Rroxscaffold_6G00393080

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007103
Physical Location & Seq
Reverse (-)
12859224 .. 12860105
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393080.1

Sequence Viewer

Length: 717 bp
ATGTCCTTCGACATAGGCTCAGCCGCCACCGCTTCCACCTCCGGCAGCTTTTACGGCGGTCCCATCGGCTCCGGCTCCTCCTCCCTCCCCGGAGCCACCGGCTTCGAAGACGAGGAGCCTCTTCTCGACGAGCTCGGTATTCACCCCGATCAAATCTGGCGGAAGACCAAGTCCATTCTCCACCCCTTCCGGGTCAACCCGGACCTCCACAAGGAGTCCGACATGTCCGGGCCCTTCCTCCTCTACGTCTCCCTCTGCCTCTTTCAATTACTCGCCGGCAAGATCCAATTCGGTGTAATACTCGGCTGGATCATCGTCTCCTTCTTCTTCCTGTACGTCGTCGTCAACATGTTGGCGGGACGCAACGGCAACCTAGAGCTGCACAGGTGCGCCAGCGTCGTTGGCTACTCTATGTTGCCGGTGGTGATTTTATCGGCTACCATGCTCTTTGTGCCTCAAGGCGGGAGTTTCGTGTTCGCAGTGGCTGCCGTGTTTGTTTTATGGGCCACAAGGGTTTGCACCGGCCTCATGGTTGCGCTCGTCGATGGCGGTGATGAGCATCGCGGCCTCATTGCGTTGATTCTATATGCCCCTGTGGTTGGGTGTTTTGAGTTTAGGTTGGAAAATGTAGAAAACTGGAGATATTATGGTTGGTTGGTTTTGGCTTGGAAAGGTTTGCATATGGTTTACTTCGCTGTTAATGTTACTGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

238

Amino Acids

26.01

Weight (kDa)

5.62

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 58 - 196 1.6e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 564
AciI CCGC 8 cut(s) 24, 30, 57, 160, 356, 462, 549, 564
AclWI GGATC 2 cut(s) 277, 317
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 4 cut(s) 190, 211, 461, 599
AflIII ACRYGT 2 cut(s) 222, 348
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 3 cut(s) 48, 133, 379
AluI AGCT 3 cut(s) 48, 133, 379
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 253, 322
AlwI GGATC 2 cut(s) 277, 317
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 4 cut(s) 230, 504, 523, 565
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 45, 379, 485
AspLEI GCGC 2 cut(s) 392, 538
AspS9I GGNCC 5 cut(s) 59, 202, 230, 231, 504
AsuC2I CCSGG 4 cut(s) 90, 191, 200, 229
AsuHPI GGTGA 3 cut(s) 134, 436, 563
AsuII TTCGAA 1 cut(s) 105
AvaII GGWCC 2 cut(s) 59, 202
BaeGI GKGCMC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 135, 234
BbsI GAAGAC 2 cut(s) 114, 170
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 57, 366, 472
BccI CCATC 2 cut(s) 71, 539
BceAI ACGGC 3 cut(s) 70, 382, 473
BcnI CCSGG 4 cut(s) 90, 191, 200, 229
BcoDI GTCTC 2 cut(s) 253, 322
BfaI CTAG 1 cut(s) 374
BisI GCNGC 5 cut(s) 24, 46, 380, 486, 565
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 5 cut(s) 25, 47, 381, 487, 566
Bme1390I CCNGG 4 cut(s) 90, 191, 200, 229
Bme18I GGWCC 2 cut(s) 59, 202
BmgT120I GGNCC 5 cut(s) 59, 202, 230, 231, 504
BmiI GGNNCC 6 cut(s) 61, 70, 76, 94, 117, 232
BmrFI CCNGG 4 cut(s) 90, 191, 200, 229
BmsI GCATC 1 cut(s) 568
BpiI GAAGAC 2 cut(s) 114, 170
BpmI CTGGAG 1 cut(s) 658
Bpu1102I GCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 4 cut(s) 90, 191, 200, 229
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 211, 461, 599
Bse118I RCCGGY 4 cut(s) 98, 275, 418, 521
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 4 cut(s) 190, 211, 461, 599
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 4 cut(s) 67, 70, 128, 230
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 3 cut(s) 57, 366, 472
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 4 cut(s) 232, 506, 525, 567
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 2 cut(s) 45, 372
BslI CCNNNNNNNGG 4 cut(s) 190, 211, 461, 599
BsmAI GTCTC 2 cut(s) 253, 322
BsmBI CGTCTC 2 cut(s) 253, 322
BsmFI GGGAC 2 cut(s) 45, 372
BsnI GGCC 4 cut(s) 232, 506, 525, 567
Bsp119I TTCGAA 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 135, 234
Bsp143I GATC 3 cut(s) 148, 282, 309
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 8 cut(s) 24, 30, 57, 160, 356, 462, 549, 564
BspANI GGCC 4 cut(s) 232, 506, 525, 567
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 6 cut(s) 61, 70, 76, 94, 117, 232
BspPI GGATC 2 cut(s) 277, 317
BspT104I TTCGAA 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 4 cut(s) 98, 275, 418, 521
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 4 cut(s) 98, 275, 418, 521
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 148, 282, 309
Bst6I CTCTTC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 277, 394
BstDEI CTNAG 1 cut(s) 19
BstENI CCTNNNNNAGG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 2 cut(s) 392, 538
BstKTI GATC 3 cut(s) 151, 285, 312
BstMAI GTCTC 2 cut(s) 253, 322
BstMBI GATC 3 cut(s) 148, 282, 309
BstMWI GCNNNNNNNGC 5 cut(s) 29, 54, 402, 451, 485
BstNSI RCATGY 2 cut(s) 226, 352
BstSCI CCNGG 4 cut(s) 88, 189, 198, 227
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 3 cut(s) 57, 366, 472
BstV2I GAAGAC 2 cut(s) 114, 170
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 4 cut(s) 232, 506, 525, 567
BtgZI GCGATG 1 cut(s) 545
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 277, 394
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 392, 538
Cfr10I RCCGGY 4 cut(s) 98, 275, 418, 521
Cfr13I GGNCC 5 cut(s) 59, 202, 230, 231, 504
CseI GACGC 2 cut(s) 369, 385
Csp6I GTAC 1 cut(s) 334
CviAII CATG 4 cut(s) 223, 349, 442, 529
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 19
DpnI GATC 3 cut(s) 150, 284, 311
DpnII GATC 3 cut(s) 148, 282, 309
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 135, 234
Eco47I GGWCC 2 cut(s) 59, 202
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 135, 234
Esp3I CGTCTC 2 cut(s) 253, 322
FaeI CATG 4 cut(s) 226, 352, 445, 532
FaqI GGGAC 2 cut(s) 45, 372
FatI CATG 4 cut(s) 222, 348, 441, 528
FauI CCCGC 2 cut(s) 349, 455
FauNDI CATATG 1 cut(s) 681
Fnu4HI GCNGC 5 cut(s) 24, 46, 380, 486, 565
FriOI GRGCYC 2 cut(s) 135, 234
Fsp4HI GCNGC 5 cut(s) 24, 46, 380, 486, 565
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 391, 537
GluI GCNGC 5 cut(s) 24, 46, 380, 486, 565
GsuI CTGGAG 1 cut(s) 658
HaeIII GGCC 4 cut(s) 232, 506, 525, 567
HgaI GACGC 2 cut(s) 369, 385
HhaI GCGC 2 cut(s) 392, 538
Hin1II CATG 4 cut(s) 226, 352, 445, 532
Hin6I GCGC 2 cut(s) 390, 536
HinP1I GCGC 2 cut(s) 390, 536
HincII GTYRAC 2 cut(s) 196, 346
HindII GTYRAC 2 cut(s) 196, 346
HinfI GANTC 2 cut(s) 215, 580
HphI GGTGA 3 cut(s) 134, 436, 563
Hpy166II GTNNAC 3 cut(s) 196, 346, 688
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 3 cut(s) 196, 346, 688
Hpy99I CGWCG 5 cut(s) 131, 341, 344, 401, 545
HpyAV CCTTC 4 cut(s) 16, 196, 244, 331
HpyCH4IV ACGT 2 cut(s) 246, 336
HpyCH4V TGCA 3 cut(s) 382, 519, 679
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 54, 402, 451, 485
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 2 cut(s) 246, 336
Hsp92II CATG 4 cut(s) 226, 352, 445, 532
HspAI GCGC 2 cut(s) 390, 536
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 148, 282, 309
LmnI GCTCC 4 cut(s) 74, 80, 92, 115
Lsp1109I GCAGC 3 cut(s) 57, 366, 472
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 374
MaeII ACGT 2 cut(s) 246, 336
MaeIII GTNAC 1 cut(s) 703
MalI GATC 3 cut(s) 150, 284, 311
MboI GATC 3 cut(s) 148, 282, 309
MboII GAAGA 5 cut(s) 113, 119, 175, 316, 319
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 135, 234
MluCI AATT 2 cut(s) 266, 287
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 243, 600
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 1 cut(s) 699
MspR9I CCNGG 4 cut(s) 90, 191, 200, 229
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 5 cut(s) 29, 54, 402, 451, 485
NaeI GCCGGC 1 cut(s) 277
NciI CCSGG 4 cut(s) 90, 191, 200, 229
NdeI CATATG 1 cut(s) 681
NdeII GATC 3 cut(s) 148, 282, 309
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 226, 352, 445, 532
NlaIV GGNNCC 6 cut(s) 61, 70, 76, 94, 117, 232
NmeAIII GCCGAG 1 cut(s) 282
NspI RCATGY 2 cut(s) 226, 352
NspV TTCGAA 1 cut(s) 105
PciI ACATGT 2 cut(s) 222, 348
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 580
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 5 cut(s) 25, 47, 381, 487, 566
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 2 cut(s) 222, 348
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 6 cut(s) 61, 70, 76, 94, 117, 232
PspOMI GGGCCC 1 cut(s) 230
PspPI GGNCC 5 cut(s) 59, 202, 230, 231, 504
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 5 cut(s) 24, 46, 380, 486, 565
Sau3AI GATC 3 cut(s) 148, 282, 309
Sau96I GGNCC 5 cut(s) 59, 202, 230, 231, 504
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 4 cut(s) 90, 191, 200, 229
SduI GDGCHC 2 cut(s) 135, 234
SfaNI GCATC 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 2 cut(s) 59, 202
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 2 cut(s) 266, 287
SsiI CCGC 8 cut(s) 24, 30, 57, 160, 356, 462, 549, 564
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 4 cut(s) 88, 189, 198, 227
TaiI ACGT 2 cut(s) 249, 339
TaqI TCGA 4 cut(s) 9, 105, 126, 543
TasI AATT 2 cut(s) 266, 287
TauI GCSGC 2 cut(s) 26, 567
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 1 cut(s) 486
TseI GCWGC 3 cut(s) 45, 379, 485
TspRI CASTG 1 cut(s) 486
Tth111I GACNNNGTC 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 59, 202
XagI CCTNNNNNAGG 1 cut(s) 209
XceI RCATGY 2 cut(s) 226, 352
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.