pycom12g02210

Protein YIPF5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0007103
Physical Location & Seq
Forward (+)
1928656 .. 1931445
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02210.1

Sequence Viewer

Length: 1017 bp
ATGACGAAGGATTTCGCCGTCCCCCCTGTGGTATTCCCCTCCGGCGGCAACCCTAGCGCCGTCGGAGCCAACAACATCCAGCAACGACGCGTCGCAACGGCGCCGTTTCAGCCCCCGCGCACCTCAACCTCCTCCATCCCTTTCATGTCCTTCGACATCGGTTCCGCCGCCGCCTCGTCCTCCTCCTCCTCCTCCTCCCTCTTCGGCGGCCCGATCGGATCCTCCTCCGTCCCTGGCGGCTCCGCCTCTTTCGAGGACGAGGAGCCCCTCCTCGACGAGCTCGGTATCCACCCTGACCAAATCTGGCGAAAAACCAAGTCCATCCTCAACCCGTTCCGGTCCAACCCGGCGGTCCACAAGGACTCGGACCTCTCCGGGCCTATCCTCCTCTACATGTCACTCTGCCTCTTCCAACTCCTCGCCGGAAAAATTCAGTTCGGTGTCATACTCGGGTGGATCGTCGTTTCATCAATCTTCCTCTACATCGTCTTCAACATGCTCGCCGGGCGTAACGGCAATCTCGACCTGCACAGATGTACGTCCGTGGTGGGGTATTGTATGCTGCCCGTGGTGATCTTATCGGCTGCCTCTCTCTTCGTCCCCCAAGGCGGCACCTTCAGGATCGCCGTGGCTGCCGTCTTCGTCTTGTGGGCTACTAGGGTTTGCACAGGGCTCATGGTTGCGCTTGCCGACGGTGGCGATGAGCATCGCGGCTTGATAGCATACCGTATTGCGTGTGTGATGAAATCGGATTATTTGGTATTTTGTTGCGGAAAATGGATTATTTTTGTATCGTATGATGTGGCGAGTACTCGTTTATTCGACGATATAATGAAAGTCTCTAGGACTAGCCTTATGCGTCACGCATACGTGGGATTTGACTTTGGAAGATGTATTTGCTTTCAAAGACCAACCTCGACGTTCTTTTATTGTCGTTGTAAATTTGTTGAAGCGCGTTCTACTTCCCACCTGAACTGCAACCTCACCACCAAACATCTGAAATGTGCACATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

339

Amino Acids

36.77

Weight (kDa)

8.89

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 109 - 230 1.9e-08 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 100, 611
AccII CGCG 4 cut(s) 90, 118, 711, 955
AclWI GGATC 4 cut(s) 213, 226, 464, 629
AcsI RAATTY 2 cut(s) 429, 941
AcuI CTGAAG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 2 cut(s) 538, 811
AfiI CCNNNNNNNGG 4 cut(s) 28, 44, 549, 608
AflIII ACRYGT 2 cut(s) 88, 393
AgsI TTSAA 3 cut(s) 493, 905, 950
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 2 cut(s) 282, 1009
Alw26I GTCTC 1 cut(s) 844
Alw44I GTGCAC 1 cut(s) 1005
AlwI GGATC 4 cut(s) 213, 226, 464, 629
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 2 cut(s) 208, 377
ApaLI GTGCAC 1 cut(s) 1005
ApeKI GCWGC 3 cut(s) 562, 584, 632
ApoI RAATTY 2 cut(s) 429, 941
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 5 cut(s) 59, 103, 120, 685, 955
AspS9I GGNCC 5 cut(s) 209, 339, 352, 367, 377
AsuC2I CCSGG 3 cut(s) 347, 376, 505
AsuHPI GGTGA 2 cut(s) 583, 976
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 3 cut(s) 339, 352, 367
BaeGI GKGCMC 1 cut(s) 1009
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 2 cut(s) 100, 611
BanII GRGCYC 3 cut(s) 267, 282, 675
BbsI GAAGAC 2 cut(s) 481, 631
Bbv12I GWGCWC 2 cut(s) 282, 1009
BbvI GCAGC 3 cut(s) 549, 571, 619
BccI CCATC 2 cut(s) 143, 329
BceAI ACGGC 7 cut(s) 2, 44, 88, 114, 529, 611, 620
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 296
BcnI CCSGG 3 cut(s) 347, 376, 505
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 4 cut(s) 54, 657, 843, 849
BfoI RGCGCY 2 cut(s) 60, 104
BfuAI ACCTGC 1 cut(s) 534
BfuI GTATCC 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 4 cut(s) 234, 347, 376, 505
Bme18I GGWCC 3 cut(s) 339, 352, 367
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 5 cut(s) 209, 339, 352, 367, 377
BmiI GGNNCC 7 cut(s) 67, 102, 163, 220, 241, 264, 613
BmrFI CCNGG 4 cut(s) 234, 347, 376, 505
BmsI GCATC 1 cut(s) 715
BpiI GAAGAC 2 cut(s) 481, 631
BpuMI CCSGG 3 cut(s) 347, 376, 505
BsaAI YACGTR 1 cut(s) 871
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 232, 543, 567, 604, 627
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 44, 549, 608
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 232, 543, 567, 604, 627
BseGI GGATG 3 cut(s) 75, 135, 321
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 28, 44, 549, 608
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 3 cut(s) 549, 571, 619
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 4 cut(s) 90, 118, 711, 955
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 210, 379
BshNI GGYRCC 2 cut(s) 100, 611
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 282, 1009
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 6 cut(s) 42, 337, 347, 375, 423, 504
BslFI GGGAC 3 cut(s) 5, 215, 584
BslI CCNNNNNNNGG 4 cut(s) 28, 44, 549, 608
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 3 cut(s) 5, 215, 584
BsnI GGCC 2 cut(s) 210, 379
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 4 cut(s) 267, 282, 675, 1009
Bsp143I GATC 5 cut(s) 213, 218, 456, 573, 621
BspANI GGCC 2 cut(s) 210, 379
BspFNI CGCG 4 cut(s) 90, 118, 711, 955
BspLI GGNNCC 7 cut(s) 67, 102, 163, 220, 241, 264, 613
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 213, 226, 464, 629
BspT107I GGYRCC 2 cut(s) 100, 611
BssECI CCNNGG 5 cut(s) 232, 543, 567, 604, 627
BssMI GATC 5 cut(s) 213, 218, 456, 573, 621
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 695, 728
Bst6I CTCTTC 3 cut(s) 206, 413, 599
BstACI GRCGYC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 501, 687
BstDSI CCRYGG 3 cut(s) 543, 567, 627
BstF5I GGATG 3 cut(s) 75, 135, 321
BstFNI CGCG 4 cut(s) 90, 118, 711, 955
BstH2I RGCGCY 2 cut(s) 60, 104
BstHHI GCGC 5 cut(s) 59, 103, 120, 685, 955
BstKTI GATC 5 cut(s) 216, 221, 459, 576, 624
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 5 cut(s) 213, 218, 456, 573, 621
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 505, 632
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 397, 499
BstSCI CCNGG 4 cut(s) 232, 345, 374, 503
BstSLI GKGCMC 1 cut(s) 1009
BstUI CGCG 4 cut(s) 90, 118, 711, 955
BstV1I GCAGC 3 cut(s) 549, 571, 619
BstV2I GAAGAC 2 cut(s) 481, 631
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 210, 379
BtgI CCRYGG 3 cut(s) 543, 567, 627
BtgZI GCGATG 2 cut(s) 692, 714
BtsCI GGATG 3 cut(s) 75, 135, 321
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 2 cut(s) 501, 687
CfoI GCGC 5 cut(s) 59, 103, 120, 685, 955
Cfr13I GGNCC 5 cut(s) 209, 339, 352, 367, 377
CseI GACGC 3 cut(s) 79, 96, 848
Csp6I GTAC 2 cut(s) 537, 810
CviAII CATG 4 cut(s) 145, 394, 496, 676
CviQI GTAC 2 cut(s) 537, 810
DinI GGCGCC 1 cut(s) 102
DpnI GATC 5 cut(s) 215, 220, 458, 575, 623
DpnII GATC 5 cut(s) 213, 218, 456, 573, 621
Eam1104I CTCTTC 3 cut(s) 206, 413, 599
EarI CTCTTC 3 cut(s) 206, 413, 599
EciI GGCGGA 2 cut(s) 154, 232
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 604
Eco24I GRGCYC 3 cut(s) 267, 282, 675
Eco47I GGWCC 3 cut(s) 339, 352, 367
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 604
EcoT38I GRGCYC 3 cut(s) 267, 282, 675
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 4 cut(s) 148, 397, 499, 679
FaqI GGGAC 3 cut(s) 5, 215, 584
FatI CATG 4 cut(s) 144, 393, 495, 675
FauI CCCGC 1 cut(s) 123
FokI GGATG 3 cut(s) 62, 122, 308
FriOI GRGCYC 3 cut(s) 267, 282, 675
FspBI CTAG 4 cut(s) 54, 657, 843, 849
GlaI GCGC 5 cut(s) 58, 102, 119, 684, 954
HaeII RGCGCY 2 cut(s) 60, 104
HaeIII GGCC 2 cut(s) 210, 379
HapII CCGG 6 cut(s) 42, 337, 347, 375, 423, 504
HgaI GACGC 3 cut(s) 79, 96, 848
HhaI GCGC 5 cut(s) 59, 103, 120, 685, 955
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 148, 397, 499, 679
Hin6I GCGC 5 cut(s) 57, 101, 118, 683, 953
HinP1I GCGC 5 cut(s) 57, 101, 118, 683, 953
HinfI GANTC 1 cut(s) 362
HpaII CCGG 6 cut(s) 42, 337, 347, 375, 423, 504
HphI GGTGA 2 cut(s) 583, 976
Hpy166II GTNNAC 2 cut(s) 355, 1007
Hpy188I TCNGA 5 cut(s) 65, 218, 367, 751, 999
Hpy188III TCNNGA 2 cut(s) 521, 619
Hpy8I GTNNAC 2 cut(s) 355, 1007
Hpy99I CGWCG 8 cut(s) 65, 90, 95, 278, 464, 695, 827, 922
HpyAV CCTTC 2 cut(s) 160, 625
HpyCH4III ACNGT 2 cut(s) 695, 728
HpyCH4IV ACGT 3 cut(s) 539, 870, 920
HpyCH4V TGCA 4 cut(s) 529, 666, 978, 1007
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 505, 632
HpySE526I ACGT 3 cut(s) 539, 870, 920
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 148, 397, 499, 679
HspAI GCGC 5 cut(s) 57, 101, 118, 683, 953
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 5 cut(s) 213, 218, 456, 573, 621
LmnI GCTCC 3 cut(s) 65, 245, 262
Lsp1109I GCAGC 3 cut(s) 549, 571, 619
LweI GCATC 1 cut(s) 715
MaeI CTAG 4 cut(s) 54, 657, 843, 849
MaeII ACGT 3 cut(s) 539, 870, 920
MaeIII GTNAC 3 cut(s) 396, 509, 860
MalI GATC 5 cut(s) 215, 220, 458, 575, 623
MboI GATC 5 cut(s) 213, 218, 456, 573, 621
MboII GAAGA 7 cut(s) 193, 400, 466, 481, 586, 631, 900
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 4 cut(s) 267, 282, 675, 1009
MluCI AATT 2 cut(s) 429, 941
MluI ACGCGT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 3 cut(s) 43, 366, 436
MroXI GAANNNNTTC 1 cut(s) 11
MspI CCGG 6 cut(s) 42, 337, 347, 375, 423, 504
MspR9I CCNGG 4 cut(s) 234, 347, 376, 505
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 4 cut(s) 90, 118, 711, 955
MwoI GCNNNNNNNGC 5 cut(s) 54, 65, 109, 505, 632
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 3 cut(s) 347, 376, 505
NdeII GATC 5 cut(s) 213, 218, 456, 573, 621
NlaIII CATG 4 cut(s) 148, 397, 499, 679
NlaIV GGNNCC 7 cut(s) 67, 102, 163, 220, 241, 264, 613
NmuCI GTSAC 2 cut(s) 396, 860
NspI RCATGY 2 cut(s) 397, 499
PciI ACATGT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 519
PdmI GAANNNNTTC 1 cut(s) 11
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 1 cut(s) 356
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 871
PscI ACATGT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 7 cut(s) 67, 102, 163, 220, 241, 264, 613
PspPI GGNCC 5 cut(s) 209, 339, 352, 367, 377
PsuI RGATCY 1 cut(s) 218
PvuI CGATCG 1 cut(s) 216
RsaI GTAC 2 cut(s) 538, 811
RsaNI GTAC 2 cut(s) 537, 810
SacI GAGCTC 1 cut(s) 282
Sau3AI GATC 5 cut(s) 213, 218, 456, 573, 621
Sau96I GGNCC 5 cut(s) 209, 339, 352, 367, 377
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 4 cut(s) 234, 347, 376, 505
SduI GDGCHC 4 cut(s) 267, 282, 675, 1009
SfaNI GCATC 1 cut(s) 715
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 3 cut(s) 339, 352, 367
Sse9I AATT 2 cut(s) 429, 941
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 4 cut(s) 54, 657, 843, 849
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 232, 345, 374, 503
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 695, 728
TaiI ACGT 3 cut(s) 542, 873, 923
TaqI TCGA 6 cut(s) 153, 252, 273, 522, 822, 917
TasI AATT 2 cut(s) 429, 941
TatI WGTACW 1 cut(s) 809
TauI GCSGC 7 cut(s) 48, 170, 173, 210, 240, 612, 714
TseFI GTSAC 2 cut(s) 396, 860
TseI GCWGC 3 cut(s) 562, 584, 632
Tsp45I GTSAC 2 cut(s) 396, 860
TspDTI ATGAA 4 cut(s) 133, 456, 758, 848
TspGWI ACGGA 2 cut(s) 217, 532
VneI GTGCAC 1 cut(s) 1005
VpaK11BI GGWCC 3 cut(s) 339, 352, 367
XapI RAATTY 2 cut(s) 429, 941
XceI RCATGY 2 cut(s) 397, 499
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 4 cut(s) 54, 657, 843, 849
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.