Rh7DG266800

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011205
Physical Location & Seq
Reverse (-)
28336473 .. 28339925
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG266800.1

Sequence Viewer

Length: 1098 bp
ATGTACCGCAAAAAACACTTTGAAGCAGAAGAAATGGCTCTCAGTCTCGTCTTCACCTCACACTCTTCTCTCTTCTCCAAACCCCTCACATTTCCAACCCCAAAACCCCAATCCCTCTCACTACTCTCTCTCTCCTCCCCAAACCCAAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGAAGACACCCCCACCGACGGCGACCGTCCGGCGGCGAAAATCACCGACGAGTGGGGCGAGGCGGCCGAGCCGGAGCCCGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAATGAAGACGAGTGGGGAGGAGCTGATGAGGCCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAAGAGGTGGAGGAGGTCGATTCTAAGCTTACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTGGTGGAGTTGGTTAACCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTGAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTTCCACAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTGTCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCTGGTCAGCAATCAGTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCTTGGCTTCTTACTACGTACCTTGATGGTGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA

Protein Analysis

365

Amino Acids

39.5

Weight (kDa)

4.43

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 141 - 356 1.1e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 544, 803
AccBSI CCGCTC 3 cut(s) 177, 494, 985
AccI GTMKAC 1 cut(s) 278
AciI CCGC 8 cut(s) 7, 169, 175, 221, 251, 494, 527, 985
AcoI YGGCCR 2 cut(s) 252, 363
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 545
AfaI GTAC 3 cut(s) 5, 593, 1013
AfiI CCNNNNNNNGG 6 cut(s) 206, 220, 240, 523, 977, 996
AgsI TTSAA 6 cut(s) 23, 649, 761, 777, 791, 796
AhdI GACNNNNNGTC 1 cut(s) 826
AjnI CCWGG 2 cut(s) 783, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 7 cut(s) 157, 329, 371, 415, 424, 610, 756
AluI AGCT 7 cut(s) 157, 329, 371, 415, 424, 610, 756
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 50, 1058
Ama87I CYCGRG 3 cut(s) 266, 272, 559
AoxI GGCC 5 cut(s) 252, 336, 363, 474, 718
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 1 cut(s) 791
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
Asp700I GAANNNNTTC 1 cut(s) 772
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 295, 474, 719, 987
AsuC2I CCSGG 3 cut(s) 478, 560, 561
AsuHPI GGTGA 7 cut(s) 46, 223, 316, 499, 876, 992, 1034
AsuNHI GCTAGC 1 cut(s) 752
AvaI CYCGRG 3 cut(s) 266, 272, 559
AvaII GGWCC 2 cut(s) 295, 987
BanI GGYRCC 2 cut(s) 544, 803
BanII GRGCYC 2 cut(s) 267, 273
BbsI GAAGAC 3 cut(s) 43, 198, 318
Bbv12I GWGCWC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 638
BccI CCATC 5 cut(s) 566, 713, 950, 1013, 1040
BceAI ACGGC 2 cut(s) 223, 323
BciT130I CCWGG 2 cut(s) 785, 978
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 3 cut(s) 478, 560, 561
BcoDI GTCTC 2 cut(s) 50, 1058
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 911
BfoI RGCGCY 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 4 cut(s) 222, 252, 528, 627
BlsI GCNGC 4 cut(s) 223, 253, 529, 628
Bme1390I CCNGG 5 cut(s) 478, 560, 561, 785, 978
Bme18I GGWCC 2 cut(s) 295, 987
BmeRI GACNNNNNGTC 1 cut(s) 826
BmeT110I CYCGRG 3 cut(s) 266, 272, 559
BmgT120I GGNCC 4 cut(s) 295, 474, 719, 987
BmiI GGNNCC 6 cut(s) 264, 297, 546, 805, 969, 989
BmrFI CCNGG 5 cut(s) 478, 560, 561, 785, 978
BmrI ACTGGG 2 cut(s) 589, 985
BmsI GCATC 2 cut(s) 608, 755
BmtI GCTAGC 1 cut(s) 756
BmuI ACTGGG 2 cut(s) 589, 985
BpiI GAAGAC 3 cut(s) 43, 198, 318
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 919, 1021
BpuMI CCSGG 3 cut(s) 478, 560, 561
BsaAI YACGTR 1 cut(s) 1011
BsaBI GATNNNNATC 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 1058
BsaJI CCNNGG 3 cut(s) 339, 559, 560
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 6 cut(s) 206, 220, 240, 523, 977, 996
Bse1I ACTGG 3 cut(s) 517, 584, 991
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 2 cut(s) 785, 978
BseDI CCNNGG 3 cut(s) 339, 559, 560
BseGI GGATG 1 cut(s) 1051
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 6 cut(s) 206, 220, 240, 523, 977, 996
BseMII CTCAG 6 cut(s) 55, 363, 369, 411, 597, 916
BseNI ACTGG 3 cut(s) 517, 584, 991
BseRI GAGGAG 5 cut(s) 124, 151, 169, 339, 413
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 638
Bsh1285I CGRYCG 2 cut(s) 214, 255
BshFI GGCC 5 cut(s) 254, 338, 365, 476, 720
BshNI GGYRCC 2 cut(s) 544, 803
BsiEI CGRYCG 2 cut(s) 214, 255
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 3 cut(s) 266, 272, 559
BsiSI CCGG 8 cut(s) 218, 260, 302, 362, 477, 542, 560, 717
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 6 cut(s) 206, 220, 240, 523, 977, 996
BsmAI GTCTC 2 cut(s) 50, 1058
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 5 cut(s) 254, 338, 365, 476, 720
Bso31I GGTCTC 1 cut(s) 1058
BsoBI CYCGRG 3 cut(s) 266, 272, 559
Bsp1286I GDGCHC 3 cut(s) 267, 273, 386
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 3 cut(s) 838, 1024, 1090
BspACI CCGC 8 cut(s) 7, 169, 175, 221, 251, 494, 527, 985
BspANI GGCC 5 cut(s) 254, 338, 365, 476, 720
BspCNI CTCAG 6 cut(s) 54, 364, 370, 412, 598, 915
BspLI GGNNCC 6 cut(s) 264, 297, 546, 805, 969, 989
BspMAI CTGCAG 1 cut(s) 915
BspMI ACCTGC 1 cut(s) 620
BspOI GCTAGC 1 cut(s) 756
BspT107I GGYRCC 2 cut(s) 544, 803
BspTNI GGTCTC 1 cut(s) 1058
BsrBI CCGCTC 3 cut(s) 177, 494, 985
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 3 cut(s) 517, 584, 991
BssECI CCNNGG 3 cut(s) 339, 559, 560
BssMI GATC 3 cut(s) 838, 1024, 1090
BssNI GRCGYC 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 785, 978
Bst4CI ACNGT 2 cut(s) 215, 591
Bst6I CTCTTC 4 cut(s) 70, 77, 384, 422
BstACI GRCGYC 1 cut(s) 545
BstAUI TGTACA 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 1011
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 7 cut(s) 41, 372, 378, 411, 420, 606, 902
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 3 cut(s) 841, 1027, 1093
BstMAI GTCTC 2 cut(s) 50, 1058
BstMBI GATC 3 cut(s) 838, 1024, 1090
BstMCI CGRYCG 2 cut(s) 214, 255
BstMWI GCNNNNNNNGC 2 cut(s) 335, 421
BstNI CCWGG 2 cut(s) 785, 978
BstSCI CCNGG 5 cut(s) 476, 558, 559, 783, 976
BstSFI CTRYAG 1 cut(s) 911
BstSNI TACGTA 1 cut(s) 1011
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 3 cut(s) 43, 198, 318
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 5 cut(s) 254, 338, 365, 476, 720
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 1051
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 594, 748
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 754
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 295, 474, 719, 987
Cfr9I CCCGGG 1 cut(s) 559
Csp6I GTAC 3 cut(s) 4, 592, 1012
CviQI GTAC 3 cut(s) 4, 592, 1012
DdeI CTNAG 7 cut(s) 41, 372, 378, 411, 420, 606, 902
DinI GGCGCC 1 cut(s) 546
DpnI GATC 3 cut(s) 840, 1026, 1092
DpnII GATC 3 cut(s) 838, 1024, 1090
DriI GACNNNNNGTC 1 cut(s) 826
EaeI YGGCCR 2 cut(s) 252, 363
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 4 cut(s) 70, 77, 384, 422
Eam1105I GACNNNNNGTC 1 cut(s) 826
EarI CTCTTC 4 cut(s) 70, 77, 384, 422
EciI GGCGGA 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 252
Eco105I TACGTA 1 cut(s) 1011
Eco24I GRGCYC 2 cut(s) 267, 273
Eco31I GGTCTC 1 cut(s) 1058
Eco47I GGWCC 2 cut(s) 295, 987
Eco52I CGGCCG 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 446
Eco88I CYCGRG 3 cut(s) 266, 272, 559
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 2 cut(s) 783, 976
EcoT38I GRGCYC 2 cut(s) 267, 273
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
FaiI YATR 2 cut(s) 453, 824
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 469
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 4 cut(s) 222, 252, 528, 627
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 2 cut(s) 267, 273
Fsp4HI GCNGC 4 cut(s) 222, 252, 528, 627
FspBI CTAG 1 cut(s) 753
GlaI GCGC 1 cut(s) 546
GluI GCNGC 4 cut(s) 222, 252, 528, 627
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 5 cut(s) 254, 338, 365, 476, 720
HapII CCGG 8 cut(s) 218, 260, 302, 362, 477, 542, 560, 717
HhaI GCGC 1 cut(s) 547
Hin1I GRCGYC 1 cut(s) 545
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 2 cut(s) 279, 514
HindII GTYRAC 2 cut(s) 279, 514
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 8 cut(s) 275, 290, 407, 532, 780, 873, 1032, 1078
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 8 cut(s) 218, 260, 302, 362, 477, 542, 560, 717
HphI GGTGA 7 cut(s) 46, 223, 316, 499, 876, 992, 1034
Hpy166II GTNNAC 3 cut(s) 279, 514, 594
Hpy188I TCNGA 9 cut(s) 190, 289, 295, 484, 607, 690, 699, 767, 1031
Hpy188III TCNNGA 3 cut(s) 349, 777, 936
Hpy8I GTNNAC 3 cut(s) 279, 514, 594
Hpy99I CGWCG 3 cut(s) 209, 239, 553
HpyAV CCTTC 4 cut(s) 175, 783, 794, 1067
HpyCH4III ACNGT 2 cut(s) 215, 591
HpyCH4IV ACGT 2 cut(s) 446, 1010
HpyCH4V TGCA 4 cut(s) 599, 746, 913, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 421
HpyF3I CTNAG 7 cut(s) 41, 372, 378, 411, 420, 606, 902
HpySE526I ACGT 2 cut(s) 446, 1010
Hsp92I GRCGYC 1 cut(s) 545
HspAI GCGC 1 cut(s) 545
KasI GGCGCC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 1090
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 838, 1024, 1090
LmnI GCTCC 3 cut(s) 182, 262, 326
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 2 cut(s) 608, 755
MaeI CTAG 1 cut(s) 753
MaeII ACGT 2 cut(s) 446, 1010
MaeIII GTNAC 1 cut(s) 882
MalI GATC 3 cut(s) 840, 1026, 1092
MbiI CCGCTC 3 cut(s) 177, 494, 985
MboI GATC 3 cut(s) 838, 1024, 1090
MfeI CAATTG 1 cut(s) 672
MhlI GDGCHC 3 cut(s) 267, 273, 386
MluCI AATT 6 cut(s) 461, 660, 672, 693, 791, 877
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 2 cut(s) 284, 1087
MmeI TCCRAC 3 cut(s) 119, 462, 501
MroXI GAANNNNTTC 1 cut(s) 772
MseI TTAA 3 cut(s) 513, 663, 963
MspI CCGG 8 cut(s) 218, 260, 302, 362, 477, 542, 560, 717
MspR9I CCNGG 5 cut(s) 478, 560, 561, 785, 978
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 2 cut(s) 785, 978
MwoI GCNNNNNNNGC 2 cut(s) 335, 421
NarI GGCGCC 1 cut(s) 545
NciI CCSGG 3 cut(s) 478, 560, 561
NdeII GATC 3 cut(s) 838, 1024, 1090
NheI GCTAGC 1 cut(s) 752
NlaIV GGNNCC 6 cut(s) 264, 297, 546, 805, 969, 989
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 772
PfeI GAWTC 6 cut(s) 290, 407, 532, 780, 873, 1032
PflFI GACNNNGTC 1 cut(s) 991
PkrI GCNGC 4 cut(s) 223, 253, 529, 628
PleI GAGTC 2 cut(s) 283, 1086
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 2 cut(s) 283, 1086
Ppu21I YACGTR 1 cut(s) 1011
Psp6I CCWGG 2 cut(s) 783, 976
PspGI CCWGG 2 cut(s) 783, 976
PspN4I GGNNCC 6 cut(s) 264, 297, 546, 805, 969, 989
PspPI GGNCC 4 cut(s) 295, 474, 719, 987
PstI CTGCAG 1 cut(s) 915
PsyI GACNNNGTC 1 cut(s) 991
RsaI GTAC 3 cut(s) 5, 593, 1013
RsaNI GTAC 3 cut(s) 4, 592, 1012
SalI GTCGAC 1 cut(s) 277
SaqAI TTAA 3 cut(s) 513, 663, 963
SatI GCNGC 4 cut(s) 222, 252, 528, 627
Sau3AI GATC 3 cut(s) 838, 1024, 1090
Sau96I GGNCC 4 cut(s) 295, 474, 719, 987
SchI GAGTC 2 cut(s) 284, 1087
ScrFI CCNGG 5 cut(s) 478, 560, 561, 785, 978
SduI GDGCHC 3 cut(s) 267, 273, 386
SfaNI GCATC 2 cut(s) 608, 755
SfcI CTRYAG 1 cut(s) 911
SfoI GGCGCC 1 cut(s) 546
SinI GGWCC 2 cut(s) 295, 987
SmaI CCCGGG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 934, 1036
SmoI CTYRAG 2 cut(s) 934, 1036
SnaBI TACGTA 1 cut(s) 1011
Sse9I AATT 6 cut(s) 461, 660, 672, 693, 791, 877
SsiI CCGC 8 cut(s) 7, 169, 175, 221, 251, 494, 527, 985
SspDI GGCGCC 1 cut(s) 544
SspI AATATT 1 cut(s) 861
SspMI CTAG 1 cut(s) 753
StyD4I CCNGG 5 cut(s) 476, 558, 559, 783, 976
TaaI ACNGT 2 cut(s) 215, 591
TaiI ACGT 2 cut(s) 449, 1013
TaqI TCGA 3 cut(s) 278, 405, 654
TasI AATT 6 cut(s) 461, 660, 672, 693, 791, 877
TatI WGTACW 1 cut(s) 591
TauI GCSGC 3 cut(s) 224, 254, 530
TfiI GAWTC 6 cut(s) 290, 407, 532, 780, 873, 1032
Tru1I TTAA 3 cut(s) 513, 663, 963
Tru9I TTAA 3 cut(s) 513, 663, 963
TscAI CASTG 2 cut(s) 601, 748
TseFI GTSAC 1 cut(s) 882
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 882
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 401, 566
TspMI CCCGGG 1 cut(s) 559
TspRI CASTG 2 cut(s) 601, 748
Tth111I GACNNNGTC 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 295, 987
XapI RAATTY 1 cut(s) 791
XmaI CCCGGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 772
XspI CTAG 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.