RchiOBHm_Chr7g0211641

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011205
Physical Location & Seq
Reverse (-)
28756027 .. 28759646
3620 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18935

Sequence Viewer

Length: 1065 bp
ATGGCTCTCAATCTCGTCTTCACCTCACACTCTTCTCTCCTCTCCAAACCCCTCACATTTCCAACCCCAAAACCCCAATCCCTCTCACTACTCTCTCTCTCCTCCCCAAACCCTAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGACACCCCCACCGACGGCGACCGTCCGGCGGCCAAAATCACCGACGAGTGGGGCGAGGTGGCCGAGCCGGAGCCGGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGCTGATGAGGCCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAAGAGGTGGAGGAGGTCGATTCTAAGCTTACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTGGTGGAGTTGGTTAACCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTTGATAAAATTAACCAATCAATTGATACCAGCAGTCAGACAATTCTGAACACCATCACATTGTCCGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTCAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTCCCACAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTATCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCTGGTCAGCAATCACTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCTTGGCTTCTTACTACGTACCTTGATGGTGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA

Protein Analysis

354

Amino Acids

38.09

Weight (kDa)

4.35

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 130 - 345 3e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AccB1I GGYRCC 2 cut(s) 511, 770
AccBSI CCGCTC 3 cut(s) 144, 461, 952
AccI GTMKAC 1 cut(s) 245
AciI CCGC 6 cut(s) 136, 142, 188, 461, 494, 952
AcoI YGGCCR 3 cut(s) 189, 219, 330
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 2 cut(s) 560, 980
AfiI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 490, 944, 963
AflII CTTAAG 1 cut(s) 929
AgsI TTSAA 5 cut(s) 616, 728, 744, 758, 763
AhdI GACNNNNNGTC 1 cut(s) 793
AjnI CCWGG 2 cut(s) 750, 943
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 7 cut(s) 124, 296, 338, 382, 391, 577, 723
AluI AGCT 7 cut(s) 124, 296, 338, 382, 391, 577, 723
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 239, 526
AoxI GGCC 6 cut(s) 189, 219, 303, 330, 441, 685
ApeKI GCWGC 1 cut(s) 593
ArsI GACNNNNNNTTYG 2 cut(s) 856, 888
Asp700I GAANNNNTTC 1 cut(s) 739
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 4 cut(s) 262, 441, 686, 954
AsuC2I CCSGG 3 cut(s) 445, 527, 528
AsuHPI GGTGA 7 cut(s) 13, 190, 283, 466, 843, 959, 1001
AsuNHI GCTAGC 1 cut(s) 719
AvaI CYCGRG 2 cut(s) 239, 526
AvaII GGWCC 2 cut(s) 262, 954
BanI GGYRCC 2 cut(s) 511, 770
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 605
BccI CCATC 5 cut(s) 533, 680, 917, 980, 1007
BceAI ACGGC 2 cut(s) 190, 290
BciT130I CCWGG 2 cut(s) 752, 945
BclI TGATCA 1 cut(s) 1057
BcnI CCSGG 3 cut(s) 445, 527, 528
BcoDI GTCTC 1 cut(s) 1025
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 878
BfoI RGCGCY 1 cut(s) 515
BfrI CTTAAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 587
BisI GCNGC 3 cut(s) 189, 495, 594
BlsI GCNGC 3 cut(s) 190, 496, 595
Bme1390I CCNGG 5 cut(s) 445, 527, 528, 752, 945
Bme18I GGWCC 2 cut(s) 262, 954
BmeRI GACNNNNNGTC 1 cut(s) 793
BmeT110I CYCGRG 2 cut(s) 239, 526
BmgT120I GGNCC 4 cut(s) 262, 441, 686, 954
BmiI GGNNCC 7 cut(s) 231, 237, 264, 513, 772, 936, 956
BmrFI CCNGG 5 cut(s) 445, 527, 528, 752, 945
BmrI ACTGGG 2 cut(s) 556, 952
BmsI GCATC 2 cut(s) 575, 722
BmtI GCTAGC 1 cut(s) 723
BmuI ACTGGG 2 cut(s) 556, 952
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 886, 988
BpuMI CCSGG 3 cut(s) 445, 527, 528
BsaAI YACGTR 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 3 cut(s) 306, 526, 527
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 187, 207, 490, 944, 963
Bse1I ACTGG 3 cut(s) 484, 551, 958
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 752, 945
BseDI CCNNGG 3 cut(s) 306, 526, 527
BseGI GGATG 1 cut(s) 1018
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 490, 944, 963
BseMII CTCAG 5 cut(s) 330, 336, 378, 564, 883
BseNI ACTGG 3 cut(s) 484, 551, 958
BseRI GAGGAG 6 cut(s) 29, 91, 118, 136, 306, 380
BseXI GCAGC 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 6 cut(s) 191, 221, 305, 332, 443, 687
BshNI GGYRCC 2 cut(s) 511, 770
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 2 cut(s) 239, 526
BsiSI CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 490, 944, 963
BsmAI GTCTC 1 cut(s) 1025
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 6 cut(s) 191, 221, 305, 332, 443, 687
Bso31I GGTCTC 1 cut(s) 1025
BsoBI CYCGRG 2 cut(s) 239, 526
Bsp1286I GDGCHC 2 cut(s) 240, 353
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 3 cut(s) 805, 991, 1057
BspACI CCGC 6 cut(s) 136, 142, 188, 461, 494, 952
BspANI GGCC 6 cut(s) 191, 221, 305, 332, 443, 687
BspCNI CTCAG 5 cut(s) 331, 337, 379, 565, 882
BspLI GGNNCC 7 cut(s) 231, 237, 264, 513, 772, 936, 956
BspMAI CTGCAG 1 cut(s) 882
BspMI ACCTGC 1 cut(s) 587
BspOI GCTAGC 1 cut(s) 723
BspT107I GGYRCC 2 cut(s) 511, 770
BspTI CTTAAG 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 1025
BsrBI CCGCTC 3 cut(s) 144, 461, 952
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 3 cut(s) 484, 551, 958
BssECI CCNNGG 3 cut(s) 306, 526, 527
BssMI GATC 3 cut(s) 805, 991, 1057
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 752, 945
Bst4CI ACNGT 2 cut(s) 182, 558
Bst6I CTCTTC 3 cut(s) 37, 351, 389
BstACI GRCGYC 1 cut(s) 512
BstAFI CTTAAG 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 978
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 6 cut(s) 339, 345, 378, 387, 573, 869
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 1018
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 3 cut(s) 808, 994, 1060
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 3 cut(s) 805, 991, 1057
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 302, 388
BstNI CCWGG 2 cut(s) 752, 945
BstSCI CCNGG 5 cut(s) 443, 525, 526, 750, 943
BstSFI CTRYAG 1 cut(s) 878
BstSNI TACGTA 1 cut(s) 978
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 10
BsuRI GGCC 6 cut(s) 191, 221, 305, 332, 443, 687
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 1018
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 561, 715
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 721
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 4 cut(s) 262, 441, 686, 954
Cfr9I CCCGGG 1 cut(s) 526
Csp6I GTAC 2 cut(s) 559, 979
CviQI GTAC 2 cut(s) 559, 979
DdeI CTNAG 6 cut(s) 339, 345, 378, 387, 573, 869
DinI GGCGCC 1 cut(s) 513
DpnI GATC 3 cut(s) 807, 993, 1059
DpnII GATC 3 cut(s) 805, 991, 1057
DriI GACNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 3 cut(s) 189, 219, 330
Eam1104I CTCTTC 3 cut(s) 37, 351, 389
Eam1105I GACNNNNNGTC 1 cut(s) 793
EarI CTCTTC 3 cut(s) 37, 351, 389
EciI GGCGGA 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 978
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 1025
Eco47I GGWCC 2 cut(s) 262, 954
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 239, 526
EcoRII CCWGG 2 cut(s) 750, 943
EcoT38I GRGCYC 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
FaiI YATR 2 cut(s) 420, 791
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 436
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 189, 495, 594
FokI GGATG 1 cut(s) 1025
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 189, 495, 594
FspBI CTAG 1 cut(s) 720
GlaI GCGC 1 cut(s) 513
GluI GCNGC 3 cut(s) 189, 495, 594
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 6 cut(s) 191, 221, 305, 332, 443, 687
HapII CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 512
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 2 cut(s) 246, 481
HindII GTYRAC 2 cut(s) 246, 481
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 8 cut(s) 242, 257, 374, 499, 747, 840, 999, 1045
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
HphI GGTGA 7 cut(s) 13, 190, 283, 466, 843, 959, 1001
Hpy166II GTNNAC 4 cut(s) 246, 274, 481, 561
Hpy188I TCNGA 9 cut(s) 157, 256, 262, 451, 574, 657, 666, 734, 998
Hpy188III TCNNGA 3 cut(s) 316, 744, 903
Hpy8I GTNNAC 4 cut(s) 246, 274, 481, 561
Hpy99I CGWCG 4 cut(s) 161, 176, 206, 520
HpyAV CCTTC 4 cut(s) 142, 750, 761, 1034
HpyCH4III ACNGT 2 cut(s) 182, 558
HpyCH4IV ACGT 2 cut(s) 413, 977
HpyCH4V TGCA 4 cut(s) 566, 713, 880, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 388
HpyF3I CTNAG 6 cut(s) 339, 345, 378, 387, 573, 869
HpySE526I ACGT 2 cut(s) 413, 977
Hsp92I GRCGYC 1 cut(s) 512
HspAI GCGC 1 cut(s) 512
KasI GGCGCC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 1057
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 805, 991, 1057
LmnI GCTCC 4 cut(s) 149, 229, 235, 293
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 2 cut(s) 575, 722
MaeI CTAG 1 cut(s) 720
MaeII ACGT 2 cut(s) 413, 977
MaeIII GTNAC 1 cut(s) 849
MalI GATC 3 cut(s) 807, 993, 1059
MbiI CCGCTC 3 cut(s) 144, 461, 952
MboI GATC 3 cut(s) 805, 991, 1057
MboII GAAGA 5 cut(s) 10, 24, 368, 406, 561
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 240, 353
MluCI AATT 6 cut(s) 428, 627, 639, 660, 758, 844
Mly113I GGCGCC 1 cut(s) 512
MlyI GAGTC 2 cut(s) 251, 1054
MmeI TCCRAC 4 cut(s) 86, 180, 429, 468
MroXI GAANNNNTTC 1 cut(s) 739
MseI TTAA 3 cut(s) 480, 630, 930
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
MspR9I CCNGG 5 cut(s) 445, 527, 528, 752, 945
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 2 cut(s) 752, 945
MwoI GCNNNNNNNGC 2 cut(s) 302, 388
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 3 cut(s) 445, 527, 528
NdeII GATC 3 cut(s) 805, 991, 1057
NheI GCTAGC 1 cut(s) 719
NlaIV GGNNCC 7 cut(s) 231, 237, 264, 513, 772, 936, 956
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 6 cut(s) 257, 374, 499, 747, 840, 999
PflFI GACNNNGTC 1 cut(s) 958
PkrI GCNGC 3 cut(s) 190, 496, 595
PleI GAGTC 2 cut(s) 250, 1053
PluTI GGCGCC 1 cut(s) 515
PpsI GAGTC 2 cut(s) 250, 1053
Ppu21I YACGTR 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 750, 943
PspGI CCWGG 2 cut(s) 750, 943
PspN4I GGNNCC 7 cut(s) 231, 237, 264, 513, 772, 936, 956
PspPI GGNCC 4 cut(s) 262, 441, 686, 954
PstI CTGCAG 1 cut(s) 882
PsyI GACNNNGTC 1 cut(s) 958
RsaI GTAC 2 cut(s) 560, 980
RsaNI GTAC 2 cut(s) 559, 979
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 480, 630, 930
SatI GCNGC 3 cut(s) 189, 495, 594
Sau3AI GATC 3 cut(s) 805, 991, 1057
Sau96I GGNCC 4 cut(s) 262, 441, 686, 954
SchI GAGTC 2 cut(s) 251, 1054
ScrFI CCNGG 5 cut(s) 445, 527, 528, 752, 945
SduI GDGCHC 2 cut(s) 240, 353
SfaNI GCATC 2 cut(s) 575, 722
SfcI CTRYAG 1 cut(s) 878
SfoI GGCGCC 1 cut(s) 513
SinI GGWCC 2 cut(s) 262, 954
SmaI CCCGGG 1 cut(s) 528
SmlI CTYRAG 3 cut(s) 901, 929, 1003
SmoI CTYRAG 3 cut(s) 901, 929, 1003
SnaBI TACGTA 1 cut(s) 978
Sse9I AATT 6 cut(s) 428, 627, 639, 660, 758, 844
SsiI CCGC 6 cut(s) 136, 142, 188, 461, 494, 952
SspDI GGCGCC 1 cut(s) 511
SspI AATATT 1 cut(s) 828
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 5 cut(s) 443, 525, 526, 750, 943
TaaI ACNGT 2 cut(s) 182, 558
TaiI ACGT 2 cut(s) 416, 980
TaqI TCGA 2 cut(s) 245, 372
TasI AATT 6 cut(s) 428, 627, 639, 660, 758, 844
TatI WGTACW 1 cut(s) 558
TauI GCSGC 2 cut(s) 191, 497
TfiI GAWTC 6 cut(s) 257, 374, 499, 747, 840, 999
Tru1I TTAA 3 cut(s) 480, 630, 930
Tru9I TTAA 3 cut(s) 480, 630, 930
TscAI CASTG 2 cut(s) 568, 715
TseFI GTSAC 1 cut(s) 849
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 849
TspGWI ACGGA 2 cut(s) 368, 533
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 2 cut(s) 568, 715
Tth111I GACNNNGTC 1 cut(s) 958
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 2 cut(s) 262, 954
XmaI CCCGGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.