Rh3DG331600

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007103
Physical Location & Seq
Forward (+)
36770408 .. 36774083
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG331600.1

Sequence Viewer

Length: 774 bp
ATGGCGAAGGAGGCGAAGCAGTTCGCCATCCCCCCGGTGGTTTTCCCCTCCGGCGGAAACCCCAGTGCCGGATCCAACATCCAGCAACGCCGCGTCCCAACGGCGCCGTTTCAACCACCCCGATCCTCCGCCTCCAGCATCCCCTTCATGTCCTTCGACATAGGCTCAGCCGCCGCCGCTTCCACCTCCGGCAGCTTTTACGGCGGTCCCATCGGCTCCGGCTCCTCCGCCCTCCCCGGAGGCACCGGCTTCGAAGACGAGGAGCCTCTTCTCGACGAGCTCGGTATTCACCCCGATCAAATCTGGCGGAAGACCAAGTCCATTCTCCACCCCTTCCGGGTCAACCCGGACCTCCACAAGGAGTCCGACATGTCCGGCCCCTTCCTCCTCTACGTCTCCCTCTGCCTCTTTCAGTTACTCGCCGGCAAGATCCAATTCGGCGTAATACTCGGCTGGATCATCGTCTCCTTCTTCTTCCTGTACGTCGTCGTCAACATGTTGGCGGGCCGTAACGGCAACCTAGAGCTGCACAGGTGCGCCAGCGTCGTTGGTTACTCTCTGTTGCCGGTGGTGATTTTATCGGCCACCATGCTCTTTGTGCCTCAAGGCGGGAGTTTCGTGTTCGCAGTGGCTGCCGTGTTTGTTTTATGGGCCACAAGGGTTTGCACCGGCCTCATGGTTGCGCTCGTCGACGGCGGTGATGAGCATCGCGGCCTCATTGCGTATGCTTGTTTCTTGATTTACACTCTCTTTTCATTTCTGGTTATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

257

Amino Acids

27.56

Weight (kDa)

6.5

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 107 - 255 4.2e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 103, 242
AccI GTMKAC 1 cut(s) 690
AccII CGCG 2 cut(s) 93, 711
AclWI GGATC 5 cut(s) 66, 79, 117, 424, 464
AcoI YGGCCR 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 337, 358, 608
AflIII ACRYGT 2 cut(s) 369, 495
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 3 cut(s) 195, 280, 526
AluI AGCT 3 cut(s) 195, 280, 526
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 400, 469
AlwI GGATC 5 cut(s) 66, 79, 117, 424, 464
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 6 cut(s) 376, 505, 582, 651, 670, 712
ApeKI GCWGC 3 cut(s) 192, 526, 632
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 3 cut(s) 106, 539, 685
AspS9I GGNCC 5 cut(s) 206, 349, 377, 505, 651
AsuC2I CCSGG 4 cut(s) 35, 237, 338, 347
AsuHPI GGTGA 3 cut(s) 281, 583, 710
AsuII TTCGAA 1 cut(s) 252
AvaII GGWCC 2 cut(s) 206, 349
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 103, 242
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 261, 317
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 204, 513, 619
BccI CCATC 2 cut(s) 35, 218
BceAI ACGGC 7 cut(s) 91, 117, 217, 492, 529, 620, 709
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BcnI CCSGG 4 cut(s) 35, 237, 338, 347
BcoDI GTCTC 2 cut(s) 400, 469
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 513
BisI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 527, 633, 712
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 528, 634, 713
Bme1390I CCNGG 4 cut(s) 35, 237, 338, 347
Bme18I GGWCC 2 cut(s) 206, 349
BmgT120I GGNCC 5 cut(s) 206, 349, 377, 505, 651
BmiI GGNNCC 8 cut(s) 73, 105, 208, 217, 223, 244, 264, 379
BmrFI CCNGG 4 cut(s) 35, 237, 338, 347
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 147, 715
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 261, 317
BpmI CTGGAG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 4 cut(s) 35, 237, 338, 347
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 33, 235
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 53, 68, 337, 358, 608
Bse118I RCCGGY 4 cut(s) 245, 422, 565, 668
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 717
Bse8I GATNNNNATC 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 33, 235
BseGI GGATG 3 cut(s) 27, 78, 138
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 337, 358, 608
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 3 cut(s) 214, 275, 377
BseXI GCAGC 3 cut(s) 204, 513, 619
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 2 cut(s) 93, 711
BshFI GGCC 6 cut(s) 378, 507, 584, 653, 672, 714
BshNI GGYRCC 2 cut(s) 103, 242
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 2 cut(s) 80, 192
BslI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 337, 358, 608
BsmAI GTCTC 2 cut(s) 400, 469
BsmBI CGTCTC 2 cut(s) 400, 469
BsmFI GGGAC 2 cut(s) 80, 192
BsnI GGCC 6 cut(s) 378, 507, 584, 653, 672, 714
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 5 cut(s) 71, 122, 295, 429, 456
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 6 cut(s) 378, 507, 584, 653, 672, 714
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 2 cut(s) 93, 711
BspLI GGNNCC 8 cut(s) 73, 105, 208, 217, 223, 244, 264, 379
BspPI GGATC 5 cut(s) 66, 79, 117, 424, 464
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 2 cut(s) 103, 242
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 4 cut(s) 245, 422, 565, 668
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 4 cut(s) 245, 422, 565, 668
BssECI CCNNGG 2 cut(s) 33, 235
BssMI GATC 5 cut(s) 71, 122, 295, 429, 456
BssNI GRCGYC 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 424, 505, 541
BstDEI CTNAG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 27, 78, 138
BstFNI CGCG 2 cut(s) 93, 711
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 106, 539, 685
BstKTI GATC 5 cut(s) 74, 125, 298, 432, 459
BstMAI GTCTC 2 cut(s) 400, 469
BstMBI GATC 5 cut(s) 71, 122, 295, 429, 456
BstMWI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 513, 598, 632
BstNSI RCATGY 2 cut(s) 373, 499
BstSCI CCNGG 4 cut(s) 33, 235, 336, 345
BstUI CGCG 2 cut(s) 93, 711
BstV1I GCAGC 3 cut(s) 204, 513, 619
BstV2I GAAGAC 2 cut(s) 261, 317
BstX2I RGATCY 2 cut(s) 71, 429
BstYI RGATCY 2 cut(s) 71, 429
BsuRI GGCC 6 cut(s) 378, 507, 584, 653, 672, 714
BtgZI GCGATG 1 cut(s) 692
BtsCI GGATG 3 cut(s) 27, 78, 138
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 70, 633
Cac8I GCNNGC 3 cut(s) 424, 505, 541
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 3 cut(s) 106, 539, 685
Cfr10I RCCGGY 4 cut(s) 245, 422, 565, 668
Cfr13I GGNCC 5 cut(s) 206, 349, 377, 505, 651
CseI GACGC 2 cut(s) 82, 532
Csp6I GTAC 1 cut(s) 481
CviAII CATG 5 cut(s) 148, 370, 496, 589, 676
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 166
DinI GGCGCC 1 cut(s) 105
DpnI GATC 5 cut(s) 73, 124, 297, 431, 458
DpnII GATC 5 cut(s) 71, 122, 295, 429, 456
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 4 cut(s) 69, 118, 217, 322
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 206, 349
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 400, 469
FaeI CATG 5 cut(s) 151, 373, 499, 592, 679
FaiI YATR 9 cut(s) 149, 161, 371, 497, 590, 649, 677, 726, 767
FaqI GGGAC 2 cut(s) 80, 192
FatI CATG 5 cut(s) 147, 369, 495, 588, 675
FauI CCCGC 2 cut(s) 496, 602
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 527, 633, 712
FokI GGATG 3 cut(s) 14, 65, 125
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 527, 633, 712
FspBI CTAG 1 cut(s) 521
GlaI GCGC 3 cut(s) 105, 538, 684
GluI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 527, 633, 712
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 6 cut(s) 378, 507, 584, 653, 672, 714
HgaI GACGC 2 cut(s) 82, 532
HhaI GCGC 3 cut(s) 106, 539, 685
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 151, 373, 499, 592, 679
Hin6I GCGC 3 cut(s) 104, 537, 683
HinP1I GCGC 3 cut(s) 104, 537, 683
HincII GTYRAC 3 cut(s) 343, 493, 691
HindII GTYRAC 3 cut(s) 343, 493, 691
HinfI GANTC 1 cut(s) 362
HphI GGTGA 3 cut(s) 281, 583, 710
Hpy166II GTNNAC 3 cut(s) 343, 493, 691
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 272, 736
Hpy8I GTNNAC 3 cut(s) 343, 493, 691
Hpy99I CGWCG 6 cut(s) 278, 488, 491, 548, 692, 695
HpyAV CCTTC 5 cut(s) 154, 163, 343, 391, 478
HpyCH4IV ACGT 2 cut(s) 393, 483
HpyCH4V TGCA 2 cut(s) 529, 666
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 513, 598, 632
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 393, 483
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 151, 373, 499, 592, 679
HspAI GCGC 3 cut(s) 104, 537, 683
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Kzo9I GATC 5 cut(s) 71, 122, 295, 429, 456
LmnI GCTCC 3 cut(s) 221, 227, 262
Lsp1109I GCAGC 3 cut(s) 204, 513, 619
LweI GCATC 2 cut(s) 147, 715
MaeI CTAG 1 cut(s) 521
MaeII ACGT 2 cut(s) 393, 483
MaeIII GTNAC 3 cut(s) 414, 509, 551
MalI GATC 5 cut(s) 73, 124, 297, 431, 458
MboI GATC 5 cut(s) 71, 122, 295, 429, 456
MboII GAAGA 5 cut(s) 260, 266, 322, 463, 466
MflI RGATCY 2 cut(s) 71, 429
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 434
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 99, 390
MroNI GCCGGC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 35, 237, 338, 347
MvnI CGCG 2 cut(s) 93, 711
MwoI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 513, 598, 632
NaeI GCCGGC 1 cut(s) 424
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 4 cut(s) 35, 237, 338, 347
NdeII GATC 5 cut(s) 71, 122, 295, 429, 456
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 5 cut(s) 151, 373, 499, 592, 679
NlaIV GGNNCC 8 cut(s) 73, 105, 208, 217, 223, 244, 264, 379
NmeAIII GCCGAG 1 cut(s) 429
NspI RCATGY 2 cut(s) 373, 499
NspV TTCGAA 1 cut(s) 252
PciI ACATGT 2 cut(s) 369, 495
PdiI GCCGGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 528, 634, 713
PleI GAGTC 1 cut(s) 370
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 2 cut(s) 369, 495
Psp124BI GAGCTC 1 cut(s) 282
PspN4I GGNNCC 8 cut(s) 73, 105, 208, 217, 223, 244, 264, 379
PspPI GGNCC 5 cut(s) 206, 349, 377, 505, 651
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 2 cut(s) 71, 429
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SacI GAGCTC 1 cut(s) 282
SalI GTCGAC 1 cut(s) 689
SatI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 527, 633, 712
Sau3AI GATC 5 cut(s) 71, 122, 295, 429, 456
Sau96I GGNCC 5 cut(s) 206, 349, 377, 505, 651
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 4 cut(s) 35, 237, 338, 347
SduI GDGCHC 1 cut(s) 282
SetI ASST 9 cut(s) 188, 197, 282, 354, 396, 486, 522, 528, 536
SfaNI GCATC 2 cut(s) 147, 715
SfoI GGCGCC 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 252
SgrDI CGTCGACG 1 cut(s) 689
SinI GGWCC 2 cut(s) 206, 349
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 1 cut(s) 434
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 1 cut(s) 521
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 33, 235, 336, 345
TaiI ACGT 2 cut(s) 396, 486
TaqI TCGA 4 cut(s) 156, 252, 273, 690
TasI AATT 1 cut(s) 434
TauI GCSGC 5 cut(s) 93, 173, 176, 179, 714
TscAI CASTG 2 cut(s) 70, 633
TseI GCWGC 3 cut(s) 192, 526, 632
TspDTI ATGAA 2 cut(s) 136, 744
TspRI CASTG 2 cut(s) 70, 633
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 206, 349
XagI CCTNNNNNAGG 1 cut(s) 356
XceI RCATGY 2 cut(s) 373, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.