AT2G36300

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007103
Physical Location & Seq
Reverse (-)
15212970 .. 15214340
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36300.1

Sequence Viewer

Length: 768 bp
ATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCTCCGGTGGATCTTCAGGCGGTGCTAATGTCCAGCAACGAAGATTCCCAGCGACACCGTTTCAACCGCCGCGTCCCTCTTCTTCCGCAATCCCTTTCATGTCATTCGACATTGGATCCGCAGCCGCGTCTTCCGCTACACCTGCCGGACCATTCGGCGGGACAATCGCTTCCTCTTCTTCTTTTGGTGGAGGTTCAGCTTCGTTTGAAGATGAGGAGCCATTACTCGACGAGCTCGGTATCCATCCAGATCAAATCTGGAAGAAGACTAGATCGATTCTCAATCCTTTTCGGATTAACCAAGCTGTTCACAAAGATTCAGATCTATCTGGTCCGATCTTTCTGTACCTTGCGCTTTGCTTATTTCAGTTGTTAGCTGGTAAGATCCAGTTCGGTGTCATACTTGGATGGATCGTCGTCTCCTCTATCTTTCTATACGTCGTCTTTAACATGCTTGCTGGTAGAAATGGGAACCTTAATCTCCATACGTGTACGAGCTTGGTCGGATACTGTTTGCTTCCGGTGGTGGTTTTATCGGCGGTGTCATTGTTCGTTCCCCAGGGAGCAGGGCCGGTTCGGTTTGTGCTTGCGGCTTTGTTTGTGTTGTGGTCCACTAGAGCCTGCTCTACATTGGTGGTATCTCTTGCTGATGGTGGAGAAGAGCACCGTGGCTTGATCGCGTACGCTTGTTTCTTGATCTATACTCTCTTCTCTCTTCTTGTTATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

255

Amino Acids

27.09

Weight (kDa)

6.88

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 104 - 253 2.1e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccII CGCG 3 cut(s) 109, 164, 716
AclWI GGATC 5 cut(s) 55, 147, 160, 415, 455
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 3 cut(s) 383, 529, 719
AfiI CCNNNNNNNGG 2 cut(s) 44, 194
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 2 cut(s) 101, 245
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 5 cut(s) 236, 271, 341, 413, 534
AluI AGCT 5 cut(s) 236, 271, 341, 413, 534
Alw21I GWGCWC 2 cut(s) 273, 702
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 5 cut(s) 55, 147, 160, 415, 455
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 4 cut(s) 185, 368, 605, 645
AvaII GGWCC 3 cut(s) 185, 368, 645
BamHI GGATCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 159, 308
Bbv12I GWGCWC 2 cut(s) 273, 702
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 288, 438, 680
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 2 cut(s) 287, 536
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 2 cut(s) 306, 651
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 187
BfuI GTATCC 2 cut(s) 287, 536
BglII AGATCT 1 cut(s) 358
BisI GCNGC 4 cut(s) 107, 159, 162, 627
BlsI GCNGC 4 cut(s) 108, 160, 163, 628
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 3 cut(s) 185, 368, 645
BmgT120I GGNCC 4 cut(s) 185, 368, 605, 645
BmiI GGNNCC 3 cut(s) 154, 255, 509
BmrFI CCNGG 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 159, 308
Bsa29I ATCGAT 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 594, 595, 703
BsaWI WCCGGW 2 cut(s) 41, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 194
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 596
BseCI ATCGAT 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 594, 595, 703
BseGI GGATG 2 cut(s) 280, 449
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 44, 194
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 266, 448
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 3 cut(s) 109, 164, 716
BshFI GGCC 1 cut(s) 607
BshVI ATCGAT 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 273, 702
BsiSI CCGG 4 cut(s) 42, 183, 557, 608
BsiWI CGTACG 1 cut(s) 717
BslFI GGGAC 2 cut(s) 96, 211
BslI CCNNNNNNNGG 2 cut(s) 44, 194
BsmAI GTCTC 1 cut(s) 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 96, 211
BsnI GGCC 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 273, 702
BspANI GGCC 1 cut(s) 607
BspDI ATCGAT 1 cut(s) 311
BspFNI CGCG 3 cut(s) 109, 164, 716
BspLI GGNNCC 3 cut(s) 154, 255, 509
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 5 cut(s) 55, 147, 160, 415, 455
BspQI GCTCTTC 1 cut(s) 690
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 594, 595, 703
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 96, 548, 704
Bst6I CTCTTC 5 cut(s) 121, 217, 690, 749, 756
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 492, 624, 658
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 2 cut(s) 280, 449
BstFNI CGCG 3 cut(s) 109, 164, 716
BstHHI GCGC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 3 cut(s) 109, 164, 716
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 2 cut(s) 159, 308
BstX2I RGATCY 4 cut(s) 47, 152, 358, 420
BstYI RGATCY 4 cut(s) 47, 152, 358, 420
Bsu15I ATCGAT 1 cut(s) 311
BsuI GTATCC 2 cut(s) 287, 536
BsuRI GGCC 1 cut(s) 607
BsuTUI ATCGAT 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 2 cut(s) 280, 449
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 492, 624, 658
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 4 cut(s) 185, 368, 605, 645
ClaI ATCGAT 1 cut(s) 311
CseI GACGC 2 cut(s) 98, 153
Csp6I GTAC 3 cut(s) 382, 528, 718
CviAII CATG 2 cut(s) 136, 487
CviQI GTAC 3 cut(s) 382, 528, 718
Eam1104I CTCTTC 5 cut(s) 121, 217, 690, 749, 756
EarI CTCTTC 5 cut(s) 121, 217, 690, 749, 756
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 185, 368, 645
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 2 cut(s) 139, 490
FaiI YATR 7 cut(s) 137, 437, 472, 488, 522, 738, 761
FaqI GGGAC 2 cut(s) 96, 211
FatI CATG 2 cut(s) 135, 486
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 107, 159, 162, 627
FokI GGATG 2 cut(s) 267, 456
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 4 cut(s) 107, 159, 162, 627
FspBI CTAG 2 cut(s) 306, 651
GlaI GCGC 1 cut(s) 390
GluI GCNGC 4 cut(s) 107, 159, 162, 627
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 607
HapII CCGG 4 cut(s) 42, 183, 557, 608
HgaI GACGC 2 cut(s) 98, 153
HhaI GCGC 1 cut(s) 391
Hin1II CATG 2 cut(s) 139, 490
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 3 cut(s) 81, 313, 353
HpaII CCGG 4 cut(s) 42, 183, 557, 608
Hpy166II GTNNAC 3 cut(s) 346, 528, 648
Hpy188I TCNGA 4 cut(s) 330, 358, 372, 542
Hpy188III TCNNGA 3 cut(s) 284, 295, 730
Hpy8I GTNNAC 3 cut(s) 346, 528, 648
Hpy99I CGWCG 3 cut(s) 269, 455, 479
HpyCH4III ACNGT 3 cut(s) 96, 548, 704
HpyCH4IV ACGT 2 cut(s) 474, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpySE526I ACGT 2 cut(s) 474, 524
Hsp92II CATG 2 cut(s) 139, 490
HspAI GCGC 1 cut(s) 389
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 2 cut(s) 253, 599
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 306, 651
MaeII ACGT 2 cut(s) 474, 524
MflI RGATCY 4 cut(s) 47, 152, 358, 420
MhlI GDGCHC 2 cut(s) 273, 702
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 6 cut(s) 49, 124, 220, 221, 244, 469
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 333, 483, 513
MspI CCGG 4 cut(s) 42, 183, 557, 608
MspR9I CCNGG 1 cut(s) 596
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 3 cut(s) 109, 164, 716
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NlaIII CATG 2 cut(s) 139, 490
NlaIV GGNNCC 3 cut(s) 154, 255, 509
NspI RCATGY 1 cut(s) 490
PaqCI CACCTGC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 81, 313, 353
Pfl23II CGTACG 1 cut(s) 717
PkrI GCNGC 4 cut(s) 108, 160, 163, 628
Ppu21I YACGTR 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 594
PspLI CGTACG 1 cut(s) 717
PspN4I GGNNCC 3 cut(s) 154, 255, 509
PspPI GGNCC 4 cut(s) 185, 368, 605, 645
PsuI RGATCY 4 cut(s) 47, 152, 358, 420
RsaI GTAC 3 cut(s) 383, 529, 719
RsaNI GTAC 3 cut(s) 382, 528, 718
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 3 cut(s) 333, 483, 513
SatI GCNGC 4 cut(s) 107, 159, 162, 627
Sau96I GGNCC 4 cut(s) 185, 368, 605, 645
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 2 cut(s) 273, 702
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 3 cut(s) 185, 368, 645
SspMI CTAG 2 cut(s) 306, 651
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 96, 548, 704
TaiI ACGT 2 cut(s) 477, 527
TaqI TCGA 3 cut(s) 144, 264, 311
TauI GCSGC 3 cut(s) 109, 164, 629
TfiI GAWTC 3 cut(s) 81, 313, 353
Tru1I TTAA 3 cut(s) 333, 483, 513
Tru9I TTAA 3 cut(s) 333, 483, 513
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 124
VpaK11BI GGWCC 3 cut(s) 185, 368, 645
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 2 cut(s) 306, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.