MD12G1023700.v1.1

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0007103
Physical Location & Seq
Forward (+)
2396089 .. 2396856
768 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1023700.v1.1.491

Sequence Viewer

Length: 768 bp
ATGACCAAGGATTTCGCCGTCCCCCCTGTGGTATTCCCCTCTGGCGGCAACCCTAGCGCCGTCGCAGCCAACAACATCCAGCAACGACGCGTCGCAACGGCGCCGTTTCAGCCCCCGCGCACCTCAACCTCCTCCATCCCTTTCATGTCCTTCGACATCGGTTCCGCCGCCGCCTCGTCGTCGTCCTCCTCCCTCTTCGGAGGCCCGATCGGATCCTCCTCCGTCCCCGGCGGCTCCGCCTCTTTCGAGGACGAGGAGCCCCTCCTTGACGAGCTTGGTATCCACCCTGACCAAATTTGGAGAAAAACCAAGTCCATCCTCAACCCGTTCCGGTCCAACCCGGCGGTCCACAAGGACTCGGACCTCTCCGGGCCTATCCTCCTCTACATGTCACTCTGCCTCTTCCAACTCCTCGCCGGAAAAATTCAGTTCGGTGTCATACTCGGGTGGATCGTCGTTTCATCAATCTTCCTCTACATCGTCTTCAACATGCTCGCCGGGCGTAACGGCAATCTCGACCTGCACAGATGTACGTCCGTGGTGGGGTATTGTATGTTGCCCGTGGTGATCTTATCGGCTGCCTCGCTCTTCGTCCCCCAAGGCGGCACCTTCAGGATCGCCGTGGCTGCCGTCTTCGTATTGTGGGCTACTAGGGTTTGCACAGGGCTCATGGTTGCGCTTGCTGACGGAGGCGATGAGCATCGCGGCTTAATAGCGTATGCTTGTTTCTTGATTTACACTCTGTTTTCGCTTCTTGTGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

256

Amino Acids

27.17

Weight (kDa)

6.88

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 107 - 253 1.1e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 100, 605
AccII CGCG 3 cut(s) 90, 118, 705
AclWI GGATC 4 cut(s) 207, 220, 458, 623
AcsI RAATTY 2 cut(s) 294, 423
AcuI CTGAAG 1 cut(s) 595
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 4 cut(s) 28, 44, 543, 602
AflIII ACRYGT 2 cut(s) 88, 387
AgsI TTSAA 1 cut(s) 487
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AlwI GGATC 4 cut(s) 207, 220, 458, 623
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 2 cut(s) 202, 371
ApeKI GCWGC 3 cut(s) 65, 578, 626
ApoI RAATTY 2 cut(s) 294, 423
AspLEI GCGC 4 cut(s) 59, 103, 120, 679
AspS9I GGNCC 5 cut(s) 203, 333, 346, 361, 371
AsuC2I CCSGG 4 cut(s) 228, 341, 370, 499
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 3 cut(s) 333, 346, 361
BamHI GGATCC 1 cut(s) 212
BanI GGYRCC 2 cut(s) 100, 605
BanII GRGCYC 2 cut(s) 261, 669
BbsI GAAGAC 2 cut(s) 475, 625
BbvI GCAGC 3 cut(s) 77, 565, 613
BccI CCATC 2 cut(s) 143, 323
BceAI ACGGC 7 cut(s) 2, 44, 88, 114, 523, 605, 614
BciVI GTATCC 1 cut(s) 290
BcnI CCSGG 4 cut(s) 228, 341, 370, 499
BfaI CTAG 2 cut(s) 54, 651
BfoI RGCGCY 2 cut(s) 60, 104
BfuAI ACCTGC 1 cut(s) 528
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 9 cut(s) 46, 66, 168, 171, 232, 579, 604, 627, 706
BlsI GCNGC 9 cut(s) 47, 67, 169, 172, 233, 580, 605, 628, 707
Bme1390I CCNGG 4 cut(s) 228, 341, 370, 499
Bme18I GGWCC 3 cut(s) 333, 346, 361
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 5 cut(s) 203, 333, 346, 361, 371
BmiI GGNNCC 6 cut(s) 102, 163, 214, 235, 258, 607
BmrFI CCNGG 4 cut(s) 228, 341, 370, 499
BmsI GCATC 1 cut(s) 709
BpiI GAAGAC 2 cut(s) 475, 625
BpuMI CCSGG 4 cut(s) 228, 341, 370, 499
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 6 cut(s) 6, 226, 537, 561, 598, 621
BsaWI WCCGGW 1 cut(s) 330
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 44, 543, 602
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 6 cut(s) 6, 226, 537, 561, 598, 621
BseGI GGATG 3 cut(s) 75, 135, 315
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 4 cut(s) 28, 44, 543, 602
BseRI GAGGAG 6 cut(s) 121, 178, 208, 269, 371, 401
BseXI GCAGC 3 cut(s) 77, 565, 613
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 3 cut(s) 90, 118, 705
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 204, 373
BshNI GGYRCC 2 cut(s) 100, 605
BsiEI CGRYCG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 6 cut(s) 228, 331, 341, 369, 417, 498
BslFI GGGAC 3 cut(s) 5, 209, 578
BslI CCNNNNNNNGG 4 cut(s) 28, 44, 543, 602
BsmFI GGGAC 3 cut(s) 5, 209, 578
BsnI GGCC 2 cut(s) 204, 373
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 261, 669
Bsp143I GATC 5 cut(s) 207, 212, 450, 567, 615
BspANI GGCC 2 cut(s) 204, 373
BspFNI CGCG 3 cut(s) 90, 118, 705
BspLI GGNNCC 6 cut(s) 102, 163, 214, 235, 258, 607
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 4 cut(s) 207, 220, 458, 623
BspQI GCTCTTC 1 cut(s) 593
BspT107I GGYRCC 2 cut(s) 100, 605
BssECI CCNNGG 6 cut(s) 6, 226, 537, 561, 598, 621
BssMI GATC 5 cut(s) 207, 212, 450, 567, 615
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 6, 598
Bst6I CTCTTC 3 cut(s) 200, 407, 593
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 495, 681
BstDSI CCRYGG 3 cut(s) 537, 561, 621
BstF5I GGATG 3 cut(s) 75, 135, 315
BstFNI CGCG 3 cut(s) 90, 118, 705
BstH2I RGCGCY 2 cut(s) 60, 104
BstHHI GCGC 4 cut(s) 59, 103, 120, 679
BstKTI GATC 5 cut(s) 210, 215, 453, 570, 618
BstMBI GATC 5 cut(s) 207, 212, 450, 567, 615
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 499, 626
BstNSI RCATGY 2 cut(s) 391, 493
BstSCI CCNGG 4 cut(s) 226, 339, 368, 497
BstUI CGCG 3 cut(s) 90, 118, 705
BstV1I GCAGC 3 cut(s) 77, 565, 613
BstV2I GAAGAC 2 cut(s) 475, 625
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 204, 373
BtgI CCRYGG 3 cut(s) 537, 561, 621
BtgZI GCGATG 2 cut(s) 686, 708
BtsCI GGATG 3 cut(s) 75, 135, 315
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 495, 681
CfoI GCGC 4 cut(s) 59, 103, 120, 679
Cfr13I GGNCC 5 cut(s) 203, 333, 346, 361, 371
CseI GACGC 2 cut(s) 79, 96
Csp6I GTAC 1 cut(s) 531
CviAII CATG 4 cut(s) 145, 388, 490, 670
CviQI GTAC 1 cut(s) 531
DinI GGCGCC 1 cut(s) 102
DpnI GATC 5 cut(s) 209, 214, 452, 569, 617
DpnII GATC 5 cut(s) 207, 212, 450, 567, 615
Eam1104I CTCTTC 3 cut(s) 200, 407, 593
EarI CTCTTC 3 cut(s) 200, 407, 593
EciI GGCGGA 2 cut(s) 154, 226
Eco130I CCWWGG 2 cut(s) 6, 598
Eco24I GRGCYC 2 cut(s) 261, 669
Eco47I GGWCC 3 cut(s) 333, 346, 361
Eco57I CTGAAG 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 6, 598
EcoT38I GRGCYC 2 cut(s) 261, 669
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 6, 598
FaeI CATG 4 cut(s) 148, 391, 493, 673
FaiI YATR 7 cut(s) 146, 389, 440, 491, 554, 671, 720
FaqI GGGAC 3 cut(s) 5, 209, 578
FatI CATG 4 cut(s) 144, 387, 489, 669
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 46, 66, 168, 171, 232, 579, 604, 627, 706
FokI GGATG 3 cut(s) 62, 122, 302
FriOI GRGCYC 2 cut(s) 261, 669
Fsp4HI GCNGC 9 cut(s) 46, 66, 168, 171, 232, 579, 604, 627, 706
FspBI CTAG 2 cut(s) 54, 651
GlaI GCGC 4 cut(s) 58, 102, 119, 678
GluI GCNGC 9 cut(s) 46, 66, 168, 171, 232, 579, 604, 627, 706
HaeII RGCGCY 2 cut(s) 60, 104
HaeIII GGCC 2 cut(s) 204, 373
HapII CCGG 6 cut(s) 228, 331, 341, 369, 417, 498
HgaI GACGC 2 cut(s) 79, 96
HhaI GCGC 4 cut(s) 59, 103, 120, 679
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 148, 391, 493, 673
Hin6I GCGC 4 cut(s) 57, 101, 118, 677
HinP1I GCGC 4 cut(s) 57, 101, 118, 677
HinfI GANTC 1 cut(s) 356
HpaII CCGG 6 cut(s) 228, 331, 341, 369, 417, 498
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 3 cut(s) 200, 212, 361
Hpy188III TCNNGA 3 cut(s) 515, 613, 730
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 6 cut(s) 65, 90, 95, 181, 184, 458
HpyAV CCTTC 2 cut(s) 160, 619
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 2 cut(s) 523, 660
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 499, 626
HpySE526I ACGT 1 cut(s) 533
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 148, 391, 493, 673
HspAI GCGC 4 cut(s) 57, 101, 118, 677
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 5 cut(s) 207, 212, 450, 567, 615
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 2 cut(s) 239, 256
Lsp1109I GCAGC 3 cut(s) 77, 565, 613
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 54, 651
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 390, 503
MalI GATC 5 cut(s) 209, 214, 452, 569, 617
MboI GATC 5 cut(s) 207, 212, 450, 567, 615
MboII GAAGA 6 cut(s) 187, 394, 460, 475, 580, 625
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 261, 669
MluCI AATT 2 cut(s) 294, 423
MluI ACGCGT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 360, 430
MseI TTAA 1 cut(s) 710
MspI CCGG 6 cut(s) 228, 331, 341, 369, 417, 498
MspR9I CCNGG 4 cut(s) 228, 341, 370, 499
MvnI CGCG 3 cut(s) 90, 118, 705
MwoI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 499, 626
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 4 cut(s) 228, 341, 370, 499
NdeII GATC 5 cut(s) 207, 212, 450, 567, 615
NlaIII CATG 4 cut(s) 148, 391, 493, 673
NlaIV GGNNCC 6 cut(s) 102, 163, 214, 235, 258, 607
NmuCI GTSAC 1 cut(s) 390
NspI RCATGY 2 cut(s) 391, 493
PciI ACATGT 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 593
PcsI WCGNNNNNNNCGW 2 cut(s) 450, 513
PkrI GCNGC 9 cut(s) 47, 67, 169, 172, 233, 580, 605, 628, 707
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 350
PscI ACATGT 1 cut(s) 387
PspN4I GGNNCC 6 cut(s) 102, 163, 214, 235, 258, 607
PspPI GGNCC 5 cut(s) 203, 333, 346, 361, 371
PsuI RGATCY 1 cut(s) 212
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 9 cut(s) 46, 66, 168, 171, 232, 579, 604, 627, 706
Sau3AI GATC 5 cut(s) 207, 212, 450, 567, 615
Sau96I GGNCC 5 cut(s) 203, 333, 346, 361, 371
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 4 cut(s) 228, 341, 370, 499
SduI GDGCHC 2 cut(s) 261, 669
SetI ASST 7 cut(s) 125, 131, 276, 366, 522, 536, 611
SfaNI GCATC 1 cut(s) 709
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 3 cut(s) 333, 346, 361
Sse9I AATT 2 cut(s) 294, 423
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 2 cut(s) 54, 651
StyD4I CCNGG 4 cut(s) 226, 339, 368, 497
StyI CCWWGG 2 cut(s) 6, 598
TaiI ACGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 153, 246, 516
TasI AATT 2 cut(s) 294, 423
TauI GCSGC 6 cut(s) 48, 170, 173, 234, 606, 708
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 3 cut(s) 65, 578, 626
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 133, 450
TspGWI ACGGA 3 cut(s) 211, 526, 702
VpaK11BI GGWCC 3 cut(s) 333, 346, 361
XapI RAATTY 2 cut(s) 294, 423
XceI RCATGY 2 cut(s) 391, 493
XspI CTAG 2 cut(s) 54, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.