Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007103

Physical Location & Seq

Genomic Coordinates Reverse (-)

20718310 .. 20720113

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTTTCGAGATCGGCTCCGCCGCCGCGTCCTCCTCTTTTGGCCCCCTCTTCGCGACCCTATCGTGTTCGGTGTCCCGGGTCCCCGGTGGCATAAGCTTCAATGACGAGGAGCCACTACTAGACGAGCTCGGTATCCACCCAGATCAAATATGGAGAAAGACTTGGTCGATCCTCAATCCCTTCCGAGCCAACCCAGCCGTCCATAAGGACATGGAACTTTCCGGCCCGATCCTCCTCTACATGTCCTCTTTCAACTTCTCGTCGGGAAGATCCAATTCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

96

Amino Acids

10.29

Weight (kDa)

5.11

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36300 AT3G52760
fragaria_vesca	FvH4_6g27040
malus_domestica	MD12G1023700.v1.1 MD14G1020900.v1.1
prunus_persica	Prupe.7G112800_v2.0.a1
pyrus_communis	pycom12g02210
rosa_chinensis	RchiOBHm_Chr3g0472991 RchiOBHm_Chr3g0491231
rosa_laevigata	RLG00000022852 RLG00000024039
rosa_multiflora	Rmu_co8300385.1_g000001 Rmu_sc0010986.1_g000006 Rmu_sc0014162.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393080
rosa_rugosa	Rorug03G0130500 Rorug03G0248500
rosa_samantha	Rh3AG297600 Rh3BG208600 Rh3BG333900 Rh3CG330600 Rh3DG331600
rosa_wichuraiana	Rw3G016090 Rw3G026220 Rw3G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 56
AciI	CCGC	3 cut(s)	21, 24, 27
AclWI	GGATC	3 cut(s)	166, 226, 267
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	103, 256
AluBI	AGCT	2 cut(s)	99, 130
AluI	AGCT	2 cut(s)	99, 130
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	166, 226, 267
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	43, 226
AspS9I	GGNCC	3 cut(s)	44, 82, 227
AsuC2I	CCSGG	3 cut(s)	79, 80, 87
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	3 cut(s)	79, 80, 87
BfaI	CTAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	3 cut(s)	79, 80, 87
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	44, 82, 227
BmiI	GGNNCC	5 cut(s)	19, 46, 83, 84, 114
BmrFI	CCNGG	3 cut(s)	79, 80, 87
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuMI	CCSGG	3 cut(s)	79, 80, 87
BsaJI	CCNNGG	2 cut(s)	78, 85
BseDI	CCNNGG	2 cut(s)	78, 85
BseRI	GAGGAG	3 cut(s)	25, 125, 227
BseYI	CCCAGC	1 cut(s)	196
Bsh1236I	CGCG	2 cut(s)	29, 56
BshFI	GGCC	2 cut(s)	45, 228
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	79, 87, 225
BslFI	GGGAC	2 cut(s)	61, 68
BsmFI	GGGAC	2 cut(s)	61, 68
BsnI	GGCC	2 cut(s)	45, 228
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	12, 145, 171, 231, 272
Bsp68I	TCGCGA	1 cut(s)	56
BspACI	CCGC	3 cut(s)	21, 24, 27
BspANI	GGCC	2 cut(s)	45, 228
BspFNI	CGCG	2 cut(s)	29, 56
BspLI	GGNNCC	5 cut(s)	19, 46, 83, 84, 114
BspPI	GGATC	3 cut(s)	166, 226, 267
BssECI	CCNNGG	2 cut(s)	78, 85
BssMI	GATC	5 cut(s)	12, 145, 171, 231, 272
Bst6I	CTCTTC	1 cut(s)	56
BstFNI	CGCG	2 cut(s)	29, 56
BstKTI	GATC	5 cut(s)	15, 148, 174, 234, 275
BstMBI	GATC	5 cut(s)	12, 145, 171, 231, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	77, 78, 85
BstUI	CGCG	2 cut(s)	29, 56
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	45, 228
BtuMI	TCGCGA	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	44, 82, 227
Cfr9I	CCCGGG	1 cut(s)	78
CseI	GACGC	1 cut(s)	18
CviAII	CATG	2 cut(s)	214, 244
CviJI	RGCY	8 cut(s)	18, 45, 99, 115, 130, 191, 200, 228
CviKI_1	RGCY	8 cut(s)	18, 45, 99, 115, 130, 191, 200, 228
DpnI	GATC	5 cut(s)	14, 147, 173, 233, 274
DpnII	GATC	5 cut(s)	12, 145, 171, 231, 272
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	217, 247
FaiI	YATR	5 cut(s)	95, 154, 207, 215, 245
FaqI	GGGAC	2 cut(s)	61, 68
FatI	CATG	2 cut(s)	213, 243
Fnu4HI	GCNGC	2 cut(s)	24, 27
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	45, 228
HapII	CCGG	3 cut(s)	79, 87, 225
HgaI	GACGC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	217, 247
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	3 cut(s)	79, 87, 225
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	3 cut(s)	10, 55, 267
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	217, 247
KflI	GGGWCCC	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	12, 145, 171, 231, 272
LmnI	GCTCC	2 cut(s)	23, 112
LpnPI	CCDG	5 cut(s)	92, 100, 156, 210, 238
MaeI	CTAG	1 cut(s)	122
MalI	GATC	5 cut(s)	14, 147, 173, 233, 274
MboI	GATC	5 cut(s)	12, 145, 171, 231, 272
MboII	GAAGA	2 cut(s)	43, 282
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	277
MnlI	CCTC	8 cut(s)	43, 46, 59, 103, 185, 245, 248, 259
MspI	CCGG	3 cut(s)	79, 87, 225
MspR9I	CCNGG	3 cut(s)	79, 80, 87
MvnI	CGCG	2 cut(s)	29, 56
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	3 cut(s)	79, 80, 87
NdeII	GATC	5 cut(s)	12, 145, 171, 231, 272
NlaIII	CATG	2 cut(s)	217, 247
NlaIV	GGNNCC	5 cut(s)	19, 46, 83, 84, 114
NruI	TCGCGA	1 cut(s)	56
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PflFI	GACNNNGTC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	25, 28
PpuMI	RGGWCCY	1 cut(s)	82
PscI	ACATGT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	5 cut(s)	19, 46, 83, 84, 114
PspPI	GGNCC	3 cut(s)	44, 82, 227
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	166
RruI	TCGCGA	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	132
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	5 cut(s)	12, 145, 171, 231, 272
Sau96I	GGNCC	3 cut(s)	44, 82, 227
ScrFI	CCNGG	3 cut(s)	79, 80, 87
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	101, 132
SinI	GGWCC	1 cut(s)	82
SmaI	CCCGGG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	21, 24, 27
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	77, 78, 85
TaqI	TCGA	2 cut(s)	9, 170
TasI	AATT	1 cut(s)	277
TauI	GCSGC	2 cut(s)	26, 29
TspMI	CCCGGG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	82
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XmaI	CCCGGG	1 cut(s)	78
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.