Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007103

Physical Location & Seq

Genomic Coordinates Forward (+)

10602763 .. 10606312

Gene Structure 3550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGTATGGAAGCTCGGGTTGGCGTTGTAGAAGGAGGCCAGAGAGCCCTGAACTCAGCTCTGAATCAGCAACCCAAGCAGTCCCTGAATCCCCAATCCCAGATAGGCGCCGTGAATCAGCTCTTGGCTGGTGGAATTGCTGGTGCGTTTAGCAAAACCTGTACCGCACCACTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCATTCTGATGTTTCAGCATTGAGTAAGGCGAGCATATGGCGAGAGGCTTCACGTATTGCCAATGAGGAAGGTTTTAGAGCATTTTGGAGAGGCAATCTCGTGACTATTGCTCATCGTCTTCCATATTCTTCAGTCAGCTTCTATGCTTATGAACGCTACAAGAAATTGTTGCATTCAATTATTGGTGAAGATCTTGGGGGTAATGCAACTGCCAATATGTGTGTACACTTTCTTGGTGGTGGGATGGCAGGTATTACAGCTGCCTCAGCTACGTATCCACTAGATCTTGTGAGGACACGTCTAGCAGCTCAGAGAAATGCACTATACTACAGAGGCATCGGGCATGCATTTCATACAATTTGCAGAGAAGAAGGATTTTTGGGATTGTATAAAGGACTTGGAGCAACTCTGTTGGGTGTTGGACCCAGCATAGCAATCAGTTTCTCAGTTTATGAGGCTTTGAGGTCTTTTTGGCAGTCTGAAAGGCCCAACGATTCTACAGTCATGGTGAGTCTTGCTTGCGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACATTCCCTCTAGATCTGGTGAGGCGAAGGATGCAATTGGAAGGGGCTGGCGGTCGTGCCCGTGTCTATAACACTGGCTTATTAGGAACTTTTAGGCACATAATCCAGAACGAAGGCCTGCTGGGCTTGTATAGAGGAATTCTGCCAGAATATTACAAGGTTGTTCCCAGTGTAGGCATTGTGTTCATGACGTACGAGACATTGAAAATGCTTCTGTCACGCATGCAGACAAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

334

Amino Acids

36.24

Weight (kDa)

9.64

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 128	3.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	142 - 230	5.3e-25	Mitochondrial carrier protein
Mito_carr	PF00153	236 - 329	4.3e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36300 AT3G52760
fragaria_vesca	FvH4_6g27040
malus_domestica	MD12G1023700.v1.1 MD14G1020900.v1.1
prunus_persica	Prupe.7G112800_v2.0.a1
pyrus_communis	pycom12g02210
rosa_chinensis	RchiOBHm_Chr3g0472991 RchiOBHm_Chr3g0491231
rosa_laevigata	RLG00000022852 RLG00000024039
rosa_multiflora	Rmu_co8300385.1_g000001 Rmu_sc0010986.1_g000006 Rmu_sc0014162.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393080
rosa_rugosa	Rorug03G0130500 Rorug03G0248500
rosa_samantha	Rh3AG297600 Rh3BG208600 Rh3BG333900 Rh3CG330600 Rh3DG331600
rosa_wichuraiana	Rw3G016090 Rw3G026220 Rw3G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	3 cut(s)	165, 732, 816
AcsI	RAATTY	1 cut(s)	903
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	3 cut(s)	163, 435, 959
AfiI	CCNNNNNNNGG	2 cut(s)	196, 938
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	387, 970
AjiI	CACGTC	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 107, 139
AluBI	AGCT	7 cut(s)	14, 59, 121, 348, 470, 479, 518
AluI	AGCT	7 cut(s)	14, 59, 121, 348, 470, 479, 518
Alw26I	GTCTC	1 cut(s)	956
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	3 cut(s)	37, 695, 880
ApeKI	GCWGC	2 cut(s)	470, 515
ApoI	RAATTY	1 cut(s)	903
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	632, 696
AsuHPI	GGTGA	4 cut(s)	175, 407, 730, 796
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	457, 527
BccI	CCATC	2 cut(s)	194, 448
BceAI	ACGGC	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	4 cut(s)	491, 512, 776, 1003
BfmI	CTRYAG	2 cut(s)	538, 708
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	888
BglII	AGATCT	3 cut(s)	400, 493, 778
BisI	GCNGC	3 cut(s)	471, 516, 733
BlsI	GCNGC	3 cut(s)	472, 517, 734
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	632, 696
BmiI	GGNNCC	2 cut(s)	109, 634
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	555, 786
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	475
BsaAI	YACGTR	2 cut(s)	263, 483
BsaHI	GRCGYC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 938
Bse1I	ACTGG	2 cut(s)	844, 933
Bse3DI	GCAATG	1 cut(s)	747
BseGI	GGATG	3 cut(s)	186, 459, 801
BseLI	CCNNNNNNNGG	2 cut(s)	196, 938
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	4 cut(s)	69, 489, 533, 669
BseNI	ACTGG	2 cut(s)	844, 933
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	2 cut(s)	457, 527
BseYI	CCCAGC	2 cut(s)	635, 886
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	3 cut(s)	39, 697, 882
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	820
BsiHKCI	CYCGRG	1 cut(s)	15
BsiWI	CGTACG	1 cut(s)	957
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	196, 938
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	3 cut(s)	211, 213, 382
BsnI	GGCC	3 cut(s)	39, 697, 882
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	49, 826
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	400, 493, 778
BspACI	CCGC	3 cut(s)	165, 732, 816
BspANI	GGCC	3 cut(s)	39, 697, 882
BspCNI	CTCAG	4 cut(s)	68, 488, 532, 668
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	2 cut(s)	109, 634
BspMI	ACCTGC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	844, 933
BssMI	GATC	3 cut(s)	400, 493, 778
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	712
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	2 cut(s)	173, 208
BstAUI	TGTACA	1 cut(s)	433
BstBAI	YACGTR	2 cut(s)	263, 483
BstC8I	GCNNGC	7 cut(s)	178, 241, 555, 730, 814, 884, 989
BstDEI	CTNAG	4 cut(s)	55, 475, 519, 655
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	186, 459, 801
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	403, 496, 781
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	3 cut(s)	400, 493, 778
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
BstNSI	RCATGY	2 cut(s)	557, 991
BstSFI	CTRYAG	2 cut(s)	538, 708
BstSLI	GKGCMC	1 cut(s)	826
BstSNI	TACGTA	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	457, 527
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	3 cut(s)	400, 493, 778
BstYI	RGATCY	3 cut(s)	400, 493, 778
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	39, 697, 882
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	186, 459, 801
BtsIMutI	CAGTG	2 cut(s)	837, 940
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	7 cut(s)	178, 241, 555, 730, 814, 884, 989
CaiI	CAGNNNCTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	951
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	632, 696
Csp6I	GTAC	3 cut(s)	162, 434, 958
CviAII	CATG	4 cut(s)	554, 715, 952, 988
CviQI	GTAC	3 cut(s)	162, 434, 958
DdeI	CTNAG	4 cut(s)	55, 475, 519, 655
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	402, 495, 780
DpnII	GATC	3 cut(s)	400, 493, 778
Eco105I	TACGTA	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	903
EcoT22I	ATGCAT	2 cut(s)	213, 559
EcoT38I	GRGCYC	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	4 cut(s)	557, 718, 955, 991
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	553, 714, 951, 987
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	471, 516, 733
FokI	GGATG	3 cut(s)	173, 466, 808
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	471, 516, 733
FspBI	CTAG	4 cut(s)	491, 512, 776, 1003
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	471, 516, 733
GsaI	CCCAGC	2 cut(s)	639, 890
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	39, 697, 882
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	557, 718, 955, 991
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	64, 88, 115, 704, 721
HphI	GGTGA	4 cut(s)	175, 407, 730, 796
Hpy166II	GTNNAC	2 cut(s)	434, 436
Hpy188I	TCNGA	4 cut(s)	63, 217, 522, 691
Hpy188III	TCNNGA	4 cut(s)	310, 776, 871, 952
Hpy8I	GTNNAC	2 cut(s)	434, 436
HpyAV	CCTTC	6 cut(s)	26, 272, 575, 786, 800, 872
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	4 cut(s)	262, 482, 508, 956
HpyCH4V	TGCA	9 cut(s)	202, 211, 382, 416, 530, 557, 573, 799, 991
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
HpyF3I	CTNAG	4 cut(s)	55, 475, 519, 655
HpySE526I	ACGT	4 cut(s)	262, 482, 508, 956
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	557, 718, 955, 991
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	400, 493, 778
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	2 cut(s)	457, 527
LweI	GCATC	2 cut(s)	555, 786
MaeI	CTAG	4 cut(s)	491, 512, 776, 1003
MaeII	ACGT	4 cut(s)	262, 482, 508, 956
MaeIII	GTNAC	3 cut(s)	310, 981, 998
MalI	GATC	3 cut(s)	402, 495, 780
MboI	GATC	3 cut(s)	400, 493, 778
MboII	GAAGA	4 cut(s)	320, 330, 410, 590
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	3 cut(s)	400, 493, 778
MhlI	GDGCHC	2 cut(s)	49, 826
MluCI	AATT	6 cut(s)	135, 374, 387, 567, 800, 903
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	1 cut(s)	610
Mph1103I	ATGCAT	2 cut(s)	213, 559
MroXI	GAANNNNTTC	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	3 cut(s)	211, 213, 382
MwoI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
NarI	GGCGCC	1 cut(s)	108
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	3 cut(s)	400, 493, 778
NlaIII	CATG	4 cut(s)	557, 718, 955, 991
NlaIV	GGNNCC	2 cut(s)	109, 634
NmuCI	GTSAC	3 cut(s)	310, 981, 998
NsiI	ATGCAT	2 cut(s)	213, 559
NspI	RCATGY	2 cut(s)	557, 991
PaeI	GCATGC	2 cut(s)	557, 991
PagI	TCATGA	1 cut(s)	951
PceI	AGGCCT	1 cut(s)	882
PctI	GAATGC	3 cut(s)	211, 213, 382
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	4 cut(s)	64, 88, 115, 704
Pfl23II	CGTACG	1 cut(s)	957
PkrI	GCNGC	3 cut(s)	472, 517, 734
PleI	GAGTC	1 cut(s)	729
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	729
Ppu21I	YACGTR	2 cut(s)	263, 483
PspFI	CCCAGC	2 cut(s)	635, 886
PspLI	CGTACG	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	109, 634
PspPI	GGNCC	2 cut(s)	632, 696
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	400, 493, 778
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	163, 435, 959
RsaNI	GTAC	3 cut(s)	162, 434, 958
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	3 cut(s)	471, 516, 733
Sau3AI	GATC	3 cut(s)	400, 493, 778
Sau96I	GGNCC	2 cut(s)	632, 696
SchI	GAGTC	1 cut(s)	730
SduI	GDGCHC	2 cut(s)	49, 826
SfaNI	GCATC	2 cut(s)	555, 786
SfcI	CTRYAG	2 cut(s)	538, 708
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	483
SphI	GCATGC	2 cut(s)	557, 991
Sse9I	AATT	6 cut(s)	135, 374, 387, 567, 800, 903
SseBI	AGGCCT	1 cut(s)	882
SsiI	CCGC	3 cut(s)	165, 732, 816
SspDI	GGCGCC	1 cut(s)	107
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	4 cut(s)	491, 512, 776, 1003
StuI	AGGCCT	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	4 cut(s)	265, 485, 511, 959
TasI	AATT	6 cut(s)	135, 374, 387, 567, 800, 903
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	4 cut(s)	64, 88, 115, 704
TscAI	CASTG	2 cut(s)	844, 940
TseFI	GTSAC	3 cut(s)	310, 981, 998
TseI	GCWGC	2 cut(s)	470, 515
Tsp45I	GTSAC	3 cut(s)	310, 981, 998
TspDTI	ATGAA	3 cut(s)	375, 551, 940
TspRI	CASTG	2 cut(s)	844, 940
VpaK11BI	GGWCC	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	903
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	2 cut(s)	557, 991
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	4 cut(s)	491, 512, 776, 1003
Zsp2I	ATGCAT	2 cut(s)	213, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.