Rmu_sc0014162.1_g000006

Protein YIPF5 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014162.1
Physical Location & Seq
Forward (+)
57014 .. 59597
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014162.1_g000006.1.cds

Sequence Viewer

Length: 1185 bp
atgggaggtgcagccaagttatcactacagattgatcagatggtggaattaattcaaaataggagcatcgtgactttagtagtgaataaaggtgtgttggggacttctattgctgaagtgatgaaattagtttcatctttacctggggtagagccagataactatggcttgactggttcaaagaacatatgtgctgctgagatagtgggaatgttcgtgcacatgttaggacatggtgttgggaataggttagcccaagaacgattccaacgttctggagagactgtgagtagatactttaggattgtcctagacagtgtatgtcgaatggctattgatgttataaagccgccggatcctgagttcaatgaaattcctgaggaaatatcaagagatacaagatatatgcctcattttaaggaggcgaagcagttcgccatccccccggtggttttcccctccggcggaaaccccagcgccggatccaacatccagcaacgccgcgtcccaacggcgccgtttcaaccaccccgatcctccgcctccagcatccccttcatgtccttcgacataggctcagccgccgccgcttccacctccggcagcttttacggcggtcccatcggctccggctcctccgccctccccggaggcaccggcttcgaagacgaggagcctcttctcgacgagctcggtattcaccccgatcaaatctggcggaagaccaagtccattctccaccccttccgggtcaacccggacctccacaaggagtccgacatgtccggccccttcctcctctacgtctccctctgcctctttcagttactcgccggcaagatccaattcggcgtaatactcggctggatcatcgtctccttcttcttcctgtacgtcgtcgtcaacatgttggcgggccgtaacggcaacctagagctgcacaggtgcgccagcgtcgttggctactctctgttgccggtggtgattttatcggccaccatgctctttgtgcctcaaggcgggagtttcgtgttcgcagtggctgccgtgtttgttttatgggccacaagggtttgcaccggcctcatggttgcgctcgtcgacggcggtgatgagcatcgcggcctcattgcgtatgcttgtttcttgatttacactctcttttcatttctggttatattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

42.68

Weight (kDa)

6.25

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 514, 653
AccI GTMKAC 1 cut(s) 1101
AccII CGCG 2 cut(s) 504, 1122
AclI AACGTT 1 cut(s) 271
AclWI GGATC 7 cut(s) 350, 363, 477, 490, 528, 835, 875
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 515
AfaI GTAC 1 cut(s) 893
AfiI CCNNNNNNNGG 6 cut(s) 448, 464, 479, 748, 769, 1019
AflIII ACRYGT 3 cut(s) 222, 780, 906
AgsI TTSAA 4 cut(s) 56, 180, 367, 524
AjnI CCWGG 1 cut(s) 142
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 3 cut(s) 606, 691, 937
AluI AGCT 3 cut(s) 606, 691, 937
Alw21I GWGCWC 2 cut(s) 222, 693
Alw26I GTCTC 3 cut(s) 275, 811, 880
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 7 cut(s) 350, 363, 477, 490, 528, 835, 875
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 6 cut(s) 787, 916, 993, 1062, 1081, 1123
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 5 cut(s) 11, 194, 603, 937, 1043
ApoI RAATTY 1 cut(s) 372
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 2 cut(s) 51, 431
AspLEI GCGC 4 cut(s) 479, 517, 950, 1096
AspS9I GGNCC 5 cut(s) 617, 760, 788, 916, 1062
AsuC2I CCSGG 4 cut(s) 446, 648, 749, 758
AsuHPI GGTGA 3 cut(s) 692, 994, 1121
AsuII TTCGAA 1 cut(s) 663
AvaII GGWCC 2 cut(s) 617, 760
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 222
BamHI GGATCC 2 cut(s) 355, 482
BanI GGYRCC 2 cut(s) 514, 653
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 2 cut(s) 672, 728
Bbv12I GWGCWC 2 cut(s) 222, 693
BbvI GCAGC 5 cut(s) 23, 181, 615, 924, 1030
BccI CCATC 3 cut(s) 34, 446, 629
BceAI ACGGC 7 cut(s) 502, 528, 628, 903, 940, 1031, 1120
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 4 cut(s) 446, 648, 749, 758
BcoDI GTCTC 3 cut(s) 275, 811, 880
BfaI CTAG 2 cut(s) 311, 932
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 2 cut(s) 480, 518
BglI GCCNNNNNGGC 1 cut(s) 924
BlpI GCTNAGC 1 cut(s) 577
Bme1390I CCNGG 5 cut(s) 144, 446, 648, 749, 758
Bme18I GGWCC 2 cut(s) 617, 760
BmgT120I GGNCC 5 cut(s) 617, 760, 788, 916, 1062
BmiI GGNNCC 9 cut(s) 357, 484, 516, 619, 628, 634, 655, 675, 790
BmrFI CCNGG 5 cut(s) 144, 446, 648, 749, 758
BmsI GCATC 3 cut(s) 75, 558, 1126
BpiI GAAGAC 2 cut(s) 672, 728
BpmI CTGGAG 2 cut(s) 297, 529
Bpu1102I GCTNAGC 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 999
BpuMI CCSGG 4 cut(s) 446, 648, 749, 758
BsaBI GATNNNNATC 1 cut(s) 1116
BsaHI GRCGYC 1 cut(s) 515
BsaJI CCNNGG 3 cut(s) 143, 444, 646
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 6 cut(s) 448, 464, 479, 748, 769, 1019
Bse118I RCCGGY 4 cut(s) 656, 833, 976, 1079
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 1128
Bse8I GATNNNNATC 1 cut(s) 1116
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 143, 444, 646
BseGI GGATG 3 cut(s) 438, 489, 549
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 6 cut(s) 448, 464, 479, 748, 769, 1019
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 4 cut(s) 189, 351, 369, 591
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 3 cut(s) 625, 686, 788
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 5 cut(s) 23, 181, 615, 924, 1030
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 2 cut(s) 30, 923
Bsh1236I CGCG 2 cut(s) 504, 1122
BshFI GGCC 6 cut(s) 789, 918, 995, 1064, 1083, 1125
BshNI GGYRCC 2 cut(s) 514, 653
BsiHKAI GWGCWC 2 cut(s) 222, 693
BslFI GGGAC 3 cut(s) 115, 491, 603
BslI CCNNNNNNNGG 6 cut(s) 448, 464, 479, 748, 769, 1019
BsmAI GTCTC 3 cut(s) 275, 811, 880
BsmBI CGTCTC 2 cut(s) 811, 880
BsmFI GGGAC 3 cut(s) 115, 491, 603
BsnI GGCC 6 cut(s) 789, 918, 995, 1064, 1083, 1125
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 222, 693
Bsp143I GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
Bsp1720I GCTNAGC 1 cut(s) 577
BspANI GGCC 6 cut(s) 789, 918, 995, 1064, 1083, 1125
BspCNI CTCAG 4 cut(s) 190, 352, 370, 590
BspFNI CGCG 2 cut(s) 504, 1122
BspLI GGNNCC 9 cut(s) 357, 484, 516, 619, 628, 634, 655, 675, 790
BspPI GGATC 7 cut(s) 350, 363, 477, 490, 528, 835, 875
BspT104I TTCGAA 1 cut(s) 663
BspT107I GGYRCC 2 cut(s) 514, 653
BsrDI GCAATG 1 cut(s) 1128
BsrFI RCCGGY 4 cut(s) 656, 833, 976, 1079
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 4 cut(s) 656, 833, 976, 1079
BssECI CCNNGG 3 cut(s) 143, 444, 646
BssMI GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
BssNI GRCGYC 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 286, 317
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 835, 916, 952
BstDEI CTNAG 4 cut(s) 198, 360, 378, 577
BstENI CCTNNNNNAGG 1 cut(s) 767
BstF5I GGATG 3 cut(s) 438, 489, 549
BstFNI CGCG 2 cut(s) 504, 1122
BstH2I RGCGCY 2 cut(s) 480, 518
BstHHI GCGC 4 cut(s) 479, 517, 950, 1096
BstKTI GATC 7 cut(s) 37, 358, 485, 536, 709, 843, 870
BstMAI GTCTC 3 cut(s) 275, 811, 880
BstMBI GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
BstMWI GCNNNNNNNGC 6 cut(s) 587, 612, 924, 960, 1009, 1043
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 3 cut(s) 226, 784, 910
BstSCI CCNGG 5 cut(s) 142, 444, 646, 747, 756
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 2 cut(s) 504, 1122
BstV1I GCAGC 5 cut(s) 23, 181, 615, 924, 1030
BstV2I GAAGAC 2 cut(s) 672, 728
BstX2I RGATCY 3 cut(s) 355, 482, 840
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 3 cut(s) 355, 482, 840
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 6 cut(s) 789, 918, 995, 1064, 1083, 1125
BtgZI GCGATG 1 cut(s) 1103
BtsCI GGATG 3 cut(s) 438, 489, 549
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 322, 1044
Cac8I GCNNGC 3 cut(s) 835, 916, 952
CaiI CAGNNNCTG 1 cut(s) 1043
CfoI GCGC 4 cut(s) 479, 517, 950, 1096
Cfr10I RCCGGY 4 cut(s) 656, 833, 976, 1079
Cfr13I GGNCC 5 cut(s) 617, 760, 788, 916, 1062
CseI GACGC 2 cut(s) 493, 943
Csp6I GTAC 1 cut(s) 892
CviAII CATG 7 cut(s) 223, 233, 559, 781, 907, 1000, 1087
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 4 cut(s) 198, 360, 378, 577
DinI GGCGCC 1 cut(s) 516
DpnI GATC 7 cut(s) 36, 357, 484, 535, 708, 842, 869
DpnII GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
EaeI YGGCCR 1 cut(s) 993
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
EciI GGCGGA 4 cut(s) 480, 529, 628, 733
Ecl136II GAGCTC 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 617, 760
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 693
EgeI GGCGCC 1 cut(s) 516
EheI GGCGCC 1 cut(s) 516
Esp3I CGTCTC 2 cut(s) 811, 880
FaeI CATG 7 cut(s) 226, 236, 562, 784, 910, 1003, 1090
FaqI GGGAC 3 cut(s) 115, 491, 603
FatI CATG 7 cut(s) 222, 232, 558, 780, 906, 999, 1086
FauI CCCGC 2 cut(s) 907, 1013
FauNDI CATATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 1101
FokI GGATG 3 cut(s) 425, 476, 536
FriOI GRGCYC 1 cut(s) 693
FspBI CTAG 2 cut(s) 311, 932
GlaI GCGC 4 cut(s) 478, 516, 949, 1095
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 2 cut(s) 297, 529
HaeII RGCGCY 2 cut(s) 480, 518
HaeIII GGCC 6 cut(s) 789, 918, 995, 1064, 1083, 1125
HgaI GACGC 2 cut(s) 493, 943
HhaI GCGC 4 cut(s) 479, 517, 950, 1096
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 7 cut(s) 226, 236, 562, 784, 910, 1003, 1090
Hin6I GCGC 4 cut(s) 477, 515, 948, 1094
HinP1I GCGC 4 cut(s) 477, 515, 948, 1094
HincII GTYRAC 3 cut(s) 754, 904, 1102
HindII GTYRAC 3 cut(s) 754, 904, 1102
HinfI GANTC 2 cut(s) 264, 773
HphI GGTGA 3 cut(s) 692, 994, 1121
Hpy166II GTNNAC 4 cut(s) 220, 754, 904, 1102
Hpy188I TCNGA 2 cut(s) 39, 778
Hpy188III TCNNGA 7 cut(s) 70, 276, 359, 377, 390, 683, 1147
Hpy8I GTNNAC 4 cut(s) 220, 754, 904, 1102
Hpy99I CGWCG 6 cut(s) 689, 899, 902, 959, 1103, 1106
HpyAV CCTTC 5 cut(s) 565, 574, 754, 802, 889
HpyCH4III ACNGT 2 cut(s) 286, 317
HpyCH4IV ACGT 3 cut(s) 271, 804, 894
HpyCH4V TGCA 4 cut(s) 11, 220, 940, 1077
HpyF10VI GCNNNNNNNGC 6 cut(s) 587, 612, 924, 960, 1009, 1043
HpyF3I CTNAG 4 cut(s) 198, 360, 378, 577
HpySE526I ACGT 3 cut(s) 271, 804, 894
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 7 cut(s) 226, 236, 562, 784, 910, 1003, 1090
HspAI GCGC 4 cut(s) 477, 515, 948, 1094
KasI GGCGCC 1 cut(s) 514
KroI GCCGGC 1 cut(s) 833
KroNI GCCGGC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
LmnI GCTCC 4 cut(s) 63, 632, 638, 673
Lsp1109I GCAGC 5 cut(s) 23, 181, 615, 924, 1030
LweI GCATC 3 cut(s) 75, 558, 1126
MaeI CTAG 2 cut(s) 311, 932
MaeII ACGT 3 cut(s) 271, 804, 894
MaeIII GTNAC 3 cut(s) 70, 825, 920
MalI GATC 7 cut(s) 36, 357, 484, 535, 708, 842, 869
MboI GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
MboII GAAGA 5 cut(s) 671, 677, 733, 874, 877
MflI RGATCY 3 cut(s) 355, 482, 840
MhlI GDGCHC 2 cut(s) 222, 693
MluCI AATT 5 cut(s) 47, 51, 125, 372, 845
Mly113I GGCGCC 1 cut(s) 515
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 3 cut(s) 292, 510, 801
MroNI GCCGGC 1 cut(s) 833
MroXI GAANNNNTTC 2 cut(s) 51, 431
MseI TTAA 2 cut(s) 50, 417
MspR9I CCNGG 5 cut(s) 144, 446, 648, 749, 758
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 2 cut(s) 504, 1122
MwoI GCNNNNNNNGC 6 cut(s) 587, 612, 924, 960, 1009, 1043
NaeI GCCGGC 1 cut(s) 835
NarI GGCGCC 1 cut(s) 515
NciI CCSGG 4 cut(s) 446, 648, 749, 758
NdeI CATATG 1 cut(s) 188
NdeII GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
NgoMIV GCCGGC 1 cut(s) 833
NlaIII CATG 7 cut(s) 226, 236, 562, 784, 910, 1003, 1090
NlaIV GGNNCC 9 cut(s) 357, 484, 516, 619, 628, 634, 655, 675, 790
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 3 cut(s) 226, 784, 910
NspV TTCGAA 1 cut(s) 663
PciI ACATGT 3 cut(s) 222, 780, 906
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PdiI GCCGGC 1 cut(s) 835
PdmI GAANNNNTTC 2 cut(s) 51, 431
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 727
PleI GAGTC 1 cut(s) 781
PluTI GGCGCC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 781
PscI ACATGT 3 cut(s) 222, 780, 906
PshBI ATTAAT 1 cut(s) 50
PsiI TTATAA 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 693
Psp1406I AACGTT 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 9 cut(s) 357, 484, 516, 619, 628, 634, 655, 675, 790
PspPI GGNCC 5 cut(s) 617, 760, 788, 916, 1062
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 3 cut(s) 355, 482, 840
PsyI GACNNNGTC 1 cut(s) 727
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
SacI GAGCTC 1 cut(s) 693
SalI GTCGAC 1 cut(s) 1100
SaqAI TTAA 2 cut(s) 50, 417
Sau3AI GATC 7 cut(s) 34, 355, 482, 533, 706, 840, 867
Sau96I GGNCC 5 cut(s) 617, 760, 788, 916, 1062
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 5 cut(s) 144, 446, 648, 749, 758
SduI GDGCHC 2 cut(s) 222, 693
SfaNI GCATC 3 cut(s) 75, 558, 1126
SfcI CTRYAG 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 663
SgrDI CGTCGACG 1 cut(s) 1100
SinI GGWCC 2 cut(s) 617, 760
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
Sse9I AATT 5 cut(s) 47, 51, 125, 372, 845
SspDI GGCGCC 1 cut(s) 514
SspMI CTAG 2 cut(s) 311, 932
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 5 cut(s) 142, 444, 646, 747, 756
TaaI ACNGT 2 cut(s) 286, 317
TaiI ACGT 3 cut(s) 274, 807, 897
TaqI TCGA 5 cut(s) 325, 567, 663, 684, 1101
TasI AATT 5 cut(s) 47, 51, 125, 372, 845
TauI GCSGC 6 cut(s) 352, 504, 584, 587, 590, 1125
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 50, 417
Tru9I TTAA 2 cut(s) 50, 417
TscAI CASTG 2 cut(s) 322, 1044
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 5 cut(s) 11, 194, 603, 937, 1043
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 123, 137, 384, 547, 1155
TspRI CASTG 2 cut(s) 322, 1044
Tth111I GACNNNGTC 1 cut(s) 727
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 617, 760
VspI ATTAAT 1 cut(s) 50
XagI CCTNNNNNAGG 1 cut(s) 767
XapI RAATTY 1 cut(s) 372
XceI RCATGY 3 cut(s) 226, 784, 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 1101
XmnI GAANNNNTTC 2 cut(s) 51, 431
XspI CTAG 2 cut(s) 311, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.