Rorug03G0248500

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007103
Physical Location & Seq
Reverse (-)
23372987 .. 23373670
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0248500.1

Sequence Viewer

Length: 684 bp
ATGGAACCACTATCCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACAGGCTTTGCAGGCAGACCAGTACCAGGTGGAATCCCACTACAGATCAAATAAGAATCCTCAATGAGCTTTTCTACAACAAAGGAGTTAGGTCTCCAACTGCAGAGCAGATTCAGAGGATCTATCTCCAGCTGAAACGGTACGGAGAGATCGAGAGCAAGAACGTCTATTATTGGTTCGGGAACCACAAGGCTCGGGAGAAACAGAAGAAGAAGTTCACTTCAGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTTCAGCTGGTGTGATGATTGCTTTTAACGGGCAAATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTACCTCTGTTCCCCATGCACGGTGAGAACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTACAGCCACTACTCCGGTGGATGGGGCGGCTACCACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGACTCGACCCTATTTTCCCGCGAAGGTGTTTTCTCTGCGAGAGAAGAGACAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

8.85

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 5.1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AccII CGCG 1 cut(s) 645
AciI CCGC 3 cut(s) 543, 573, 643
AclWI GGATC 4 cut(s) 194, 363, 382, 457
AcuI CTGAAG 2 cut(s) 273, 378
AfaI GTAC 3 cut(s) 91, 209, 337
AfiI CCNNNNNNNGG 3 cut(s) 93, 494, 567
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 5 cut(s) 136, 199, 398, 607, 679
AluI AGCT 5 cut(s) 136, 199, 398, 607, 679
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 165, 665
AlwI GGATC 4 cut(s) 194, 363, 382, 457
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 261
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 609
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 561
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 165, 665
BfmI CTRYAG 3 cut(s) 108, 168, 547
BisI GCNGC 3 cut(s) 51, 544, 574
BlpI GCTNAGC 1 cut(s) 608
BlsI GCNGC 3 cut(s) 52, 545, 575
Bme1390I CCNGG 2 cut(s) 55, 94
BmeT110I CYCGRG 1 cut(s) 261
BmiI GGNNCC 3 cut(s) 6, 251, 337
BmrFI CCNGG 2 cut(s) 55, 94
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 27, 531, 580
BsaWI WCCGGW 1 cut(s) 560
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 494, 567
Bse1I ACTGG 1 cut(s) 87
Bse21I CCTNAGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 27, 531, 580
BseGI GGATG 2 cut(s) 37, 572
BseLI CCNNNNNNNGG 3 cut(s) 93, 494, 567
BseMII CTCAG 2 cut(s) 342, 622
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 645
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 561
BslI CCNNNNNNNGG 3 cut(s) 93, 494, 567
BsmAI GTCTC 2 cut(s) 165, 665
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 306, 609
Bsp143I GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
Bsp1720I GCTNAGC 1 cut(s) 608
BspACI CCGC 3 cut(s) 543, 573, 643
BspCNI CTCAG 2 cut(s) 343, 621
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 6, 251, 337
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 4 cut(s) 194, 363, 382, 457
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 27, 531, 580
BssMI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 207, 497, 584
Bst6I CTCTTC 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 351, 608
BstDSI CCRYGG 1 cut(s) 580
BstF5I GGATG 2 cut(s) 37, 572
BstFNI CGCG 1 cut(s) 645
BstKTI GATC 7 cut(s) 115, 189, 219, 317, 358, 377, 452
BstMAI GTCTC 2 cut(s) 165, 665
BstMBI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
BstMWI GCNNNNNNNGC 3 cut(s) 79, 395, 549
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 3 cut(s) 108, 168, 547
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 3 cut(s) 186, 374, 449
BstYI RGATCY 3 cut(s) 186, 374, 449
Bsu36I CCTNAGG 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 580
BtsCI GGATG 2 cut(s) 37, 572
Cac8I GCNNGC 1 cut(s) 80
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 208, 336
CviAII CATG 5 cut(s) 299, 307, 460, 490, 517
CviQI GTAC 3 cut(s) 90, 208, 336
DdeI CTNAG 2 cut(s) 351, 608
DpnI GATC 7 cut(s) 114, 188, 218, 316, 357, 376, 451
DpnII GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Ecl136II GAGCTC 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 273, 378
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 609
FaeI CATG 5 cut(s) 302, 310, 463, 493, 520
FaiI YATR 9 cut(s) 300, 308, 363, 438, 447, 455, 461, 491, 518
FatI CATG 5 cut(s) 298, 306, 459, 489, 516
FauI CCCGC 1 cut(s) 650
Fnu4HI GCNGC 3 cut(s) 51, 544, 574
FokI GGATG 2 cut(s) 44, 579
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 3 cut(s) 51, 544, 574
GluI GCNGC 3 cut(s) 51, 544, 574
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 54, 561
Hin1II CATG 5 cut(s) 302, 310, 463, 493, 520
HinfI GANTC 4 cut(s) 100, 123, 178, 626
HpaII CCGG 2 cut(s) 54, 561
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 4 cut(s) 183, 292, 374, 532
Hpy188III TCNNGA 3 cut(s) 220, 247, 263
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 3 cut(s) 207, 497, 584
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 5 cut(s) 78, 170, 310, 383, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 395, 549
HpyF3I CTNAG 2 cut(s) 351, 608
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 5 cut(s) 302, 310, 463, 493, 520
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 231
MalI GATC 7 cut(s) 114, 188, 218, 316, 357, 376, 451
MboI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
MboII GAAGA 6 cut(s) 286, 289, 369, 384, 532, 680
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 186, 374, 449
MhlI GDGCHC 2 cut(s) 306, 609
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 9 cut(s) 22, 29, 137, 177, 346, 489, 526, 530, 623
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 366, 417
MspA1I CMGCKG 2 cut(s) 199, 398
MspI CCGG 2 cut(s) 54, 561
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 3 cut(s) 79, 395, 549
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
NlaIII CATG 5 cut(s) 302, 310, 463, 493, 520
NlaIV GGNNCC 3 cut(s) 6, 251, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 545, 575
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 6, 251, 337
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 3 cut(s) 186, 374, 449
PvuII CAGCTG 2 cut(s) 199, 398
RsaI GTAC 3 cut(s) 91, 209, 337
RsaNI GTAC 3 cut(s) 90, 208, 336
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 2 cut(s) 366, 417
SatI GCNGC 3 cut(s) 51, 544, 574
Sau3AI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 449
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 2 cut(s) 306, 609
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 3 cut(s) 108, 168, 547
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 543, 573, 643
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 3 cut(s) 207, 497, 584
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 219, 629
TasI AATT 1 cut(s) 340
TauI GCSGC 2 cut(s) 546, 576
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 2 cut(s) 366, 417
Tru9I TTAA 2 cut(s) 366, 417
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 287, 470, 533
TspGWI ACGGA 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.