Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300385.1

Orthogroup ID

OG0007103

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 812

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 575 bp

atgtccttcgacataggctcagccgccgccgcttccacctccggcagcttttacggcggtcccatcggctccggctcctccgccctccccggaggcaccggcttcgaagacgaggagcctcttctcgacgagctcggtattcaccccgatcaaatctggcggaagaccaagtccattctccaccccttccgggtcaacccggacctccacaaggagtccgacatgtccggccccttcctcctctacgtctccctctgcctctttcagttactcgccggcaagatccaattcggcgtaatactcggctggatcatcgtctccttcttcttcctgtacgtcgtcgtcaacatgttggcgggccgtaacggcaacctagagctgcacaggtgcgccagcgtcgttggctactctctgttgccggtggtgattttatcggccaccatgctctttgtgcctcaaggcgggagtttcgtgttcgcagtggctgccgtgtttgttttatgggccacaagggtttgcaccggcctcatggttgcgctcgtcgacggcggtgatgagcatcgcggcctcattgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

192

Amino Acids

20.48

Weight (kDa)

5.4

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36300 AT3G52760
fragaria_vesca	FvH4_6g27040
malus_domestica	MD12G1023700.v1.1 MD14G1020900.v1.1
prunus_persica	Prupe.7G112800_v2.0.a1
pyrus_communis	pycom12g02210
rosa_chinensis	RchiOBHm_Chr3g0472991 RchiOBHm_Chr3g0491231
rosa_laevigata	RLG00000022852 RLG00000024039
rosa_multiflora	Rmu_co8300385.1_g000001 Rmu_sc0010986.1_g000006 Rmu_sc0014162.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393080
rosa_rugosa	Rorug03G0130500 Rorug03G0248500
rosa_samantha	Rh3AG297600 Rh3BG208600 Rh3BG333900 Rh3CG330600 Rh3DG331600
rosa_wichuraiana	Rw3G016090 Rw3G026220 Rw3G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	1 cut(s)	564
AclWI	GGATC	2 cut(s)	277, 317
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	190, 211, 461
AflIII	ACRYGT	2 cut(s)	222, 348
AluBI	AGCT	3 cut(s)	48, 133, 379
AluI	AGCT	3 cut(s)	48, 133, 379
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	253, 322
AlwI	GGATC	2 cut(s)	277, 317
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	6 cut(s)	229, 358, 435, 504, 523, 565
ApeKI	GCWGC	3 cut(s)	45, 379, 485
AspLEI	GCGC	2 cut(s)	392, 538
AspS9I	GGNCC	5 cut(s)	59, 202, 230, 358, 504
AsuC2I	CCSGG	3 cut(s)	90, 191, 200
AsuHPI	GGTGA	3 cut(s)	134, 436, 563
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	59, 202
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	114, 170
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	57, 366, 472
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	5 cut(s)	70, 345, 382, 473, 562
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcnI	CCSGG	3 cut(s)	90, 191, 200
BcoDI	GTCTC	2 cut(s)	253, 322
BfaI	CTAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	366
BisI	GCNGC	7 cut(s)	24, 27, 30, 46, 380, 486, 565
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	7 cut(s)	25, 28, 31, 47, 381, 487, 566
Bme1390I	CCNGG	3 cut(s)	90, 191, 200
Bme18I	GGWCC	2 cut(s)	59, 202
BmgT120I	GGNCC	5 cut(s)	59, 202, 230, 358, 504
BmiI	GGNNCC	6 cut(s)	61, 70, 76, 97, 117, 232
BmrFI	CCNGG	3 cut(s)	90, 191, 200
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	2 cut(s)	114, 170
Bpu1102I	GCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	3 cut(s)	90, 191, 200
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 211, 461
Bse118I	RCCGGY	4 cut(s)	98, 275, 418, 521
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	190, 211, 461
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	3 cut(s)	67, 128, 230
BseXI	GCAGC	3 cut(s)	57, 366, 472
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	6 cut(s)	231, 360, 437, 506, 525, 567
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	190, 211, 461
BsmAI	GTCTC	2 cut(s)	253, 322
BsmBI	CGTCTC	2 cut(s)	253, 322
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	6 cut(s)	231, 360, 437, 506, 525, 567
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	148, 282, 309
Bsp1720I	GCTNAGC	1 cut(s)	19
BspANI	GGCC	6 cut(s)	231, 360, 437, 506, 525, 567
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	6 cut(s)	61, 70, 76, 97, 117, 232
BspPI	GGATC	2 cut(s)	277, 317
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	4 cut(s)	98, 275, 418, 521
BssAI	RCCGGY	4 cut(s)	98, 275, 418, 521
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	148, 282, 309
Bst6I	CTCTTC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	277, 358, 394
BstDEI	CTNAG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	392, 538
BstKTI	GATC	3 cut(s)	151, 285, 312
BstMAI	GTCTC	2 cut(s)	253, 322
BstMBI	GATC	3 cut(s)	148, 282, 309
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 54, 366, 402, 451, 485
BstNSI	RCATGY	2 cut(s)	226, 352
BstSCI	CCNGG	3 cut(s)	88, 189, 198
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	57, 366, 472
BstV2I	GAAGAC	2 cut(s)	114, 170
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	6 cut(s)	231, 360, 437, 506, 525, 567
BtgZI	GCGATG	1 cut(s)	545
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	277, 358, 394
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	2 cut(s)	392, 538
Cfr10I	RCCGGY	4 cut(s)	98, 275, 418, 521
Cfr13I	GGNCC	5 cut(s)	59, 202, 230, 358, 504
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	4 cut(s)	223, 349, 442, 529
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	150, 284, 311
DpnII	GATC	3 cut(s)	148, 282, 309
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	2 cut(s)	70, 175
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	59, 202
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	135
Esp3I	CGTCTC	2 cut(s)	253, 322
FaeI	CATG	4 cut(s)	226, 352, 445, 532
FaiI	YATR	6 cut(s)	14, 224, 350, 443, 502, 530
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	4 cut(s)	222, 348, 441, 528
FauI	CCCGC	2 cut(s)	349, 455
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	7 cut(s)	24, 27, 30, 46, 380, 486, 565
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	7 cut(s)	24, 27, 30, 46, 380, 486, 565
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	391, 537
GluI	GCNGC	7 cut(s)	24, 27, 30, 46, 380, 486, 565
HaeIII	GGCC	6 cut(s)	231, 360, 437, 506, 525, 567
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	2 cut(s)	392, 538
Hin1II	CATG	4 cut(s)	226, 352, 445, 532
Hin6I	GCGC	2 cut(s)	390, 536
HinP1I	GCGC	2 cut(s)	390, 536
HincII	GTYRAC	3 cut(s)	196, 346, 544
HindII	GTYRAC	3 cut(s)	196, 346, 544
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	3 cut(s)	134, 436, 563
Hpy166II	GTNNAC	3 cut(s)	196, 346, 544
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	3 cut(s)	196, 346, 544
Hpy99I	CGWCG	6 cut(s)	131, 341, 344, 401, 545, 548
HpyAV	CCTTC	4 cut(s)	16, 196, 244, 331
HpyCH4IV	ACGT	2 cut(s)	246, 336
HpyCH4V	TGCA	2 cut(s)	382, 519
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 54, 366, 402, 451, 485
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	2 cut(s)	246, 336
Hsp92II	CATG	4 cut(s)	226, 352, 445, 532
HspAI	GCGC	2 cut(s)	390, 536
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	148, 282, 309
LmnI	GCTCC	3 cut(s)	74, 80, 115
Lsp1109I	GCAGC	3 cut(s)	57, 366, 472
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	246, 336
MaeIII	GTNAC	2 cut(s)	267, 362
MalI	GATC	3 cut(s)	150, 284, 311
MboI	GATC	3 cut(s)	148, 282, 309
MboII	GAAGA	5 cut(s)	113, 119, 175, 316, 319
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	275
MspR9I	CCNGG	3 cut(s)	90, 191, 200
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	6 cut(s)	29, 54, 366, 402, 451, 485
NaeI	GCCGGC	1 cut(s)	277
NciI	CCSGG	3 cut(s)	90, 191, 200
NdeII	GATC	3 cut(s)	148, 282, 309
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	226, 352, 445, 532
NlaIV	GGNNCC	6 cut(s)	61, 70, 76, 97, 117, 232
NmeAIII	GCCGAG	1 cut(s)	282
NspI	RCATGY	2 cut(s)	226, 352
NspV	TTCGAA	1 cut(s)	105
PciI	ACATGT	2 cut(s)	222, 348
PdiI	GCCGGC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	169
PkrI	GCNGC	7 cut(s)	25, 28, 31, 47, 381, 487, 566
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PscI	ACATGT	2 cut(s)	222, 348
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	6 cut(s)	61, 70, 76, 97, 117, 232
PspPI	GGNCC	5 cut(s)	59, 202, 230, 358, 504
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	282
PsyI	GACNNNGTC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	542
SatI	GCNGC	7 cut(s)	24, 27, 30, 46, 380, 486, 565
Sau3AI	GATC	3 cut(s)	148, 282, 309
Sau96I	GGNCC	5 cut(s)	59, 202, 230, 358, 504
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	90, 191, 200
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	41, 50, 135, 207, 249, 339, 375, 381, 389
SfaNI	GCATC	1 cut(s)	568
SfuI	TTCGAA	1 cut(s)	105
SgrDI	CGTCGACG	1 cut(s)	542
SinI	GGWCC	2 cut(s)	59, 202
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	88, 189, 198
TaiI	ACGT	2 cut(s)	249, 339
TaqI	TCGA	4 cut(s)	9, 105, 126, 543
TasI	AATT	1 cut(s)	287
TauI	GCSGC	4 cut(s)	26, 29, 32, 567
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	3 cut(s)	45, 379, 485
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	59, 202
XagI	CCTNNNNNAGG	1 cut(s)	209
XceI	RCATGY	2 cut(s)	226, 352
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.