Rw3G026220

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007103
Physical Location & Seq
Forward (+)
35773645 .. 35774424
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026220.1

Sequence Viewer

Length: 780 bp
ATGGCGAAGGAGGCGAAGCAGTTCGCCATCCCCCCGGTGGTTTTCCCCTCCGGCGGAAACCCCAGTGCCGGATCCAACATCCAGCAACGCCGCGTCCCAACGGCGCCGTTTCAACCACCCCGATCCTCCGCCTCCAGCATCCCCTTCATGTCCTTCGACATAGGCTCAGCCGCCGCCGCTTCCACCTCCGGCAGCTTTTACGGCGGTCCCATCGGCTCCGGCTCCTCCGCCCTCCCCGGAGCCGGAGGCACCGGCTTCGAAGACGAGGAGCCTCTTCTCGACGAGCTCGGTATTCACCCCGATCAAATCTGGCGGAAGACCAAGTCCATTCTCCACCCCTTCCGGGTCAACCCGGACCTCCACAAGGAGTCCGACATGTCCGGGCCCTTCCTCCTCTACGTCTCCCTCTGCCTCTTTCAGTTACTCGCCGGCAAGATCCAATTCGGCGTAATACTCGGCTGGATCATCGTCTCCTTCTTCTTCCTGTACGTCGTCGTCAACATGTTGGCGGGCCGTAACGGCAACCTAGAGCTGCACAGGTGCGCCAGCGTCGTTGGCTACTCTTTGTTGCCGGTGGTGATTTTATCGGCCACCATGCTCTTTGTGCCTCAAGGCGGGAGTTTCGTGTTCGCAGTGGCTGCCGTGTTTGTTTTATGGGCCACAAGGGTTTGCACCGGCCTCATGGTTGCGCTCGTCGACGGCGGTGATGAGCATCGCGGCCTCATTGCGTATGCTTGTTTCTTGATTTACACTCTCTTTTCATTTCTGGTTATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

259

Amino Acids

27.68

Weight (kDa)

6.5

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 109 - 257 4.3e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 103, 248
AccI GTMKAC 1 cut(s) 696
AccII CGCG 2 cut(s) 93, 717
AclWI GGATC 5 cut(s) 66, 79, 117, 430, 470
AcoI YGGCCR 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 7 cut(s) 37, 53, 68, 242, 343, 364, 614
AflIII ACRYGT 2 cut(s) 375, 501
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 3 cut(s) 195, 286, 532
AluI AGCT 3 cut(s) 195, 286, 532
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 406, 475
AlwI GGATC 5 cut(s) 66, 79, 117, 430, 470
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 6 cut(s) 383, 511, 588, 657, 676, 718
ApaI GGGCCC 1 cut(s) 387
ApeKI GCWGC 3 cut(s) 192, 532, 638
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 3 cut(s) 106, 545, 691
AspS9I GGNCC 6 cut(s) 206, 355, 383, 384, 511, 657
AsuC2I CCSGG 5 cut(s) 35, 237, 344, 353, 382
AsuHPI GGTGA 3 cut(s) 287, 589, 716
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 2 cut(s) 206, 355
BaeGI GKGCMC 1 cut(s) 387
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 103, 248
BanII GRGCYC 2 cut(s) 288, 387
BbsI GAAGAC 2 cut(s) 267, 323
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 204, 519, 625
BccI CCATC 2 cut(s) 35, 218
BceAI ACGGC 7 cut(s) 91, 117, 217, 498, 535, 626, 715
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcnI CCSGG 5 cut(s) 35, 237, 344, 353, 382
BcoDI GTCTC 2 cut(s) 406, 475
BfaI CTAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 519
BisI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 533, 639, 718
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 534, 640, 719
Bme1390I CCNGG 5 cut(s) 35, 237, 344, 353, 382
Bme18I GGWCC 2 cut(s) 206, 355
BmgT120I GGNCC 6 cut(s) 206, 355, 383, 384, 511, 657
BmiI GGNNCC 9 cut(s) 73, 105, 208, 217, 223, 241, 250, 270, 385
BmrFI CCNGG 5 cut(s) 35, 237, 344, 353, 382
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 147, 721
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 267, 323
BpmI CTGGAG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 594
BpuMI CCSGG 5 cut(s) 35, 237, 344, 353, 382
BsaBI GATNNNNATC 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 33, 235
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 53, 68, 242, 343, 364, 614
Bse118I RCCGGY 4 cut(s) 251, 428, 571, 674
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 723
Bse8I GATNNNNATC 1 cut(s) 711
BseDI CCNNGG 2 cut(s) 33, 235
BseGI GGATG 3 cut(s) 27, 78, 138
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 7 cut(s) 37, 53, 68, 242, 343, 364, 614
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 3 cut(s) 214, 281, 383
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 3 cut(s) 204, 519, 625
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 2 cut(s) 93, 717
BshFI GGCC 6 cut(s) 385, 513, 590, 659, 678, 720
BshNI GGYRCC 2 cut(s) 103, 248
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 2 cut(s) 80, 192
BslI CCNNNNNNNGG 7 cut(s) 37, 53, 68, 242, 343, 364, 614
BsmAI GTCTC 2 cut(s) 406, 475
BsmBI CGTCTC 2 cut(s) 406, 475
BsmFI GGGAC 2 cut(s) 80, 192
BsnI GGCC 6 cut(s) 385, 513, 590, 659, 678, 720
Bsp119I TTCGAA 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 288, 387
Bsp143I GATC 5 cut(s) 71, 122, 301, 435, 462
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 6 cut(s) 385, 513, 590, 659, 678, 720
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 2 cut(s) 93, 717
BspLI GGNNCC 9 cut(s) 73, 105, 208, 217, 223, 241, 250, 270, 385
BspPI GGATC 5 cut(s) 66, 79, 117, 430, 470
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 2 cut(s) 103, 248
BsrDI GCAATG 1 cut(s) 723
BsrFI RCCGGY 4 cut(s) 251, 428, 571, 674
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 4 cut(s) 251, 428, 571, 674
BssECI CCNNGG 2 cut(s) 33, 235
BssMI GATC 5 cut(s) 71, 122, 301, 435, 462
BssNI GRCGYC 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 430, 511, 547
BstDEI CTNAG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 27, 78, 138
BstFNI CGCG 2 cut(s) 93, 717
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 106, 545, 691
BstKTI GATC 5 cut(s) 74, 125, 304, 438, 465
BstMAI GTCTC 2 cut(s) 406, 475
BstMBI GATC 5 cut(s) 71, 122, 301, 435, 462
BstMWI GCNNNNNNNGC 7 cut(s) 11, 176, 201, 519, 555, 604, 638
BstNSI RCATGY 2 cut(s) 379, 505
BstSCI CCNGG 5 cut(s) 33, 235, 342, 351, 380
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 2 cut(s) 93, 717
BstV1I GCAGC 3 cut(s) 204, 519, 625
BstV2I GAAGAC 2 cut(s) 267, 323
BstX2I RGATCY 2 cut(s) 71, 435
BstYI RGATCY 2 cut(s) 71, 435
BsuRI GGCC 6 cut(s) 385, 513, 590, 659, 678, 720
BtgZI GCGATG 1 cut(s) 698
BtsCI GGATG 3 cut(s) 27, 78, 138
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 70, 639
Cac8I GCNNGC 3 cut(s) 430, 511, 547
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 3 cut(s) 106, 545, 691
Cfr10I RCCGGY 4 cut(s) 251, 428, 571, 674
Cfr13I GGNCC 6 cut(s) 206, 355, 383, 384, 511, 657
CseI GACGC 2 cut(s) 82, 538
Csp6I GTAC 1 cut(s) 487
CviAII CATG 5 cut(s) 148, 376, 502, 595, 682
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 1 cut(s) 166
DinI GGCGCC 1 cut(s) 105
DpnI GATC 5 cut(s) 73, 124, 303, 437, 464
DpnII GATC 5 cut(s) 71, 122, 301, 435, 462
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 4 cut(s) 69, 118, 217, 328
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 288, 387
Eco47I GGWCC 2 cut(s) 206, 355
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 384
EcoT38I GRGCYC 2 cut(s) 288, 387
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 406, 475
FaeI CATG 5 cut(s) 151, 379, 505, 598, 685
FaiI YATR 9 cut(s) 149, 161, 377, 503, 596, 655, 683, 732, 773
FaqI GGGAC 2 cut(s) 80, 192
FatI CATG 5 cut(s) 147, 375, 501, 594, 681
FauI CCCGC 2 cut(s) 502, 608
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 533, 639, 718
FokI GGATG 3 cut(s) 14, 65, 125
FriOI GRGCYC 2 cut(s) 288, 387
Fsp4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 533, 639, 718
FspBI CTAG 1 cut(s) 527
GlaI GCGC 3 cut(s) 105, 544, 690
GluI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 533, 639, 718
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 6 cut(s) 385, 513, 590, 659, 678, 720
HgaI GACGC 2 cut(s) 82, 538
HhaI GCGC 3 cut(s) 106, 545, 691
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 151, 379, 505, 598, 685
Hin6I GCGC 3 cut(s) 104, 543, 689
HinP1I GCGC 3 cut(s) 104, 543, 689
HincII GTYRAC 3 cut(s) 349, 499, 697
HindII GTYRAC 3 cut(s) 349, 499, 697
HinfI GANTC 1 cut(s) 368
HphI GGTGA 3 cut(s) 287, 589, 716
Hpy166II GTNNAC 3 cut(s) 349, 499, 697
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 278, 742
Hpy8I GTNNAC 3 cut(s) 349, 499, 697
Hpy99I CGWCG 6 cut(s) 284, 494, 497, 554, 698, 701
HpyAV CCTTC 5 cut(s) 154, 163, 349, 397, 484
HpyCH4IV ACGT 2 cut(s) 399, 489
HpyCH4V TGCA 2 cut(s) 535, 672
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 176, 201, 519, 555, 604, 638
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 399, 489
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 151, 379, 505, 598, 685
HspAI GCGC 3 cut(s) 104, 543, 689
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Kzo9I GATC 5 cut(s) 71, 122, 301, 435, 462
LmnI GCTCC 4 cut(s) 221, 227, 239, 268
Lsp1109I GCAGC 3 cut(s) 204, 519, 625
LweI GCATC 2 cut(s) 147, 721
MaeI CTAG 1 cut(s) 527
MaeII ACGT 2 cut(s) 399, 489
MaeIII GTNAC 2 cut(s) 420, 515
MalI GATC 5 cut(s) 73, 124, 303, 437, 464
MboI GATC 5 cut(s) 71, 122, 301, 435, 462
MboII GAAGA 5 cut(s) 266, 272, 328, 469, 472
MflI RGATCY 2 cut(s) 71, 435
MhlI GDGCHC 2 cut(s) 288, 387
MluCI AATT 1 cut(s) 440
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 2 cut(s) 99, 396
MroNI GCCGGC 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 20
MspR9I CCNGG 5 cut(s) 35, 237, 344, 353, 382
MvnI CGCG 2 cut(s) 93, 717
MwoI GCNNNNNNNGC 7 cut(s) 11, 176, 201, 519, 555, 604, 638
NaeI GCCGGC 1 cut(s) 430
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 5 cut(s) 35, 237, 344, 353, 382
NdeII GATC 5 cut(s) 71, 122, 301, 435, 462
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 5 cut(s) 151, 379, 505, 598, 685
NlaIV GGNNCC 9 cut(s) 73, 105, 208, 217, 223, 241, 250, 270, 385
NmeAIII GCCGAG 1 cut(s) 435
NspI RCATGY 2 cut(s) 379, 505
NspV TTCGAA 1 cut(s) 258
PciI ACATGT 2 cut(s) 375, 501
PdiI GCCGGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 534, 640, 719
PleI GAGTC 1 cut(s) 376
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 376
PscI ACATGT 2 cut(s) 375, 501
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 9 cut(s) 73, 105, 208, 217, 223, 241, 250, 270, 385
PspOMI GGGCCC 1 cut(s) 383
PspPI GGNCC 6 cut(s) 206, 355, 383, 384, 511, 657
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 2 cut(s) 71, 435
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 695
SatI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 533, 639, 718
Sau3AI GATC 5 cut(s) 71, 122, 301, 435, 462
Sau96I GGNCC 6 cut(s) 206, 355, 383, 384, 511, 657
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 5 cut(s) 35, 237, 344, 353, 382
SduI GDGCHC 2 cut(s) 288, 387
SetI ASST 9 cut(s) 188, 197, 288, 360, 402, 492, 528, 534, 542
SfaNI GCATC 2 cut(s) 147, 721
SfoI GGCGCC 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 258
SgrDI CGTCGACG 1 cut(s) 695
SinI GGWCC 2 cut(s) 206, 355
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
Sse9I AATT 1 cut(s) 440
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 1 cut(s) 527
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 5 cut(s) 33, 235, 342, 351, 380
TaiI ACGT 2 cut(s) 402, 492
TaqI TCGA 4 cut(s) 156, 258, 279, 696
TasI AATT 1 cut(s) 440
TauI GCSGC 5 cut(s) 93, 173, 176, 179, 720
TscAI CASTG 2 cut(s) 70, 639
TseI GCWGC 3 cut(s) 192, 532, 638
TspDTI ATGAA 2 cut(s) 136, 750
TspRI CASTG 2 cut(s) 70, 639
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 206, 355
XagI CCTNNNNNAGG 1 cut(s) 362
XceI RCATGY 2 cut(s) 379, 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.