MD14G1020900.v1.1

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0007103
Physical Location & Seq
Forward (+)
1961253 .. 1962017
765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1020900.v1.1.491

Sequence Viewer

Length: 765 bp
ATGACGAAGGAATTCGCCGTCCCCCCGGTGGTATTCCCCTCCGGCGGCAACCCTAGCGCCGTCGGATCCAACAACATCCAGCAACGCCGCGTCGCCACGGCGCCGTTTCAGCCCCCGCGCTCCTCGACCTCCTCCATCCCTTTCATGTCCTTCGACGTCGGTTCCGCCGCCGCCTCCTCCTCCTCCTCCCTCTTCGGGGGACCGATCGGATCCTCCACCGTCCCCGGCGGCTCCGCCTCCTTCGAGGACGAGGAGCCCCTCCTGGACGAGCTCGGCATCCACCCTGACCAAATCTGGAGTAAAACCAAGTCCATCCTCAACCCGTTCCGGTCCAACCCGGCGGTCCACAAGGACTCGGACCTCTCCGGGCCGATCCTCCTCTACATGTTACTCTGCCTATTCCAACTCCTCGCCGGAAAAATTCAGTTCGGCGTCATACTCGGGTGGATCGTCGTTTCATCAATTTTCCTCTACATCGTCTTTAACATGCTCGCCGGGCGTAACGGCAATCTCGATCTGCACAGATGTACGTCCGTAGTGGGGTATTGTATGCTGCCGGTGGTAATCTTATCAGCTGCCTCGCTCTTCGTCCCCCAAGGCGGCACCTTCAGGATTGCCGTGGCTGCCGTCTTCGTCTTGTGGGCTACTAGGGTTTGCACAGGGCTCATGGTTGCGCTTGCTGATGGCGGCGACGAGCATCGTGGCTTGATAGCGTATGCTTGTTTCTTGATTTACACTCTGTTTTCGCTTCTTGTGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

255

Amino Acids

27.04

Weight (kDa)

6.4

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 105 - 252 8.2e-10 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 100, 602
AccII CGCG 2 cut(s) 90, 118
AclWI GGATC 6 cut(s) 60, 73, 204, 217, 367, 455
AcsI RAATTY 2 cut(s) 11, 420
AcuI CTGAAG 1 cut(s) 592
AcyI GRCGYC 3 cut(s) 101, 156, 432
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 6 cut(s) 28, 44, 195, 196, 540, 599
AflIII ACRYGT 1 cut(s) 384
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 271, 575
AluI AGCT 2 cut(s) 271, 575
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 6 cut(s) 60, 73, 204, 217, 367, 455
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 553, 575, 623
ApoI RAATTY 2 cut(s) 11, 420
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 4 cut(s) 59, 103, 120, 676
AspS9I GGNCC 5 cut(s) 200, 330, 343, 358, 368
AsuC2I CCSGG 5 cut(s) 26, 225, 338, 367, 496
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 4 cut(s) 200, 330, 343, 358
BamHI GGATCC 2 cut(s) 65, 209
BanI GGYRCC 2 cut(s) 100, 602
BanII GRGCYC 3 cut(s) 258, 273, 666
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 540, 562, 610
BccI CCATC 3 cut(s) 143, 320, 677
BceAI ACGGC 7 cut(s) 2, 44, 88, 114, 520, 602, 611
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 5 cut(s) 26, 225, 338, 367, 496
BfaI CTAG 2 cut(s) 54, 648
BfoI RGCGCY 2 cut(s) 60, 104
Bme1390I CCNGG 6 cut(s) 26, 225, 263, 338, 367, 496
Bme18I GGWCC 4 cut(s) 200, 330, 343, 358
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 5 cut(s) 200, 330, 343, 358, 368
BmiI GGNNCC 8 cut(s) 67, 102, 163, 201, 211, 232, 255, 604
BmrFI CCNGG 6 cut(s) 26, 225, 263, 338, 367, 496
BmsI GCATC 2 cut(s) 285, 706
BpiI GAAGAC 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 316
BpuMI CCSGG 5 cut(s) 26, 225, 338, 367, 496
BsaHI GRCGYC 3 cut(s) 101, 156, 432
BsaJI CCNNGG 5 cut(s) 24, 96, 223, 595, 618
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 44, 195, 196, 540, 599
Bse118I RCCGGY 1 cut(s) 556
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 5 cut(s) 24, 96, 223, 595, 618
BseGI GGATG 4 cut(s) 75, 135, 276, 312
BseLI CCNNNNNNNGG 6 cut(s) 28, 44, 195, 196, 540, 599
BseRI GAGGAG 9 cut(s) 112, 121, 166, 169, 172, 175, 266, 368, 398
BseXI GCAGC 3 cut(s) 540, 562, 610
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 2 cut(s) 90, 118
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 2 cut(s) 100, 602
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 9 cut(s) 26, 42, 225, 328, 338, 366, 414, 495, 557
BslFI GGGAC 4 cut(s) 5, 206, 213, 575
BslI CCNNNNNNNGG 6 cut(s) 28, 44, 195, 196, 540, 599
BsmFI GGGAC 4 cut(s) 5, 206, 213, 575
BsnI GGCC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 258, 273, 666
Bsp143I GATC 6 cut(s) 65, 204, 209, 372, 447, 514
BspANI GGCC 1 cut(s) 370
BspFNI CGCG 2 cut(s) 90, 118
BspLI GGNNCC 8 cut(s) 67, 102, 163, 201, 211, 232, 255, 604
BspPI GGATC 6 cut(s) 60, 73, 204, 217, 367, 455
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 2 cut(s) 100, 602
BsrFI RCCGGY 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 5 cut(s) 24, 96, 223, 595, 618
BssMI GATC 6 cut(s) 65, 204, 209, 372, 447, 514
BssNI GRCGYC 3 cut(s) 101, 156, 432
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 197, 590
BstACI GRCGYC 3 cut(s) 101, 156, 432
BstC8I GCNNGC 2 cut(s) 492, 678
BstDSI CCRYGG 2 cut(s) 96, 618
BstF5I GGATG 4 cut(s) 75, 135, 276, 312
BstFNI CGCG 2 cut(s) 90, 118
BstH2I RGCGCY 2 cut(s) 60, 104
BstHHI GCGC 4 cut(s) 59, 103, 120, 676
BstKTI GATC 6 cut(s) 68, 207, 212, 375, 450, 517
BstMBI GATC 6 cut(s) 65, 204, 209, 372, 447, 514
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 54, 109, 496, 623
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 388, 490
BstSCI CCNGG 6 cut(s) 24, 223, 261, 336, 365, 494
BstUI CGCG 2 cut(s) 90, 118
BstV1I GCAGC 3 cut(s) 540, 562, 610
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 2 cut(s) 65, 209
BstYI RGATCY 2 cut(s) 65, 209
BsuRI GGCC 1 cut(s) 370
BtgI CCRYGG 2 cut(s) 96, 618
BtsCI GGATG 4 cut(s) 75, 135, 276, 312
Cac8I GCNNGC 2 cut(s) 492, 678
CfoI GCGC 4 cut(s) 59, 103, 120, 676
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 5 cut(s) 200, 330, 343, 358, 368
CseI GACGC 2 cut(s) 79, 421
Csp6I GTAC 1 cut(s) 528
CviAII CATG 4 cut(s) 145, 385, 487, 667
CviQI GTAC 1 cut(s) 528
DinI GGCGCC 1 cut(s) 102
DpnI GATC 6 cut(s) 67, 206, 211, 374, 449, 516
DpnII GATC 6 cut(s) 65, 204, 209, 372, 447, 514
Eam1104I CTCTTC 2 cut(s) 197, 590
EarI CTCTTC 2 cut(s) 197, 590
EciI GGCGGA 2 cut(s) 154, 223
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 3 cut(s) 258, 273, 666
Eco47I GGWCC 4 cut(s) 200, 330, 343, 358
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 3 cut(s) 258, 273, 666
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 4 cut(s) 148, 388, 490, 670
FaiI YATR 7 cut(s) 146, 386, 437, 488, 551, 668, 717
FaqI GGGAC 4 cut(s) 5, 206, 213, 575
FatI CATG 4 cut(s) 144, 384, 486, 666
FauI CCCGC 1 cut(s) 123
FokI GGATG 4 cut(s) 62, 122, 263, 299
FriOI GRGCYC 3 cut(s) 258, 273, 666
FspBI CTAG 2 cut(s) 54, 648
GlaI GCGC 4 cut(s) 58, 102, 119, 675
GsuI CTGGAG 1 cut(s) 316
HaeII RGCGCY 2 cut(s) 60, 104
HaeIII GGCC 1 cut(s) 370
HapII CCGG 9 cut(s) 26, 42, 225, 328, 338, 366, 414, 495, 557
HgaI GACGC 2 cut(s) 79, 421
HhaI GCGC 4 cut(s) 59, 103, 120, 676
Hin1I GRCGYC 3 cut(s) 101, 156, 432
Hin1II CATG 4 cut(s) 148, 388, 490, 670
Hin6I GCGC 4 cut(s) 57, 101, 118, 674
HinP1I GCGC 4 cut(s) 57, 101, 118, 674
HinfI GANTC 1 cut(s) 353
HpaII CCGG 9 cut(s) 26, 42, 225, 328, 338, 366, 414, 495, 557
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 65, 209, 358
Hpy188III TCNNGA 4 cut(s) 295, 512, 610, 727
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 6 cut(s) 65, 95, 158, 161, 455, 695
HpyAV CCTTC 3 cut(s) 160, 250, 616
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 156, 530
HpyCH4V TGCA 2 cut(s) 520, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 109, 496, 623
HpySE526I ACGT 2 cut(s) 156, 530
Hsp92I GRCGYC 3 cut(s) 101, 156, 432
Hsp92II CATG 4 cut(s) 148, 388, 490, 670
HspAI GCGC 4 cut(s) 57, 101, 118, 674
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 6 cut(s) 65, 204, 209, 372, 447, 514
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 3 cut(s) 125, 236, 253
Lsp1109I GCAGC 3 cut(s) 540, 562, 610
LweI GCATC 2 cut(s) 285, 706
MaeI CTAG 2 cut(s) 54, 648
MaeII ACGT 2 cut(s) 156, 530
MaeIII GTNAC 2 cut(s) 387, 500
MalI GATC 6 cut(s) 67, 206, 211, 374, 449, 516
MboI GATC 6 cut(s) 65, 204, 209, 372, 447, 514
MboII GAAGA 3 cut(s) 184, 577, 622
MflI RGATCY 2 cut(s) 65, 209
MhlI GDGCHC 3 cut(s) 258, 273, 666
MluCI AATT 3 cut(s) 11, 420, 462
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 4 cut(s) 43, 93, 357, 427
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 9 cut(s) 26, 42, 225, 328, 338, 366, 414, 495, 557
MspR9I CCNGG 6 cut(s) 26, 225, 263, 338, 367, 496
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 2 cut(s) 90, 118
MwoI GCNNNNNNNGC 4 cut(s) 54, 109, 496, 623
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 5 cut(s) 26, 225, 338, 367, 496
NdeII GATC 6 cut(s) 65, 204, 209, 372, 447, 514
NlaIII CATG 4 cut(s) 148, 388, 490, 670
NlaIV GGNNCC 8 cut(s) 67, 102, 163, 201, 211, 232, 255, 604
NmeAIII GCCGAG 1 cut(s) 252
NspI RCATGY 2 cut(s) 388, 490
PciI ACATGT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 510
PdmI GAANNNNTTC 1 cut(s) 11
PfoI TCCNGGA 1 cut(s) 261
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 347
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 8 cut(s) 67, 102, 163, 201, 211, 232, 255, 604
PspPI GGNCC 5 cut(s) 200, 330, 343, 358, 368
PsuI RGATCY 2 cut(s) 65, 209
PvuI CGATCG 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 1 cut(s) 483
Sau3AI GATC 6 cut(s) 65, 204, 209, 372, 447, 514
Sau96I GGNCC 5 cut(s) 200, 330, 343, 358, 368
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 6 cut(s) 26, 225, 263, 338, 367, 496
SduI GDGCHC 3 cut(s) 258, 273, 666
SetI ASST 7 cut(s) 131, 159, 273, 363, 533, 577, 608
SfaNI GCATC 2 cut(s) 285, 706
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 4 cut(s) 200, 330, 343, 358
Sse9I AATT 3 cut(s) 11, 420, 462
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 2 cut(s) 54, 648
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 6 cut(s) 24, 223, 261, 336, 365, 494
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 159, 533
TaqI TCGA 4 cut(s) 125, 153, 243, 513
TaqII GACCGA 1 cut(s) 217
TasI AATT 3 cut(s) 11, 420, 462
TauI GCSGC 7 cut(s) 48, 90, 170, 173, 231, 603, 690
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseI GCWGC 3 cut(s) 553, 575, 623
TspDTI ATGAA 2 cut(s) 133, 447
TspGWI ACGGA 1 cut(s) 523
VpaK11BI GGWCC 4 cut(s) 200, 330, 343, 358
XapI RAATTY 2 cut(s) 11, 420
XceI RCATGY 2 cut(s) 388, 490
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 2 cut(s) 54, 648
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.