Prupe.7G112800_v2.0.a1

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0007103
Physical Location & Seq
Reverse (-)
13886719 .. 13888951
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G112800.1

Sequence Viewer

Length: 765 bp
ATGACGAAGGAGTTCGCGGTACCTCCAGTGGTGTTCCCCTCCGGCGGGAACCCTAGCGCCGTCGGATCCAACAACATCCAGCAACGCCGCGTCGCGACGGCGCCGTTTCAACCACCGCGCTCCTCCTCCTCCTCGATCCCCTTCATGTCCTTCGACATCGGCTCGGCTGCCGCCGCCTCCTCCTCCTCCCTCTTCGGTGGCCCGATCGGCTCCTCCTCCATCCCTGGCGGCTCCGCCTCCTTCGAGGACGAGGAGCCCCTCCTTGACGAGCTCGGCATCCACCCTGACCAAATCTGGAGAAAAACCAAGTCTATTCTCAACCCGTTCCGGTCCAACCCGGCGGTCCACAAGGACTCGGACCTCTCCGGCCCGATCCTCCTTTACATGTCTCTCTGCCTCTTCCAACTCCTCGCGGGAAAAATCCAGTTCGGCGTTATCCTCGGATGGATCGTCGTCTCTTCCATCTTCCTCTACATCGTCTTCAACATGTTGGCTGGGCGTAACGGCAATCTCGACCTGCACAGGTGTACGTCCGTGATTGGGTATTGTATGCTGCCCGTGGTGATCTTATCGGCCGCCTCGCTCTTCGTCCCCCAAGGCGGGAGCTTCAGGATTGCCGTGGCTGCCGTCTTTGTGTTGTGGGCCACGAGGGTGTGCACGGGGCTCATGGTTGCGCTTGCTGACGGTGGTGATGAGCATCGCGGGTTGATAGCGTATGCTTGTTTCTTGATTTACACTCTGTTTTCGCTTCTTGTGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

255

Amino Acids

27.06

Weight (kDa)

6.88

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 525
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 2 cut(s) 19, 100
AccII CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
AclWI GGATC 5 cut(s) 60, 73, 130, 367, 455
AcoI YGGCCR 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 2 cut(s) 21, 529
AfiI CCNNNNNNNGG 5 cut(s) 44, 45, 540, 599, 600
AflIII ACRYGT 2 cut(s) 384, 486
AgsI TTSAA 2 cut(s) 110, 484
AjnI CCWGG 1 cut(s) 223
AleI CACNNNNGTG 1 cut(s) 650
AluBI AGCT 2 cut(s) 271, 606
AluI AGCT 2 cut(s) 271, 606
Alw21I GWGCWC 2 cut(s) 273, 659
Alw26I GTCTC 2 cut(s) 393, 460
Alw44I GTGCAC 1 cut(s) 655
AlwI GGATC 5 cut(s) 60, 73, 130, 367, 455
AoxI GGCC 4 cut(s) 199, 367, 573, 642
ApaLI GTGCAC 1 cut(s) 655
ApeKI GCWGC 3 cut(s) 167, 553, 623
Asp700I GAANNNNTTC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 4 cut(s) 59, 103, 120, 676
AspS9I GGNCC 6 cut(s) 200, 330, 343, 358, 368, 642
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 574, 701
AvaII GGWCC 3 cut(s) 330, 343, 358
BaeGI GKGCMC 1 cut(s) 659
BamHI GGATCC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 19, 100
BanII GRGCYC 3 cut(s) 258, 273, 666
BauI CACGAG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 2 cut(s) 273, 659
BbvI GCAGC 3 cut(s) 154, 540, 610
BccI CCATC 3 cut(s) 227, 438, 470
BceAI ACGGC 6 cut(s) 44, 88, 114, 520, 602, 611
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 393, 460
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 2 cut(s) 60, 104
BfuAI ACCTGC 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 8 cut(s) 88, 168, 171, 174, 229, 554, 576, 624
BlsI GCNGC 8 cut(s) 89, 169, 172, 175, 230, 555, 577, 625
Bme1390I CCNGG 2 cut(s) 225, 338
Bme18I GGWCC 3 cut(s) 330, 343, 358
BmgT120I GGNCC 6 cut(s) 200, 330, 343, 358, 368, 642
BmiI GGNNCC 7 cut(s) 21, 50, 67, 102, 211, 232, 255
BmrFI CCNGG 2 cut(s) 225, 338
BmsI GCATC 2 cut(s) 285, 706
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 2 cut(s) 9, 316
BpuMI CCSGG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 223, 439, 558, 595, 618
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 45, 540, 599, 600
Bse1I ACTGG 2 cut(s) 26, 424
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 5 cut(s) 223, 439, 558, 595, 618
BseGI GGATG 4 cut(s) 75, 219, 276, 449
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 5 cut(s) 44, 45, 540, 599, 600
BseNI ACTGG 2 cut(s) 26, 424
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 573
BseXI GCAGC 3 cut(s) 154, 540, 610
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
Bsh1285I CGRYCG 2 cut(s) 207, 576
BshFI GGCC 4 cut(s) 201, 369, 575, 644
BshNI GGYRCC 2 cut(s) 19, 100
BsiEI CGRYCG 2 cut(s) 207, 576
BsiHKAI GWGCWC 2 cut(s) 273, 659
BsiSI CCGG 4 cut(s) 42, 328, 338, 366
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 5 cut(s) 44, 45, 540, 599, 600
BsmAI GTCTC 2 cut(s) 393, 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 4 cut(s) 201, 369, 575, 644
Bsp1286I GDGCHC 4 cut(s) 258, 273, 659, 666
Bsp143I GATC 6 cut(s) 65, 135, 204, 372, 447, 564
Bsp68I TCGCGA 1 cut(s) 95
BspANI GGCC 4 cut(s) 201, 369, 575, 644
BspFNI CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
BspLI GGNNCC 7 cut(s) 21, 50, 67, 102, 211, 232, 255
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 5 cut(s) 60, 73, 130, 367, 455
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 2 cut(s) 19, 100
BsrI ACTGG 2 cut(s) 26, 424
BssECI CCNNGG 5 cut(s) 223, 439, 558, 595, 618
BssMI GATC 6 cut(s) 65, 135, 204, 372, 447, 564
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 595
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 4 cut(s) 197, 404, 463, 590
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 678
BstDSI CCRYGG 2 cut(s) 558, 618
BstF5I GGATG 4 cut(s) 75, 219, 276, 449
BstFNI CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
BstH2I RGCGCY 2 cut(s) 60, 104
BstHHI GCGC 4 cut(s) 59, 103, 120, 676
BstKTI GATC 6 cut(s) 68, 138, 207, 375, 450, 567
BstMAI GTCTC 2 cut(s) 393, 460
BstMBI GATC 6 cut(s) 65, 135, 204, 372, 447, 564
BstMCI CGRYCG 2 cut(s) 207, 576
BstMWI GCNNNNNNNGC 3 cut(s) 173, 207, 623
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 388, 490
BstSCI CCNGG 2 cut(s) 223, 336
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
BstV1I GCAGC 3 cut(s) 154, 540, 610
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 1 cut(s) 573
BsuRI GGCC 4 cut(s) 201, 369, 575, 644
BtgI CCRYGG 2 cut(s) 558, 618
BtgZI GCGATG 1 cut(s) 683
BtsCI GGATG 4 cut(s) 75, 219, 276, 449
BtsIMutI CAGTG 1 cut(s) 33
BtuMI TCGCGA 1 cut(s) 95
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 678
CfoI GCGC 4 cut(s) 59, 103, 120, 676
Cfr13I GGNCC 6 cut(s) 200, 330, 343, 358, 368, 642
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 20, 528
CviAII CATG 4 cut(s) 145, 385, 487, 667
CviQI GTAC 2 cut(s) 20, 528
DinI GGCGCC 1 cut(s) 102
DpnI GATC 6 cut(s) 67, 137, 206, 374, 449, 566
DpnII GATC 6 cut(s) 65, 135, 204, 372, 447, 564
EaeI YGGCCR 1 cut(s) 573
EagI CGGCCG 1 cut(s) 573
Eam1104I CTCTTC 4 cut(s) 197, 404, 463, 590
EarI CTCTTC 4 cut(s) 197, 404, 463, 590
EciI GGCGGA 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 3 cut(s) 258, 273, 666
Eco47I GGWCC 3 cut(s) 330, 343, 358
Eco52I CGGCCG 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 3 cut(s) 258, 273, 666
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 4 cut(s) 148, 388, 490, 670
FaiI YATR 6 cut(s) 146, 386, 488, 551, 668, 717
FaqI GGGAC 1 cut(s) 575
FatI CATG 4 cut(s) 144, 384, 486, 666
FauI CCCGC 4 cut(s) 38, 406, 593, 695
Fnu4HI GCNGC 8 cut(s) 88, 168, 171, 174, 229, 554, 576, 624
FokI GGATG 4 cut(s) 62, 206, 263, 456
FriOI GRGCYC 3 cut(s) 258, 273, 666
Fsp4HI GCNGC 8 cut(s) 88, 168, 171, 174, 229, 554, 576, 624
FspBI CTAG 1 cut(s) 54
GlaI GCGC 4 cut(s) 58, 102, 119, 675
GluI GCNGC 8 cut(s) 88, 168, 171, 174, 229, 554, 576, 624
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 9, 316
HaeII RGCGCY 2 cut(s) 60, 104
HaeIII GGCC 4 cut(s) 201, 369, 575, 644
HapII CCGG 4 cut(s) 42, 328, 338, 366
HgaI GACGC 1 cut(s) 79
HhaI GCGC 4 cut(s) 59, 103, 120, 676
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 148, 388, 490, 670
Hin6I GCGC 4 cut(s) 57, 101, 118, 674
HinP1I GCGC 4 cut(s) 57, 101, 118, 674
HinfI GANTC 1 cut(s) 353
HpaII CCGG 4 cut(s) 42, 328, 338, 366
HphI GGTGA 2 cut(s) 574, 701
Hpy166II GTNNAC 3 cut(s) 346, 528, 657
Hpy188I TCNGA 3 cut(s) 65, 358, 443
Hpy188III TCNNGA 5 cut(s) 94, 295, 512, 610, 727
Hpy8I GTNNAC 3 cut(s) 346, 528, 657
Hpy99I CGWCG 4 cut(s) 65, 95, 100, 455
HpyAV CCTTC 3 cut(s) 151, 160, 250
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 520, 657
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 207, 623
HpySE526I ACGT 1 cut(s) 530
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 148, 388, 490, 670
HspAI GCGC 4 cut(s) 57, 101, 118, 674
KasI GGCGCC 1 cut(s) 100
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 6 cut(s) 65, 135, 204, 372, 447, 564
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 5 cut(s) 125, 215, 236, 253, 603
Lsp1109I GCAGC 3 cut(s) 154, 540, 610
LweI GCATC 2 cut(s) 285, 706
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 1 cut(s) 500
MalI GATC 6 cut(s) 67, 137, 206, 374, 449, 566
MboI GATC 6 cut(s) 65, 135, 204, 372, 447, 564
MboII GAAGA 6 cut(s) 184, 391, 450, 457, 472, 577
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 4 cut(s) 258, 273, 659, 666
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 4 cut(s) 43, 93, 357, 427
MroXI GAANNNNTTC 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 4 cut(s) 42, 328, 338, 366
MspR9I CCNGG 2 cut(s) 225, 338
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 6 cut(s) 17, 90, 95, 118, 413, 702
MwoI GCNNNNNNNGC 3 cut(s) 173, 207, 623
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 1 cut(s) 338
NdeII GATC 6 cut(s) 65, 135, 204, 372, 447, 564
NlaIII CATG 4 cut(s) 148, 388, 490, 670
NlaIV GGNNCC 7 cut(s) 21, 50, 67, 102, 211, 232, 255
NmeAIII GCCGAG 2 cut(s) 143, 252
NruI TCGCGA 1 cut(s) 95
NspI RCATGY 2 cut(s) 388, 490
OliI CACNNNNGTG 1 cut(s) 650
PciI ACATGT 2 cut(s) 384, 486
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 510
PdmI GAANNNNTTC 1 cut(s) 11
PkrI GCNGC 8 cut(s) 89, 169, 172, 175, 230, 555, 577, 625
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 347
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 2 cut(s) 384, 486
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 7 cut(s) 21, 50, 67, 102, 211, 232, 255
PspPI GGNCC 6 cut(s) 200, 330, 343, 358, 368, 642
PsuI RGATCY 1 cut(s) 65
PvuI CGATCG 1 cut(s) 207
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 2 cut(s) 21, 529
RsaNI GTAC 2 cut(s) 20, 528
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 590
SatI GCNGC 8 cut(s) 88, 168, 171, 174, 229, 554, 576, 624
Sau3AI GATC 6 cut(s) 65, 135, 204, 372, 447, 564
Sau96I GGNCC 6 cut(s) 200, 330, 343, 358, 368, 642
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 225, 338
SduI GDGCHC 4 cut(s) 258, 273, 659, 666
SetI ASST 7 cut(s) 25, 273, 363, 519, 527, 533, 608
SfaNI GCATC 2 cut(s) 285, 706
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 3 cut(s) 330, 343, 358
SmiMI CAYNNNNRTG 1 cut(s) 650
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 223, 336
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 1 cut(s) 533
TaqI TCGA 4 cut(s) 134, 153, 243, 513
TauI GCSGC 5 cut(s) 90, 173, 176, 231, 578
TscAI CASTG 1 cut(s) 33
TseI GCWGC 3 cut(s) 167, 553, 623
TspDTI ATGAA 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 655
VpaK11BI GGWCC 3 cut(s) 330, 343, 358
XceI RCATGY 2 cut(s) 388, 490
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.