Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010986.1

Orthogroup ID

OG0007103

Physical Location & Seq

Genomic Coordinates Reverse (-)

40594 .. 41184

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010986.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

tcgtcgtccggccccctattcggcggccccatcggctccggcggttcggttcccggtggcacaagcttcgaggacgaggagccactcctcgacgagctcggcatccatccagatcaaatatggagaaagaccaagtcgatcctcaatcccttccgggccaacccggccgtccacaaggactcggacctttccggcccgatcctcctctacatgtccctctgcctctttcaattgctcgccgggaagatccaattcggcgtgattctcggctggatcgtcgtctcctccatcttcctctacgtcgtcttcaacatgttggccggccggaatgggaacctcgacctgcacaggtgtacgagcgtcgtcggctactgtttgttaccggtggtgattttatcggctgcctcgctgttcgtgccgcaaggcgggactttcaggttcgcggtggccggggtctttgttttgtgggccactagggtttgtacggcccttatggttgctcttgctgatggaggtgacgagcatcgtgggctgatagcgtatgcgtgcttcttgatttacactctgttttcgcttctcgttatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

196

Amino Acids

21.03

Weight (kDa)

6.02

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36300 AT3G52760
fragaria_vesca	FvH4_6g27040
malus_domestica	MD12G1023700.v1.1 MD14G1020900.v1.1
prunus_persica	Prupe.7G112800_v2.0.a1
pyrus_communis	pycom12g02210
rosa_chinensis	RchiOBHm_Chr3g0472991 RchiOBHm_Chr3g0491231
rosa_laevigata	RLG00000022852 RLG00000024039
rosa_multiflora	Rmu_co8300385.1_g000001 Rmu_sc0010986.1_g000006 Rmu_sc0014162.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393080
rosa_rugosa	Rorug03G0130500 Rorug03G0248500
rosa_samantha	Rh3AG297600 Rh3BG208600 Rh3BG333900 Rh3CG330600 Rh3DG331600
rosa_wichuraiana	Rw3G016090 Rw3G026220 Rw3G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AccII	CGCG	1 cut(s)	443
AciI	CCGC	5 cut(s)	24, 42, 419, 426, 443
AclWI	GGATC	4 cut(s)	133, 193, 241, 281
AcoI	YGGCCR	4 cut(s)	165, 318, 322, 447
AfaI	GTAC	2 cut(s)	355, 484
AfiI	CCNNNNNNNGG	2 cut(s)	20, 425
AflIII	ACRYGT	2 cut(s)	210, 312
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	230, 310
AluBI	AGCT	2 cut(s)	66, 97
AluI	AGCT	2 cut(s)	66, 97
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	4 cut(s)	133, 193, 241, 281
ApeKI	GCWGC	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	382
AspS9I	GGNCC	7 cut(s)	11, 26, 156, 184, 194, 468, 487
AsuC2I	CCSGG	5 cut(s)	54, 155, 164, 241, 451
AsuHPI	GGTGA	2 cut(s)	400, 527
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	4 cut(s)	38, 114, 296, 503
BceAI	ACGGC	2 cut(s)	152, 501
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	5 cut(s)	54, 155, 164, 241, 451
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	351
BglI	GCCNNNNNGGC	2 cut(s)	33, 164
BisI	GCNGC	3 cut(s)	25, 402, 419
BlsI	GCNGC	3 cut(s)	26, 403, 420
Bme1390I	CCNGG	5 cut(s)	54, 155, 164, 241, 451
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	7 cut(s)	11, 26, 156, 184, 194, 468, 487
BmiI	GGNNCC	6 cut(s)	13, 28, 37, 51, 81, 335
BmrFI	CCNGG	5 cut(s)	54, 155, 164, 241, 451
BmsI	GCATC	2 cut(s)	111, 532
BpiI	GAAGAC	1 cut(s)	298
BpuMI	CCSGG	5 cut(s)	54, 155, 164, 241, 451
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 425
Bse118I	RCCGGY	2 cut(s)	320, 382
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	102, 106
BseLI	CCNNNNNNNGG	2 cut(s)	20, 425
BseRI	GAGGAG	4 cut(s)	77, 92, 194, 274
BseX3I	CGGCCG	2 cut(s)	165, 322
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	2 cut(s)	168, 325
BshTI	ACCGGT	1 cut(s)	382
BsiEI	CGRYCG	2 cut(s)	168, 325
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	199, 442
BslI	CCNNNNNNNGG	2 cut(s)	20, 425
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	199, 442
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	112, 138, 198, 246, 273
BspACI	CCGC	5 cut(s)	24, 42, 419, 426, 443
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	6 cut(s)	13, 28, 37, 51, 81, 335
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	4 cut(s)	133, 193, 241, 281
BsrFI	RCCGGY	2 cut(s)	320, 382
BssAI	RCCGGY	2 cut(s)	320, 382
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	5 cut(s)	112, 138, 198, 246, 273
Bst4CI	ACNGT	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	237, 322, 547
BstF5I	GGATG	2 cut(s)	102, 106
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	5 cut(s)	115, 141, 201, 249, 276
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	5 cut(s)	112, 138, 198, 246, 273
BstMCI	CGRYCG	2 cut(s)	168, 325
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 164, 366, 415, 529
BstNSI	RCATGY	2 cut(s)	214, 316
BstSCI	CCNGG	5 cut(s)	52, 153, 162, 239, 449
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BstZI	CGGCCG	2 cut(s)	165, 322
BtsCI	GGATG	2 cut(s)	102, 106
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	237, 322, 547
Cfr10I	RCCGGY	2 cut(s)	320, 382
Cfr13I	GGNCC	7 cut(s)	11, 26, 156, 184, 194, 468, 487
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	354, 483
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	2 cut(s)	211, 313
CviQI	GTAC	2 cut(s)	354, 483
DpnI	GATC	5 cut(s)	114, 140, 200, 248, 275
DpnII	GATC	5 cut(s)	112, 138, 198, 246, 273
EaeI	YGGCCR	4 cut(s)	165, 318, 322, 447
EagI	CGGCCG	2 cut(s)	165, 322
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	2 cut(s)	165, 322
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	184
Eco52I	CGGCCG	2 cut(s)	165, 322
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	214, 316
FaiI	YATR	6 cut(s)	121, 212, 314, 494, 543, 584
FaqI	GGGAC	2 cut(s)	199, 442
FatI	CATG	2 cut(s)	210, 312
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	3 cut(s)	25, 402, 419
FokI	GGATG	2 cut(s)	89, 93
FriOI	GRGCYC	1 cut(s)	99
FseI	GGCCGGCC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	25, 402, 419
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	3 cut(s)	25, 402, 419
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	214, 316
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	2 cut(s)	179, 262
HphI	GGTGA	2 cut(s)	400, 527
Hpy166II	GTNNAC	2 cut(s)	172, 354
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	110, 553
Hpy8I	GTNNAC	2 cut(s)	172, 354
Hpy99I	CGWCG	6 cut(s)	7, 95, 281, 305, 365, 368
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 164, 366, 415, 529
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	214, 316
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	112, 138, 198, 246, 273
LmnI	GCTCC	2 cut(s)	41, 79
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	111, 532
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	378, 515
MalI	GATC	5 cut(s)	114, 140, 200, 248, 275
MboI	GATC	5 cut(s)	112, 138, 198, 246, 273
MboII	GAAGA	3 cut(s)	256, 283, 298
MfeI	CAATTG	1 cut(s)	230
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	230, 251
MlyI	GAGTC	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	320
MspR9I	CCNGG	5 cut(s)	54, 155, 164, 241, 451
MunI	CAATTG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	5 cut(s)	33, 164, 366, 415, 529
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	5 cut(s)	54, 155, 164, 241, 451
NdeII	GATC	5 cut(s)	112, 138, 198, 246, 273
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	214, 316
NlaIV	GGNNCC	6 cut(s)	13, 28, 37, 51, 81, 335
NmeAIII	GCCGAG	2 cut(s)	78, 246
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	2 cut(s)	214, 316
PciI	ACATGT	2 cut(s)	210, 312
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	26, 403, 420
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	2 cut(s)	210, 312
Psp124BI	GAGCTC	1 cut(s)	99
PspN4I	GGNNCC	6 cut(s)	13, 28, 37, 51, 81, 335
PspPI	GGNCC	7 cut(s)	11, 26, 156, 184, 194, 468, 487
PsuI	RGATCY	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	133
RigI	GGCCGGCC	1 cut(s)	324
RsaI	GTAC	2 cut(s)	355, 484
RsaNI	GTAC	2 cut(s)	354, 483
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	3 cut(s)	25, 402, 419
Sau3AI	GATC	5 cut(s)	112, 138, 198, 246, 273
Sau96I	GGNCC	7 cut(s)	11, 26, 156, 184, 194, 468, 487
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	5 cut(s)	54, 155, 164, 241, 451
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	9 cut(s)	68, 99, 189, 303, 339, 345, 353, 440, 517
SfaNI	GCATC	2 cut(s)	111, 532
SfiI	GGCCNNNNNGGCC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	2 cut(s)	230, 251
SsiI	CCGC	5 cut(s)	24, 42, 419, 426, 443
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	5 cut(s)	52, 153, 162, 239, 449
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	69, 90, 137, 339
TasI	AATT	2 cut(s)	230, 251
TauI	GCSGC	2 cut(s)	27, 421
TfiI	GAWTC	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	184
XceI	RCATGY	2 cut(s)	214, 316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.