RLG00000024039

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007103
Physical Location & Seq
Reverse (-)
31059764 .. 31060556
793 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024039

Sequence Viewer

Length: 768 bp
ATGACGAAGGAGTTCGCCGTACCACCGGTGGTGTTTCCCTCCGGTGGAAACCCAAGCGCCGGATCCAACAACATCCAGCAACGCCGCGTCGCGACGGCGCCGTTTCAACCGCCTCGATCCTCAACCTCCAGCATCCCCTTCATGTCCTTCGACATTGGCTCCGCCGCCGCCTCCTCCTCCTCCTCCGGCCCCCTATTCGGCGGCCCCATCGGCTCAGGCGGTTCGGTTCCCGGTGGCACAAGCTTCGAGGACGAGGAGCCACTCCTCGACGAGCTCGGCATCCATCCAGATCAAATATGGAGAAAGACCAAGTCGATCCTCAATCCCTTCCGGGCCAACCCGACCGTCCACAAGGACTCGGACCTTTCCGGCCCGATCCTCCTCTACATGTCCCTCTGCCTCTTTCAATTGCTCGCCGGGAAGATCCAATTCGGCGTGATTCTCGGCTGGATCGTCGTCTCCTCCATCTTCCTCTACGTCGTCTTCAACATGTTGGCCGGCCGGAATGGGAACCTCGACCTGCACAGGTGTACGAGCGTCGTCGGCTACTGTTTGTTACCGGTGGTGATTTTATCGGCTGCCTCGCTGTTCGTGCCGCAAGGCGGGACTTTCAGGTTCGCGGTGGCCGGGGTCTTTGTTTTGTGGGCCACTAGGGTTTGTACGGCCCTTATGGTTGCTCTTGCTGATGGAGGTGACGAGCATCGTGGGCTGATAGCGTATGCGTGCTTCTTGATTTACACTCTGTTTTCGCTTCTCGTTATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

256

Amino Acids

27.12

Weight (kDa)

6.88

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 106 - 253 4.5e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 97
AccII CGCG 3 cut(s) 87, 92, 620
AclWI GGATC 7 cut(s) 57, 70, 111, 310, 370, 418, 458
AcoI YGGCCR 3 cut(s) 495, 499, 624
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 3 cut(s) 21, 532, 661
AfiI CCNNNNNNNGG 4 cut(s) 44, 59, 197, 602
AflIII ACRYGT 2 cut(s) 387, 489
AgeI ACCGGT 2 cut(s) 25, 559
AgsI TTSAA 3 cut(s) 107, 407, 487
AluBI AGCT 2 cut(s) 243, 274
AluI AGCT 2 cut(s) 243, 274
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 7 cut(s) 57, 70, 111, 310, 370, 418, 458
AoxI GGCC 9 cut(s) 187, 202, 333, 370, 495, 499, 624, 645, 663
ApeKI GCWGC 1 cut(s) 578
AsiGI ACCGGT 2 cut(s) 25, 559
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 59, 100
AspS9I GGNCC 7 cut(s) 188, 203, 333, 361, 371, 645, 664
AsuC2I CCSGG 4 cut(s) 231, 332, 418, 628
AsuHPI GGTGA 2 cut(s) 577, 704
AvaII GGWCC 1 cut(s) 361
BamHI GGATCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 276
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 565
BccI CCATC 4 cut(s) 215, 291, 473, 680
BceAI ACGGC 4 cut(s) 2, 85, 111, 678
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BcnI CCSGG 4 cut(s) 231, 332, 418, 628
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 651
BfoI RGCGCY 2 cut(s) 60, 101
BfuAI ACCTGC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 6 cut(s) 85, 165, 168, 202, 579, 596
BlsI GCNGC 6 cut(s) 86, 166, 169, 203, 580, 597
Bme1390I CCNGG 4 cut(s) 231, 332, 418, 628
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 7 cut(s) 188, 203, 333, 361, 371, 645, 664
BmiI GGNNCC 8 cut(s) 64, 99, 160, 190, 205, 228, 258, 512
BmrFI CCNGG 4 cut(s) 231, 332, 418, 628
BmsI GCATC 3 cut(s) 141, 288, 709
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 214
BpuMI CCSGG 4 cut(s) 231, 332, 418, 628
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 3 cut(s) 25, 41, 559
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 59, 197, 602
Bse118I RCCGGY 3 cut(s) 25, 497, 559
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 4 cut(s) 72, 132, 279, 283
BseLI CCNNNNNNNGG 4 cut(s) 44, 59, 197, 602
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 8 cut(s) 163, 166, 169, 172, 254, 269, 371, 451
BseX3I CGGCCG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 3 cut(s) 87, 92, 620
Bsh1285I CGRYCG 2 cut(s) 345, 502
BshFI GGCC 9 cut(s) 189, 204, 335, 372, 497, 501, 626, 647, 665
BshNI GGYRCC 1 cut(s) 97
BshTI ACCGGT 2 cut(s) 25, 559
BsiEI CGRYCG 2 cut(s) 345, 502
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 2 cut(s) 376, 619
BslI CCNNNNNNNGG 4 cut(s) 44, 59, 197, 602
BsmAI GTCTC 1 cut(s) 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 376, 619
BsnI GGCC 9 cut(s) 189, 204, 335, 372, 497, 501, 626, 647, 665
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
Bsp68I TCGCGA 1 cut(s) 92
BspANI GGCC 9 cut(s) 189, 204, 335, 372, 497, 501, 626, 647, 665
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 3 cut(s) 87, 92, 620
BspLI GGNNCC 8 cut(s) 64, 99, 160, 190, 205, 228, 258, 512
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 7 cut(s) 57, 70, 111, 310, 370, 418, 458
BspT107I GGYRCC 1 cut(s) 97
BsrFI RCCGGY 3 cut(s) 25, 497, 559
BssAI RCCGGY 3 cut(s) 25, 497, 559
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
BssNI GRCGYC 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 346, 551
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 414, 499, 724
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 4 cut(s) 72, 132, 279, 283
BstFNI CGCG 3 cut(s) 87, 92, 620
BstH2I RGCGCY 2 cut(s) 60, 101
BstHHI GCGC 2 cut(s) 59, 100
BstKTI GATC 7 cut(s) 65, 119, 292, 318, 378, 426, 453
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
BstMCI CGRYCG 2 cut(s) 345, 502
BstMWI GCNNNNNNNGC 4 cut(s) 210, 543, 592, 706
BstNSI RCATGY 2 cut(s) 391, 493
BstSCI CCNGG 4 cut(s) 229, 330, 416, 626
BstUI CGCG 3 cut(s) 87, 92, 620
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 62, 423
BstYI RGATCY 2 cut(s) 62, 423
BstZI CGGCCG 1 cut(s) 499
BsuRI GGCC 9 cut(s) 189, 204, 335, 372, 497, 501, 626, 647, 665
BtsCI GGATG 4 cut(s) 72, 132, 279, 283
BtuMI TCGCGA 1 cut(s) 92
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 3 cut(s) 414, 499, 724
CfoI GCGC 2 cut(s) 59, 100
Cfr10I RCCGGY 3 cut(s) 25, 497, 559
Cfr13I GGNCC 7 cut(s) 188, 203, 333, 361, 371, 645, 664
CseI GACGC 2 cut(s) 76, 526
Csp6I GTAC 3 cut(s) 20, 531, 660
CspAI ACCGGT 2 cut(s) 25, 559
CviAII CATG 3 cut(s) 142, 388, 490
CviQI GTAC 3 cut(s) 20, 531, 660
DdeI CTNAG 1 cut(s) 214
DinI GGCGCC 1 cut(s) 99
DpnI GATC 7 cut(s) 64, 118, 291, 317, 377, 425, 452
DpnII GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
EaeI YGGCCR 3 cut(s) 495, 499, 624
EagI CGGCCG 1 cut(s) 499
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 274
EclXI CGGCCG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 99
EheI GGCGCC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 3 cut(s) 145, 391, 493
FaiI YATR 7 cut(s) 143, 298, 389, 491, 671, 720, 761
FaqI GGGAC 2 cut(s) 376, 619
FatI CATG 3 cut(s) 141, 387, 489
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 6 cut(s) 85, 165, 168, 202, 579, 596
FokI GGATG 4 cut(s) 59, 119, 266, 270
FriOI GRGCYC 1 cut(s) 276
FseI GGCCGGCC 1 cut(s) 501
Fsp4HI GCNGC 6 cut(s) 85, 165, 168, 202, 579, 596
FspBI CTAG 1 cut(s) 651
GlaI GCGC 2 cut(s) 58, 99
GluI GCNGC 6 cut(s) 85, 165, 168, 202, 579, 596
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 2 cut(s) 60, 101
HaeIII GGCC 9 cut(s) 189, 204, 335, 372, 497, 501, 626, 647, 665
HgaI GACGC 2 cut(s) 76, 526
HhaI GCGC 2 cut(s) 59, 100
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 3 cut(s) 145, 391, 493
Hin6I GCGC 2 cut(s) 57, 98
HinP1I GCGC 2 cut(s) 57, 98
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 2 cut(s) 356, 439
HphI GGTGA 2 cut(s) 577, 704
Hpy166II GTNNAC 2 cut(s) 349, 531
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 3 cut(s) 91, 287, 730
Hpy8I GTNNAC 2 cut(s) 349, 531
Hpy99I CGWCG 7 cut(s) 92, 97, 272, 458, 482, 542, 545
HpyAV CCTTC 3 cut(s) 148, 157, 337
HpyCH4III ACNGT 2 cut(s) 346, 551
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 543, 592, 706
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 145, 391, 493
HspAI GCGC 2 cut(s) 57, 98
KasI GGCGCC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 497
KroNI GCCGGC 1 cut(s) 499
Kzo9I GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
LmnI GCTCC 2 cut(s) 164, 256
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 3 cut(s) 141, 288, 709
MaeI CTAG 1 cut(s) 651
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 555, 692
MalI GATC 7 cut(s) 64, 118, 291, 317, 377, 425, 452
MboI GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
MboII GAAGA 3 cut(s) 433, 460, 475
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 62, 423
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 407, 428
Mly113I GGCGCC 1 cut(s) 98
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 11
MspR9I CCNGG 4 cut(s) 231, 332, 418, 628
MunI CAATTG 1 cut(s) 407
MvnI CGCG 3 cut(s) 87, 92, 620
MwoI GCNNNNNNNGC 4 cut(s) 210, 543, 592, 706
NaeI GCCGGC 1 cut(s) 499
NarI GGCGCC 1 cut(s) 98
NciI CCSGG 4 cut(s) 231, 332, 418, 628
NdeII GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
NgoMIV GCCGGC 1 cut(s) 497
NlaIII CATG 3 cut(s) 145, 391, 493
NlaIV GGNNCC 8 cut(s) 64, 99, 160, 190, 205, 228, 258, 512
NmeAIII GCCGAG 2 cut(s) 255, 423
NmuCI GTSAC 1 cut(s) 692
NruI TCGCGA 1 cut(s) 92
NspI RCATGY 2 cut(s) 391, 493
PciI ACATGT 2 cut(s) 387, 489
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 499
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 439
PflFI GACNNNGTC 1 cut(s) 310
PinAI ACCGGT 2 cut(s) 25, 559
PkrI GCNGC 6 cut(s) 86, 166, 169, 203, 580, 597
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 350
PscI ACATGT 2 cut(s) 387, 489
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 8 cut(s) 64, 99, 160, 190, 205, 228, 258, 512
PspPI GGNCC 7 cut(s) 188, 203, 333, 361, 371, 645, 664
PsuI RGATCY 2 cut(s) 62, 423
PsyI GACNNNGTC 1 cut(s) 310
RigI GGCCGGCC 1 cut(s) 501
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 3 cut(s) 21, 532, 661
RsaNI GTAC 3 cut(s) 20, 531, 660
SacI GAGCTC 1 cut(s) 276
SatI GCNGC 6 cut(s) 85, 165, 168, 202, 579, 596
Sau3AI GATC 7 cut(s) 62, 116, 289, 315, 375, 423, 450
Sau96I GGNCC 7 cut(s) 188, 203, 333, 361, 371, 645, 664
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 4 cut(s) 231, 332, 418, 628
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 3 cut(s) 141, 288, 709
SfoI GGCGCC 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 1 cut(s) 361
Sse9I AATT 2 cut(s) 407, 428
SspDI GGCGCC 1 cut(s) 97
SspMI CTAG 1 cut(s) 651
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 4 cut(s) 229, 330, 416, 626
TaaI ACNGT 2 cut(s) 346, 551
TaiI ACGT 1 cut(s) 480
TaqI TCGA 6 cut(s) 115, 150, 246, 267, 314, 516
TasI AATT 2 cut(s) 407, 428
TauI GCSGC 5 cut(s) 87, 167, 170, 204, 598
TfiI GAWTC 1 cut(s) 439
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 2 cut(s) 391, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.