227, 311, 338, 440, 684
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 509
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 252, 478
HindII GTYRAC 2 cut(s) 252, 478
HinfI GANTC 8 cut(s) 248, 263, 371, 496, 744, 837, 996, 1042
HpaI GTTAAC 1 cut(s) 478
HphI GGTGA 6 cut(s) 13, 196, 289, 463, 840, 956
Hpy166II GTNNAC 4 cut(s) 252, 280, 478, 558
Hpy188I TCNGA 9 cut(s) 163, 262, 268, 448, 571, 654, 663, 731, 995
Hpy188III TCNNGA 3 cut(s) 322, 741, 900
Hpy8I GTNNAC 4 cut(s) 252, 280, 478, 558
Hpy99I CGWCG 4 cut(s) 167, 182, 212, 517
HpyAV CCTTC 4 cut(s) 148, 747, 758, 1031
HpyCH4III ACNGT 2 cut(s) 188, 555
HpyCH4IV ACGT 2 cut(s) 410, 974
HpyCH4V TGCA 4 cut(s) 563, 710, 877, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 385
HpyF3I CTNAG 6 cut(s) 345, 351, 375, 384, 570, 866
HpySE526I ACGT 2 cut(s) 410, 974
Hsp92I GRCGYC 1 cut(s) 509
HspAI GCGC 1 cut(s) 509
KasI GGCGCC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 1054
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 3 cut(s) 802, 988, 1054
LmnI GCTCC 4 cut(s) 155, 235, 241, 299
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 2 cut(s) 572, 719
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 410, 974
MaeIII GTNAC 1 cut(s) 846
MalI GATC 3 cut(s) 804, 990, 1056
MbiI CCGCTC 3 cut(s) 150, 458, 949
MboI GATC 3 cut(s) 802, 988, 1054
MboII GAAGA 4 cut(s) 10, 31, 403, 558
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 2 cut(s) 246, 359
MluCI AATT 6 cut(s) 425, 624, 636, 657, 755, 841
Mly113I GGCGCC 1 cut(s) 509
MlyI GAGTC 2 cut(s) 257, 1051
MmeI TCCRAC 4 cut(s) 86, 186, 426, 465
MroXI GAANNNNTTC 1 cut(s) 736
MseI TTAA 3 cut(s) 477, 627, 927
MspCI CTTAAG 1 cut(s) 926
MspR9I CCNGG 5 cut(s) 442, 524, 525, 749, 942
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 2 cut(s) 749, 942
MwoI GCNNNNNNNGC 2 cut(s) 308, 385
NarI GGCGCC 1 cut(s) 509
NciI CCSGG 3 cut(s) 442, 524, 525
NdeII GATC 3 cut(s) 802, 988, 1054
NheI GCTAGC 1 cut(s) 716
NlaIV GGNNCC 7 cut(s) 237, 243, 270, 510, 769, 933, 953
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 736
PfeI GAWTC 6 cut(s) 263, 371, 496, 744, 837, 996
PflFI GACNNNGTC 1 cut(s) 955
PkrI GCNGC 4 cut(s) 196, 226, 493, 592
PleI GAGTC 2 cut(s) 256, 1050
PluTI GGCGCC 1 cut(s) 512
PpsI GAGTC 2 cut(s) 256, 1050
Ppu21I YACGTR 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 747, 940
PspGI CCWGG 2 cut(s) 747, 940
PspN4I GGNNCC 7 cut(s) 237, 243, 270, 510, 769, 933, 953
PspPI GGNCC 4 cut(s) 268, 438, 683, 951
PstI CTGCAG 1 cut(s) 879
PsyI GACNNNGTC 1 cut(s) 955
RsaI GTAC 2 cut(s) 557, 977
RsaNI GTAC 2 cut(s) 556, 976
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 477, 627, 927
SatI GCNGC 4 cut(s) 195, 225, 492, 591
Sau3AI GATC 3 cut(s) 802, 988, 1054
Sau96I GGNCC 4 cut(s) 268, 438, 683, 951
SchI GAGTC 2 cut(s) 257, 1051
ScrFI CCNGG 5 cut(s) 442, 524, 525, 749, 942
SduI GDGCHC 2 cut(s) 246, 359
SfaNI GCATC 2 cut(s) 572, 719
SfcI CTRYAG 1 cut(s) 875
SfoI GGCGCC 1 cut(s) 510
SinI GGWCC 2 cut(s) 268, 951
SmaI CCCGGG 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 898, 926, 1000
SmoI CTYRAG 3 cut(s) 898, 926, 1000
SnaBI TACGTA 1 cut(s) 975
Sse9I AATT 6 cut(s) 425, 624, 636, 657, 755, 841
SsiI CCGC 7 cut(s) 142, 148, 194, 224, 458, 491, 949
SspDI GGCGCC 1 cut(s) 508
SspI AATATT 1 cut(s) 825
SspMI CTAG 1 cut(s) 717
StyD4I CCNGG 5 cut(s) 440, 522, 523, 747, 940
TaaI ACNGT 2 cut(s) 188, 555
TaiI ACGT 2 cut(s) 413, 977
TaqI TCGA 2 cut(s) 251, 618
TasI AATT 6 cut(s) 425, 624, 636, 657, 755, 841
TatI WGTACW 1 cut(s) 555
TauI GCSGC 3 cut(s) 197, 227, 494
TfiI GAWTC 6 cut(s) 263, 371, 496, 744, 837, 996
Tru1I TTAA 3 cut(s) 477, 627, 927
Tru9I TTAA 3 cut(s) 477, 627, 927
TscAI CASTG 3 cut(s) 388, 565, 712
TseFI GTSAC 1 cut(s) 846
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 846
TspGWI ACGGA 2 cut(s) 374, 530
TspMI CCCGGG 1 cut(s) 523
TspRI CASTG 3 cut(s) 388, 565, 712
Tth111I GACNNNGTC 1 cut(s) 955
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 268, 951
XapI RAATTY 1 cut(s) 755
XmaI CCCGGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 736
XspI CTAG 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.