AT2G38870

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008933
Physical Location & Seq
Reverse (-)
16236257 .. 16237280
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38870.1

Sequence Viewer

Length: 213 bp
ATGTCGACCGAATGTCCTAGGAAGAACTCGTGGCCGGAGCTTACGGGAACAAATGGTGACTATGCGGCCGTGGTGATAGAGAGAGAGAACCCCACCGTCAATGCTGCCGTGATTTTGGATGGGAGTCCGGTGACCGCAGACTTCAGGTGCGACCGGGTCAGAGTTTTTGTTGATGGAAACCGTATCGTCGTCAAAACCCCCAAATCCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

70

Amino Acids

7.62

Weight (kDa)

6.14

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 4.2e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 65, 135
AcoI YGGCCR 2 cut(s) 32, 66
AcuI CTGAAG 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 206
AhdI GACNNNNNGTC 1 cut(s) 12
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 2 cut(s) 32, 66
ApeKI GCWGC 1 cut(s) 104
AspA2I CCTAGG 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 68, 85, 142
AvrII CCTAGG 1 cut(s) 17
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 113, 167
BceAI ACGGC 2 cut(s) 53, 92
BcnI CCSGG 1 cut(s) 155
BfaI CTAG 2 cut(s) 18, 211
BisI GCNGC 2 cut(s) 66, 105
BlnI CCTAGG 1 cut(s) 17
BlsI GCNGC 2 cut(s) 67, 106
Bme1390I CCNGG 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 17, 69
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 17, 69
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 91
Bsh1285I CGRYCG 3 cut(s) 9, 69, 154
BshFI GGCC 2 cut(s) 34, 68
BsiEI CGRYCG 3 cut(s) 9, 69, 154
BsiSI CCGG 4 cut(s) 35, 128, 154, 207
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 2 cut(s) 34, 68
BspACI CCGC 2 cut(s) 65, 135
BspANI GGCC 2 cut(s) 34, 68
BssECI CCNNGG 2 cut(s) 17, 69
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 97, 182
BstDSI CCRYGG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 124
BstMCI CGRYCG 3 cut(s) 9, 69, 154
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 91
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 34, 68
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 124
CviJI RGCY 4 cut(s) 34, 40, 68, 210
CviKI_1 RGCY 4 cut(s) 34, 40, 68, 210
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 2 cut(s) 32, 66
EagI CGGCCG 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 17
Eco52I CGGCCG 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaiI YATR 1 cut(s) 63
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 66, 105
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 66, 105
FspBI CTAG 2 cut(s) 18, 211
GluI GCNGC 2 cut(s) 66, 105
HaeIII GGCC 2 cut(s) 34, 68
HapII CCGG 4 cut(s) 35, 128, 154, 207
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 124
HpaII CCGG 4 cut(s) 35, 128, 154, 207
HphI GGTGA 3 cut(s) 68, 85, 142
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 191
HpyCH4III ACNGT 2 cut(s) 97, 182
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 48, 130, 141, 167
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 2 cut(s) 18, 211
MaeIII GTNAC 2 cut(s) 56, 130
MboII GAAGA 1 cut(s) 34
MlyI GAGTC 1 cut(s) 133
MspI CCGG 4 cut(s) 35, 128, 154, 207
MspR9I CCNGG 1 cut(s) 155
NciI CCSGG 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 56, 130
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 67, 106
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 155
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 66, 105
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 155
SetI ASST 2 cut(s) 42, 149
SsiI CCGC 2 cut(s) 65, 135
SspMI CTAG 2 cut(s) 18, 211
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 97, 182
TaqI TCGA 1 cut(s) 5
TaqII GACCGA 1 cut(s) 23
TauI GCSGC 1 cut(s) 68
TseFI GTSAC 2 cut(s) 56, 130
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 2 cut(s) 56, 130
Tth111I GACNNNGTC 1 cut(s) 155
XmaJI CCTAGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 18, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.