AT2G38900

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008933
Physical Location & Seq
Forward (+)
16243215 .. 16244175
961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38900.1

Sequence Viewer

Length: 222 bp
ATGGCAACCGAGTGGTGTAGTTATATTGGGAAGAACTCATGGCCGGAGCTTTTAGGAACAAATGGAGACTATGCGGCTTCGGTGATAAAAGGAGAGAACTCGAGCCTCAACGTTGTCGTGGTTTCGGATGGAAATTATGTGACTGAAGACCTCAGTTGCTACCGCGTTAGGGTTTGGGTTGACGAAATCCGTATCGTTGTCAGAAACCCAACCGCCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

73

Amino Acids

8.07

Weight (kDa)

4.61

Isoelectric Point (pI)

15.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 11 - 73 2.5e-22 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 74, 163, 213
AclI AACGTT 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 169, 215
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 153
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 215
Bse118I RCCGGY 1 cut(s) 215
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 169, 215
BseMII CTCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 44, 216
BslI CCNNNNNNNGG 2 cut(s) 169, 215
BsmAI GTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 100
BspACI CCGC 3 cut(s) 74, 163, 213
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 60
BstUI CGCG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 215
CviAII CATG 1 cut(s) 39
CviJI RGCY 5 cut(s) 43, 49, 77, 105, 219
CviKI_1 RGCY 5 cut(s) 43, 49, 77, 105, 219
DdeI CTNAG 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 100
FaeI CATG 1 cut(s) 42
FaiI YATR 4 cut(s) 24, 40, 72, 138
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 220
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 44, 216
Hin1II CATG 1 cut(s) 42
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 44, 216
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 127, 203
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 42
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 1 cut(s) 57
MaeI CTAG 1 cut(s) 220
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 2 cut(s) 43, 158
MluCI AATT 1 cut(s) 133
MnlI CCTC 2 cut(s) 116, 161
MroNI GCCGGC 1 cut(s) 215
MspI CCGG 2 cut(s) 44, 216
MvnI CGCG 1 cut(s) 165
NaeI GCCGGC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 100
SatI GCNGC 1 cut(s) 75
SetI ASST 3 cut(s) 51, 114, 153
Sfr274I CTCGAG 1 cut(s) 100
SgeI CNNG 7 cut(s) 22, 51, 56, 112, 114, 130, 176
SlaI CTCGAG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 133
SsiI CCGC 3 cut(s) 74, 163, 213
SspMI CTAG 1 cut(s) 220
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 133
TauI GCSGC 1 cut(s) 77
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 100
XspI CTAG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.