AT3G52760

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007103
Physical Location & Seq
Reverse (-)
19553679 .. 19554858
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52760.1

Sequence Viewer

Length: 774 bp
ATGACGAAGGATTTTCCAATTCCACCGGTTGTTTTCCCCACCAGTGGATCATCTCCGGCCACCGCAAATGTTCAGCAACGCCGAGTTCCCACAGCTCCTTACCAACCACCACGTCAATCCTCCGCTTCATCTTCAATCCCTTTCATTCCATTTGAAATCGGATCCGCCGCCGTTTCAATGCCGGCGGGACCATTCGACGGAACAATCGCTTCATCTGCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTGAGGATGAGGAGCCTTTACTCGACGAACTCGGTATCCATCCAGATCAAATCTGGAAGAAAACTAGATCGATTCTCAATCCTTTTCGAATCAATCAGACTGTTCACAAAGATTCAGATCTCTCTGGTCCGATCTTCTTATACCTTGCGCTTTGCTTATTTCAATTGCTCGCTGGGAAGATACAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCTTCTATCTTCTTGTACATTGTCTTCAATATGCTTGCTGGTAGAAATGGGAATCTTAATCTTCATACTTGTACGAGTTTAGTTGGTTACTCTCTGCTTCCCGTTGTGATTTTGTCCGCGGTGTCCTTGTTTGTGCCACAAGGTGCTGGTCCCGTTCGGTTTGTGCTCGGTGCGGCTTTCGTGTTGTGGGCTACTAGAGCTTGTTCTAATCTGGTGGTGTCTCTTGCTGATGGAGGAGAAGAGCACCGTGGATTGATTTCGTACGCCTGTTTCTTAATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

257

Amino Acids

27.64

Weight (kDa)

6.89

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 106 - 255 1.3e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 581
AciI CCGC 8 cut(s) 63, 123, 165, 168, 185, 579, 581, 635
AclWI GGATC 3 cut(s) 55, 156, 169
AcoI YGGCCR 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 3 cut(s) 479, 535, 725
AfiI CCNNNNNNNGG 2 cut(s) 44, 197
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 5 cut(s) 135, 155, 177, 410, 490
AjiI CACGTC 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 95, 662
AluI AGCT 2 cut(s) 95, 662
Alw21I GWGCWC 2 cut(s) 630, 708
Alw26I GTCTC 2 cut(s) 241, 687
AlwI GGATC 3 cut(s) 55, 156, 169
AoxI GGCC 1 cut(s) 57
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 3 cut(s) 188, 374, 611
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 3 cut(s) 188, 374, 611
BamHI GGATCC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 630, 708
BccI CCATC 2 cut(s) 294, 686
BceAI ACGGC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 241, 687
BfaI CTAG 2 cut(s) 312, 657
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 1 cut(s) 364
BisI GCNGC 2 cut(s) 168, 636
BlsI GCNGC 2 cut(s) 169, 637
Bme18I GGWCC 3 cut(s) 188, 374, 611
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 188, 374, 611
BmiI GGNNCC 4 cut(s) 163, 189, 261, 613
BmsI GCATC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 478
Bpu14I TTCGAA 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 579, 709
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 197
Bse118I RCCGGY 2 cut(s) 25, 181
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 579, 709
BseGI GGATG 2 cut(s) 259, 286
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 44, 197
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 246, 272, 711
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 1 cut(s) 59
BshTI ACCGGT 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 630, 708
BsiSI CCGG 3 cut(s) 26, 56, 182
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 201, 597
BslI CCNNNNNNNGG 2 cut(s) 44, 197
BsmAI GTCTC 2 cut(s) 241, 687
BsmFI GGGAC 2 cut(s) 201, 597
BsnI GGCC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 630, 708
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 6 cut(s) 47, 161, 292, 314, 364, 378
BspACI CCGC 8 cut(s) 63, 123, 165, 168, 185, 579, 581, 635
BspANI GGCC 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 317
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 4 cut(s) 163, 189, 261, 613
BspPI GGATC 3 cut(s) 55, 156, 169
BspQI GCTCTTC 1 cut(s) 696
BspT104I TTCGAA 1 cut(s) 334
BsrFI RCCGGY 2 cut(s) 25, 181
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 2 cut(s) 25, 181
BssECI CCNNGG 2 cut(s) 579, 709
BssMI GATC 6 cut(s) 47, 161, 292, 314, 364, 378
Bst4CI ACNGT 3 cut(s) 349, 432, 710
Bst6I CTCTTC 1 cut(s) 696
BstAUI TGTACA 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 183, 417, 498
BstDSI CCRYGG 2 cut(s) 579, 709
BstF5I GGATG 2 cut(s) 259, 286
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 6 cut(s) 50, 164, 295, 317, 367, 381
BstMAI GTCTC 2 cut(s) 241, 687
BstMBI GATC 6 cut(s) 47, 161, 292, 314, 364, 378
BstMWI GCNNNNNNNGC 2 cut(s) 215, 659
BstUI CGCG 1 cut(s) 581
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 161, 364
BstYI RGATCY 2 cut(s) 161, 364
Bsu15I ATCGAT 1 cut(s) 317
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 59
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 2 cut(s) 579, 709
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 259, 286
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 183, 417, 498
CfoI GCGC 1 cut(s) 397
Cfr10I RCCGGY 2 cut(s) 25, 181
Cfr13I GGNCC 3 cut(s) 188, 374, 611
Cfr42I CCGCGG 1 cut(s) 582
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 3 cut(s) 478, 534, 724
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 6 cut(s) 59, 95, 262, 638, 653, 662
CviKI_1 RGCY 6 cut(s) 59, 95, 262, 638, 653, 662
CviQI GTAC 3 cut(s) 478, 534, 724
DpnI GATC 6 cut(s) 49, 163, 294, 316, 366, 380
DpnII GATC 6 cut(s) 47, 161, 292, 314, 364, 378
DraIII CACNNNGTG 1 cut(s) 605
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 3 cut(s) 188, 374, 611
FaiI YATR 5 cut(s) 388, 443, 494, 528, 744
FaqI GGGAC 2 cut(s) 201, 597
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 168, 636
FokI GGATG 2 cut(s) 266, 273
Fsp4HI GCNGC 2 cut(s) 168, 636
FspBI CTAG 2 cut(s) 312, 657
GlaI GCGC 1 cut(s) 396
GluI GCNGC 2 cut(s) 168, 636
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 1 cut(s) 59
HapII CCGG 3 cut(s) 26, 56, 182
HhaI GCGC 1 cut(s) 397
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 5 cut(s) 234, 319, 336, 359, 514
HpaII CCGG 3 cut(s) 26, 56, 182
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 161, 345, 364, 378
Hpy188III TCNNGA 2 cut(s) 290, 301
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 200, 275
HpyCH4III ACNGT 3 cut(s) 349, 432, 710
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 659
HpySE526I ACGT 1 cut(s) 112
HspAI GCGC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
KspI CCGCGG 1 cut(s) 582
Kzo9I GATC 6 cut(s) 47, 161, 292, 314, 364, 378
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 2 cut(s) 100, 259
LweI GCATC 1 cut(s) 227
MaeI CTAG 2 cut(s) 312, 657
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 548
MalI GATC 6 cut(s) 49, 163, 294, 316, 366, 380
MboI GATC 6 cut(s) 47, 161, 292, 314, 364, 378
MboII GAAGA 9 cut(s) 123, 316, 373, 436, 456, 463, 478, 515, 713
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 2 cut(s) 161, 364
MhlI GDGCHC 2 cut(s) 630, 708
MluCI AATT 2 cut(s) 18, 410
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 5 cut(s) 130, 224, 244, 250, 689
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 2 cut(s) 519, 737
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 3 cut(s) 26, 56, 182
MunI CAATTG 1 cut(s) 410
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 215, 659
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 6 cut(s) 47, 161, 292, 314, 364, 378
NgoMIV GCCGGC 1 cut(s) 181
NlaIV GGNNCC 4 cut(s) 163, 189, 261, 613
NmeAIII GCCGAG 1 cut(s) 107
NspV TTCGAA 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 696
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 319, 336, 359, 514
Pfl23II CGTACG 1 cut(s) 723
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 2 cut(s) 169, 637
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 419
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 4 cut(s) 163, 189, 261, 613
PspPI GGNCC 3 cut(s) 188, 374, 611
PsuI RGATCY 2 cut(s) 161, 364
RsaI GTAC 3 cut(s) 479, 535, 725
RsaNI GTAC 3 cut(s) 478, 534, 724
SacII CCGCGG 1 cut(s) 582
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 2 cut(s) 519, 737
SatI GCNGC 2 cut(s) 168, 636
Sau3AI GATC 6 cut(s) 47, 161, 292, 314, 364, 378
Sau96I GGNCC 3 cut(s) 188, 374, 611
SchI GAGTC 1 cut(s) 243
SduI GDGCHC 2 cut(s) 630, 708
SetI ASST 5 cut(s) 97, 115, 393, 607, 664
SfaNI GCATC 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 582
SinI GGWCC 3 cut(s) 188, 374, 611
Sse9I AATT 2 cut(s) 18, 410
SsiI CCGC 8 cut(s) 63, 123, 165, 168, 185, 579, 581, 635
SspMI CTAG 2 cut(s) 312, 657
TaaI ACNGT 3 cut(s) 349, 432, 710
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 195, 270, 317, 334
TasI AATT 2 cut(s) 18, 410
TatI WGTACW 1 cut(s) 477
TauI GCSGC 2 cut(s) 170, 638
TfiI GAWTC 4 cut(s) 319, 336, 359, 514
Tru1I TTAA 2 cut(s) 519, 737
Tru9I TTAA 2 cut(s) 519, 737
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 117, 133, 201, 515
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 3 cut(s) 188, 374, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 2 cut(s) 312, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.