Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Reverse (-)

3090194 .. 3093021

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1025700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTCTGAATCTCATCTTCACCTCACACTCCTCCTCCCCTCTCCTCTCCAAAAACCTCCTCAATTCCCCATCCTCATTTCCAACCCCAAAGTTCCAATCTTTCTCTCTCCTCTCCCCAAACCCTAATCCCAAACTCCCCTCCCTCCGCCTACGCGCCTCTCCCTCCGGCGACACCCCCACCGATGGCGACCGCCCCACGAAGATTACTGACGAGTGGGGCGAGAAGGCCGACACGGAGCCGGAGCCCCGGTCCAAACTCTCCGAATCGGACCCTCCGCAGAACGAGGACGAATGGGGAGGCGGAGGAGATGGGGTTGTAGAAGTTGGGAATGGAAGTGCGGCCAAAACTGAGGTTGCCATCGAGGAGAAGGTGGATGGTAAGCTCAGTGAGCTCAAGAGGGGTTTGGTGGACACGGTTTATGGGACTGAATTCGGGTTCCGGGCCGGGTCCGAGGTGAGAGCGGAGGCTTTAGAGTTCGTTAGCCAGTTGGAGGCGGCGAATCCCAACCCGGCTCCGACGGAGAATCCGGGCCTTCTTGATGGCAACTGGGTTTTGCTGTACACTGCATCATCTGAGCTGTTGCCACTACTCGCAGCAGGTGGCACACCGTTGTTGAAGGTAAATAAAATAACCCAAGCGATCAACAGCAGCAGCCTGACTATTTTGAACTCCACCACGCTGTCTAGCCCTTTTGCTAGTTTCTCGTTCAGTGCATCTGCTAGCTTTGAAGTTAGAAGTCCGTCAAGAATCCAGGTGGAATTCAAGGAAGGCAGCTTTCAGCCTCCGGAGATTAAGTCAAGCGTTGATCTCCCTCAAGAAGTGGAAATCTTTGGGCAGAAAATCAATTTATCACCCGTCCAGCAAACTCTCAATCCTTTGCAGGATGCTGTTGCAGGTATCTCTAGGACCATTTCTGGTCAGCCACCGCTTAAGGTTCCCGTTCCAGGTGAACGGACCAAGTCTTGGCTTCTTATTACATACCTTGATGAGGATCTTCGGATCTCAAGGGGGGATGGTGGTCTTTTTGTGCTTGCTAGAGAAGGGAGCCCGCTTTTATATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

356

Amino Acids

38.05

Weight (kDa)

4.75

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	131 - 346	1.5e-69	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	2 cut(s)	590, 887
AccB7I	CCANNNNNTGG	1 cut(s)	966
AccBSI	CCGCTC	1 cut(s)	464
AccII	CGCG	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	9 cut(s)	148, 193, 278, 303, 341, 464, 497, 929, 1052
AclWI	GGATC	2 cut(s)	1002, 1010
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	431, 761
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	5 cut(s)	185, 493, 947, 966, 991
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	4 cut(s)	619, 670, 731, 766
AjnI	CCWGG	2 cut(s)	753, 946
AluBI	AGCT	5 cut(s)	385, 394, 580, 726, 777
AluI	AGCT	5 cut(s)	385, 394, 580, 726, 777
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	1002, 1010
Aor13HI	TCCGGA	1 cut(s)	787
AoxI	GGCC	4 cut(s)	228, 342, 444, 532
ApeKI	GCWGC	4 cut(s)	596, 651, 654, 774
ApoI	RAATTY	2 cut(s)	431, 761
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	7 cut(s)	252, 271, 444, 450, 532, 909, 957
AsuC2I	CCSGG	5 cut(s)	250, 443, 448, 512, 531
AsuHPI	GGTGA	4 cut(s)	13, 469, 846, 962
AsuNHI	GCTAGC	1 cut(s)	722
AvaII	GGWCC	5 cut(s)	252, 271, 450, 909, 957
BanII	GRGCYC	3 cut(s)	249, 396, 1052
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	608, 663, 666, 786
BccI	CCATC	7 cut(s)	79, 179, 305, 368, 371, 536, 1010
BciT130I	CCWGG	2 cut(s)	755, 948
BcnI	CCSGG	5 cut(s)	250, 443, 448, 512, 531
BfaI	CTAG	5 cut(s)	687, 699, 723, 906, 1038
BfrI	CTTAAG	1 cut(s)	932
BfuAI	ACCTGC	2 cut(s)	590, 887
BisI	GCNGC	6 cut(s)	342, 498, 597, 652, 655, 775
BlsI	GCNGC	6 cut(s)	343, 499, 598, 653, 656, 776
Bme1390I	CCNGG	7 cut(s)	250, 443, 448, 512, 531, 755, 948
Bme18I	GGWCC	5 cut(s)	252, 271, 450, 909, 957
BmgT120I	GGNCC	7 cut(s)	252, 271, 444, 450, 532, 909, 957
BmiI	GGNNCC	8 cut(s)	240, 246, 273, 440, 451, 516, 939, 1049
BmrFI	CCNGG	7 cut(s)	250, 443, 448, 512, 531, 755, 948
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	3 cut(s)	578, 725, 877
BmtI	GCTAGC	1 cut(s)	726
BmuI	ACTGGG	1 cut(s)	559
BpuEI	CTTGAG	3 cut(s)	380, 801, 991
BpuMI	CCSGG	5 cut(s)	250, 443, 448, 512, 531
BsaBI	GATNNNNATC	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	248, 453
BsaWI	WCCGGW	1 cut(s)	787
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 50, 236, 266, 300, 330, 782, 812
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 493, 947, 966, 991
Bse1I	ACTGG	2 cut(s)	487, 554
Bse8I	GATNNNNATC	1 cut(s)	993
BseAI	TCCGGA	1 cut(s)	787
BseBI	CCWGG	2 cut(s)	755, 948
BseDI	CCNNGG	2 cut(s)	248, 453
BseGI	GGATG	4 cut(s)	71, 382, 892, 1021
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	5 cut(s)	185, 493, 947, 966, 991
BseMII	CTCAG	3 cut(s)	342, 400, 567
BseNI	ACTGG	2 cut(s)	487, 554
BseRI	GAGGAG	7 cut(s)	22, 25, 35, 50, 101, 321, 380
BseXI	GCAGC	4 cut(s)	608, 663, 666, 786
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	230, 344, 446, 534
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	8 cut(s)	168, 242, 250, 442, 447, 512, 530, 788
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	5 cut(s)	185, 493, 947, 966, 991
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	230, 344, 446, 534
Bsp1286I	GDGCHC	3 cut(s)	249, 396, 1052
Bsp13I	TCCGGA	1 cut(s)	787
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	642, 808, 994, 1002
BspACI	CCGC	9 cut(s)	148, 193, 278, 303, 341, 464, 497, 929, 1052
BspANI	GGCC	4 cut(s)	230, 344, 446, 534
BspCNI	CTCAG	3 cut(s)	343, 399, 568
BspEI	TCCGGA	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	8 cut(s)	240, 246, 273, 440, 451, 516, 939, 1049
BspMI	ACCTGC	2 cut(s)	590, 887
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	2 cut(s)	1002, 1010
BspTI	CTTAAG	1 cut(s)	932
BsrBI	CCGCTC	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	487, 554
BssECI	CCNNGG	2 cut(s)	248, 453
BssMI	GATC	4 cut(s)	642, 808, 994, 1002
Bst2UI	CCWGG	2 cut(s)	755, 948
Bst4CI	ACNGT	2 cut(s)	418, 612
BstAFI	CTTAAG	1 cut(s)	932
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	724, 1035, 1052
BstDEI	CTNAG	3 cut(s)	351, 386, 576
BstENI	CCTNNNNNAGG	1 cut(s)	989
BstF5I	GGATG	4 cut(s)	71, 382, 892, 1021
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	645, 811, 997, 1005
BstMBI	GATC	4 cut(s)	642, 808, 994, 1002
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	755, 948
BstSCI	CCNGG	7 cut(s)	248, 441, 446, 510, 529, 753, 946
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	608, 663, 666, 786
BstX2I	RGATCY	2 cut(s)	994, 1002
BstYI	RGATCY	2 cut(s)	994, 1002
BsuRI	GGCC	4 cut(s)	230, 344, 446, 534
BtsCI	GGATG	4 cut(s)	71, 382, 892, 1021
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	394, 564, 718
BveI	ACCTGC	2 cut(s)	590, 887
Cac8I	GCNNGC	3 cut(s)	724, 1035, 1052
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	7 cut(s)	252, 271, 444, 450, 532, 909, 957
Csp6I	GTAC	1 cut(s)	562
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	3 cut(s)	351, 386, 576
DpnI	GATC	4 cut(s)	644, 810, 996, 1004
DpnII	GATC	4 cut(s)	642, 808, 994, 1002
EaeI	YGGCCR	1 cut(s)	342
EciI	GGCGGA	2 cut(s)	137, 318
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	3 cut(s)	249, 396, 1052
Eco47I	GGWCC	5 cut(s)	252, 271, 450, 909, 957
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	989
EcoRI	GAATTC	2 cut(s)	431, 761
EcoRII	CCWGG	2 cut(s)	753, 946
EcoT38I	GRGCYC	3 cut(s)	249, 396, 1052
FaiI	YATR	3 cut(s)	423, 982, 1060
FaqI	GGGAC	1 cut(s)	439
FauI	CCCGC	1 cut(s)	1059
Fnu4HI	GCNGC	6 cut(s)	342, 498, 597, 652, 655, 775
FokI	GGATG	4 cut(s)	58, 389, 899, 1028
FriOI	GRGCYC	3 cut(s)	249, 396, 1052
Fsp4HI	GCNGC	6 cut(s)	342, 498, 597, 652, 655, 775
FspBI	CTAG	5 cut(s)	687, 699, 723, 906, 1038
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	6 cut(s)	342, 498, 597, 652, 655, 775
HaeIII	GGCC	4 cut(s)	230, 344, 446, 534
HapII	CCGG	8 cut(s)	168, 242, 250, 442, 447, 512, 530, 788
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	5 cut(s)	10, 266, 502, 526, 750
HpaII	CCGG	8 cut(s)	168, 242, 250, 442, 447, 512, 530, 788
HphI	GGTGA	4 cut(s)	13, 469, 846, 962
Hpy166II	GTNNAC	3 cut(s)	412, 564, 953
Hpy188I	TCNGA	7 cut(s)	9, 265, 271, 454, 519, 577, 1002
Hpy188III	TCNNGA	5 cut(s)	397, 539, 747, 788, 818
Hpy8I	GTNNAC	3 cut(s)	412, 564, 953
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	6 cut(s)	220, 364, 545, 613, 764, 1037
HpyCH4III	ACNGT	2 cut(s)	418, 612
HpyCH4V	TGCA	4 cut(s)	569, 716, 883, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	3 cut(s)	351, 386, 576
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	642, 808, 994, 1002
LmnI	GCTCC	4 cut(s)	238, 244, 520, 1047
Lsp1109I	GCAGC	4 cut(s)	608, 663, 666, 786
LweI	GCATC	3 cut(s)	578, 725, 877
MaeI	CTAG	5 cut(s)	687, 699, 723, 906, 1038
MalI	GATC	4 cut(s)	644, 810, 996, 1004
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	4 cut(s)	642, 808, 994, 1002
MboII	GAAGA	3 cut(s)	10, 214, 989
MflI	RGATCY	2 cut(s)	994, 1002
MhlI	GDGCHC	3 cut(s)	249, 396, 1052
MluCI	AATT	4 cut(s)	64, 431, 761, 847
MmeI	TCCRAC	3 cut(s)	107, 471, 542
MroI	TCCGGA	1 cut(s)	787
MseI	TTAA	2 cut(s)	795, 933
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	8 cut(s)	168, 242, 250, 442, 447, 512, 530, 788
MspR9I	CCNGG	7 cut(s)	250, 443, 448, 512, 531, 755, 948
MvaI	CCWGG	2 cut(s)	755, 948
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	5 cut(s)	250, 443, 448, 512, 531
NdeII	GATC	4 cut(s)	642, 808, 994, 1002
NheI	GCTAGC	1 cut(s)	722
NlaIV	GGNNCC	8 cut(s)	240, 246, 273, 440, 451, 516, 939, 1049
PaqCI	CACCTGC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	5 cut(s)	10, 266, 502, 526, 750
PflFI	GACNNNGTC	1 cut(s)	961
PflMI	CCANNNNNTGG	1 cut(s)	966
PkrI	GCNGC	6 cut(s)	343, 499, 598, 653, 656, 776
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	753, 946
PspGI	CCWGG	2 cut(s)	753, 946
PspN4I	GGNNCC	8 cut(s)	240, 246, 273, 440, 451, 516, 939, 1049
PspPI	GGNCC	7 cut(s)	252, 271, 444, 450, 532, 909, 957
PsuI	RGATCY	2 cut(s)	994, 1002
PsyI	GACNNNGTC	1 cut(s)	961
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	795, 933
SatI	GCNGC	6 cut(s)	342, 498, 597, 652, 655, 775
Sau3AI	GATC	4 cut(s)	642, 808, 994, 1002
Sau96I	GGNCC	7 cut(s)	252, 271, 444, 450, 532, 909, 957
ScrFI	CCNGG	7 cut(s)	250, 443, 448, 512, 531, 755, 948
SduI	GDGCHC	3 cut(s)	249, 396, 1052
SfaNI	GCATC	3 cut(s)	578, 725, 877
SinI	GGWCC	5 cut(s)	252, 271, 450, 909, 957
SmlI	CTYRAG	4 cut(s)	395, 816, 932, 1006
SmoI	CTYRAG	4 cut(s)	395, 816, 932, 1006
Sse9I	AATT	4 cut(s)	64, 431, 761, 847
SsiI	CCGC	9 cut(s)	148, 193, 278, 303, 341, 464, 497, 929, 1052
SspMI	CTAG	5 cut(s)	687, 699, 723, 906, 1038
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	7 cut(s)	248, 441, 446, 510, 529, 753, 946
TaaI	ACNGT	2 cut(s)	418, 612
TaqI	TCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	64, 431, 761, 847
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	2 cut(s)	344, 500
TfiI	GAWTC	5 cut(s)	10, 266, 502, 526, 750
Tru1I	TTAA	2 cut(s)	795, 933
Tru9I	TTAA	2 cut(s)	795, 933
TscAI	CASTG	3 cut(s)	394, 571, 718
TseI	GCWGC	4 cut(s)	596, 651, 654, 774
TspGWI	ACGGA	4 cut(s)	251, 536, 732, 970
TspRI	CASTG	3 cut(s)	394, 571, 718
Tth111I	GACNNNGTC	1 cut(s)	961
Van91I	CCANNNNNTGG	1 cut(s)	966
Vha464I	CTTAAG	1 cut(s)	932
VpaK11BI	GGWCC	5 cut(s)	252, 271, 450, 909, 957
XagI	CCTNNNNNAGG	1 cut(s)	989
XapI	RAATTY	2 cut(s)	431, 761
XspI	CTAG	5 cut(s)	687, 699, 723, 906, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.