Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Forward (+)

3452000 .. 3455684

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTCTCATCTTCACCTCACACTCTTCTCTCTTCTCCAAAAGCTTCACCCACCAACTCTCATTTCCAACCCCAAAATCCCAATCTCTATCTCTCCTCTCTTTCCCCTCACCAAACCCTAACCCTAAGCTCCCCTCACTCCATCTACGCTCCTCTCTCTCCGACGATACCCCCACAGACGGCGACCGTCCGACAAAGATCACTGACGAGTGGGGCGAGGAGGCCGCCCCGGAGGCCGAACCCGCATCCAAAGTCTCCGAATCGGACCCTCCGCAGAACGAGGATGAGTGGGGAGGTGGAGGAGATGATGTCGTTGAAATTGGGAATGGGAGTCCGGCCAAAGCTGAGGCTGAGATTGAGGAGAAGGTGGATGGTAAGTTTAGTGAGCTCAAGAGGGCTTTGGCAGACACTGTTTATGGGACTGAATTCGGGTTTCGGGCCGGGTCTGAGGTCAGGGCGGAGGTCTTAGAGTTGGTTAACCAGTTGGAGGCGGTCAATCCAAACCCGGCTCCGACGGCGAATCCGGGTCTTCTTGATGGCAACTGGGTTTTGCTGTACACTGCATCCTCTGAGCTGTTGCCACTTCTGGCTGCAGGTAGTACACCTTTGTTGAAAGTGAGTAAAATAGGCCAATCGATTGACACCAGCAGCTTAACCATAGTGAACTCAACCACGTTGTCTGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCCGCTAGCTTTGAAGTTAGAAGCCCTTCAAGAATTCAGGTTGAATTCAAGGAAGGCAGCGTTTTGCCTCCAAAGATAAAGTCAAGTGTTGATCTCCCGCAAGAAGTGGATATCTTTGGGCAGAAAATCAATTTATCACCTGTCCAGCGAACTCTCAATCCTTTGCAGGAAGCTGTTGCAAGTATCTCAAGAGCCATTTCTGGTCAGCCACCATTTAAGGTTTCCATTCCAGGAGAGCGGACGAAATCTTGGCTTCTTATTACATATCTTGATGAGGATCTCCGGATCTCGAGGGGGGATGGTGGTCTTTTTGTGCTTGCTAGAGAAGGCAGCCCCCTCATAGTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

354

Amino Acids

37.8

Weight (kDa)

4.71

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccBSI	CCGCTC	1 cut(s)	949
AccIII	TCCGGA	1 cut(s)	993
AciI	CCGC	8 cut(s)	225, 243, 272, 458, 491, 714, 809, 949
AclWI	GGATC	2 cut(s)	996, 1004
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	3 cut(s)	425, 744, 755
AfaI	GTAC	2 cut(s)	557, 601
AfiI	CCNNNNNNNGG	2 cut(s)	179, 487
AgsI	TTSAA	6 cut(s)	317, 613, 725, 741, 755, 760
AjnI	CCWGG	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AloI	GAACNNNNNNTCC	2 cut(s)	853, 885
AluBI	AGCT	8 cut(s)	45, 130, 344, 388, 574, 651, 720, 884
AluI	AGCT	8 cut(s)	45, 130, 344, 388, 574, 651, 720, 884
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	2 cut(s)	996, 1004
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	1000
Aor13HI	TCCGGA	1 cut(s)	993
AoxI	GGCC	6 cut(s)	222, 234, 336, 438, 628, 682
ApeKI	GCWGC	4 cut(s)	590, 648, 768, 1041
ApoI	RAATTY	3 cut(s)	425, 744, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
Asp700I	GAANNNNTTC	1 cut(s)	736
AspS9I	GGNCC	3 cut(s)	265, 438, 683
AsuC2I	CCSGG	4 cut(s)	230, 442, 506, 525
AsuHPI	GGTGA	4 cut(s)	7, 40, 102, 840
AsuNHI	GCTAGC	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	1000
AvaII	GGWCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	577, 660, 780, 1053
BccI	CCATC	4 cut(s)	150, 365, 530, 1004
BceAI	ACGGC	2 cut(s)	196, 531
BciT130I	CCWGG	1 cut(s)	942
BcnI	CCSGG	4 cut(s)	230, 442, 506, 525
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	717, 1032
BfmI	CTRYAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	5 cut(s)	225, 591, 649, 769, 1042
BlsI	GCNGC	5 cut(s)	226, 592, 650, 770, 1043
Bme1390I	CCNGG	5 cut(s)	230, 442, 506, 525, 942
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	1000
BmgT120I	GGNCC	3 cut(s)	265, 438, 683
BmiI	GGNNCC	2 cut(s)	267, 510
BmrFI	CCNGG	5 cut(s)	230, 442, 506, 525, 942
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	3 cut(s)	254, 572, 719
BmtI	GCTAGC	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	521
Bpu10I	CCTNAGC	2 cut(s)	126, 345
BpuEI	CTTGAG	2 cut(s)	374, 883
BpuMI	CCSGG	4 cut(s)	230, 442, 506, 525
Bsa29I	ATCGAT	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 487
Bse1I	ACTGG	2 cut(s)	481, 548
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	993
BseBI	CCWGG	1 cut(s)	942
BseCI	ATCGAT	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	6 cut(s)	245, 289, 376, 563, 710, 1015
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	2 cut(s)	179, 487
BseMII	CTCAG	4 cut(s)	336, 342, 438, 561
BseNI	ACTGG	2 cut(s)	481, 548
BseRI	GAGGAG	5 cut(s)	86, 142, 233, 315, 374
BseXI	GCAGC	4 cut(s)	577, 660, 780, 1053
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	224, 236, 338, 440, 630, 684
BshVI	ATCGAT	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	1000
BsiSI	CCGG	6 cut(s)	230, 335, 441, 506, 524, 994
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	179, 487
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	6 cut(s)	224, 236, 338, 440, 630, 684
BsoBI	CYCGRG	1 cut(s)	1000
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	993
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	198, 802, 988, 996
BspACI	CCGC	8 cut(s)	225, 243, 272, 458, 491, 714, 809, 949
BspANI	GGCC	6 cut(s)	224, 236, 338, 440, 630, 684
BspCNI	CTCAG	4 cut(s)	337, 343, 439, 562
BspDI	ATCGAT	1 cut(s)	635
BspEI	TCCGGA	1 cut(s)	993
BspLI	GGNNCC	2 cut(s)	267, 510
BspMAI	CTGCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	996, 1004
BsrBI	CCGCTC	1 cut(s)	949
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	481, 548
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	198, 802, 988, 996
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	2 cut(s)	188, 412
Bst6I	CTCTTC	2 cut(s)	31, 38
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	718, 1029
BstDEI	CTNAG	6 cut(s)	126, 345, 351, 447, 466, 570
BstF5I	GGATG	6 cut(s)	245, 289, 376, 563, 710, 1015
BstKTI	GATC	4 cut(s)	201, 805, 991, 999
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	4 cut(s)	198, 802, 988, 996
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 515
BstNI	CCWGG	1 cut(s)	942
BstSCI	CCNGG	5 cut(s)	228, 440, 504, 523, 940
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	4 cut(s)	577, 660, 780, 1053
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	2 cut(s)	988, 996
BstYI	RGATCY	2 cut(s)	988, 996
Bsu15I	ATCGAT	1 cut(s)	635
BsuRI	GGCC	6 cut(s)	224, 236, 338, 440, 630, 684
BsuTUI	ATCGAT	1 cut(s)	635
BtsCI	GGATG	6 cut(s)	245, 289, 376, 563, 710, 1015
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	201, 408, 558, 712
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	718, 1029
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	3 cut(s)	265, 438, 683
ClaI	ATCGAT	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	556, 600
CviQI	GTAC	2 cut(s)	556, 600
DdeI	CTNAG	6 cut(s)	126, 345, 351, 447, 466, 570
DpnI	GATC	4 cut(s)	200, 804, 990, 998
DpnII	GATC	4 cut(s)	198, 802, 988, 996
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	31, 38
EarI	CTCTTC	2 cut(s)	31, 38
EciI	GGCGGA	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	388
EcoRI	GAATTC	3 cut(s)	425, 744, 755
EcoRII	CCWGG	1 cut(s)	940
EcoRV	GATATC	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	4 cut(s)	417, 659, 976, 1052
FaqI	GGGAC	1 cut(s)	433
FauI	CCCGC	2 cut(s)	250, 816
Fnu4HI	GCNGC	5 cut(s)	225, 591, 649, 769, 1042
FokI	GGATG	6 cut(s)	232, 296, 383, 550, 697, 1022
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	225, 591, 649, 769, 1042
FspBI	CTAG	2 cut(s)	717, 1032
GluI	GCNGC	5 cut(s)	225, 591, 649, 769, 1042
HaeIII	GGCC	6 cut(s)	224, 236, 338, 440, 630, 684
HapII	CCGG	6 cut(s)	230, 335, 441, 506, 524, 994
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	3 cut(s)	260, 331, 520
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	6 cut(s)	230, 335, 441, 506, 524, 994
HphI	GGTGA	4 cut(s)	7, 40, 102, 840
Hpy166II	GTNNAC	4 cut(s)	478, 558, 602, 664
Hpy188I	TCNGA	7 cut(s)	163, 192, 259, 265, 448, 513, 571
Hpy188III	TCNNGA	7 cut(s)	391, 533, 741, 900, 980, 994, 1000
Hpy8I	GTNNAC	4 cut(s)	478, 558, 602, 664
Hpy99I	CGWCG	2 cut(s)	167, 517
HpyAV	CCTTC	4 cut(s)	358, 747, 758, 1031
HpyCH4III	ACNGT	2 cut(s)	188, 412
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	5 cut(s)	563, 593, 710, 877, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 515
HpyF3I	CTNAG	6 cut(s)	126, 345, 351, 447, 466, 570
HpySE526I	ACGT	1 cut(s)	674
Kpn2I	TCCGGA	1 cut(s)	993
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	198, 802, 988, 996
LmnI	GCTCC	3 cut(s)	135, 155, 514
Lsp1109I	GCAGC	4 cut(s)	577, 660, 780, 1053
LweI	GCATC	3 cut(s)	254, 572, 719
MaeI	CTAG	2 cut(s)	717, 1032
MaeII	ACGT	1 cut(s)	674
MalI	GATC	4 cut(s)	200, 804, 990, 998
MbiI	CCGCTC	1 cut(s)	949
MboI	GATC	4 cut(s)	198, 802, 988, 996
MboII	GAAGA	4 cut(s)	4, 18, 25, 521
MflI	RGATCY	2 cut(s)	988, 996
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	5 cut(s)	318, 425, 744, 755, 841
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	5 cut(s)	92, 186, 215, 465, 536
MroI	TCCGGA	1 cut(s)	993
MroXI	GAANNNNTTC	1 cut(s)	736
MseI	TTAA	3 cut(s)	477, 653, 927
MspI	CCGG	6 cut(s)	230, 335, 441, 506, 524, 994
MspR9I	CCNGG	5 cut(s)	230, 442, 506, 525, 942
MvaI	CCWGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 515
NciI	CCSGG	4 cut(s)	230, 442, 506, 525
NdeII	GATC	4 cut(s)	198, 802, 988, 996
NheI	GCTAGC	1 cut(s)	716
NlaIV	GGNNCC	2 cut(s)	267, 510
PaeR7I	CTCGAG	1 cut(s)	1000
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	260, 520
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	5 cut(s)	226, 592, 650, 770, 1043
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	2 cut(s)	267, 510
PspPI	GGNCC	3 cut(s)	265, 438, 683
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	988, 996
RsaI	GTAC	2 cut(s)	557, 601
RsaNI	GTAC	2 cut(s)	556, 600
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	477, 653, 927
SatI	GCNGC	5 cut(s)	225, 591, 649, 769, 1042
Sau3AI	GATC	4 cut(s)	198, 802, 988, 996
Sau96I	GGNCC	3 cut(s)	265, 438, 683
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	5 cut(s)	230, 442, 506, 525, 942
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	3 cut(s)	254, 572, 719
SfcI	CTRYAG	1 cut(s)	591
Sfr274I	CTCGAG	1 cut(s)	1000
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	1000
SmlI	CTYRAG	3 cut(s)	389, 898, 1000
SmoI	CTYRAG	3 cut(s)	389, 898, 1000
Sse9I	AATT	5 cut(s)	318, 425, 744, 755, 841
SsiI	CCGC	8 cut(s)	225, 243, 272, 458, 491, 714, 809, 949
SspMI	CTAG	2 cut(s)	717, 1032
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	5 cut(s)	228, 440, 504, 523, 940
TaaI	ACNGT	2 cut(s)	188, 412
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	2 cut(s)	635, 1001
TasI	AATT	5 cut(s)	318, 425, 744, 755, 841
TatI	WGTACW	2 cut(s)	555, 599
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	260, 520
Tru1I	TTAA	3 cut(s)	477, 653, 927
Tru9I	TTAA	3 cut(s)	477, 653, 927
TscAI	CASTG	4 cut(s)	208, 415, 565, 712
TseI	GCWGC	4 cut(s)	590, 648, 768, 1041
TspRI	CASTG	4 cut(s)	208, 415, 565, 712
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	425, 744, 755
XhoI	CTCGAG	1 cut(s)	1000
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	2 cut(s)	717, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.