Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016732.1

Orthogroup ID

OG0008933

Physical Location & Seq

Genomic Coordinates Forward (+)

8278 .. 11280

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016732.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggatgacgtccatcatggtgatggtgccacaggtgatgctacaatcaccaactttgcttcttatagcgtttcagacgctcaggaggagataagaacacggatgttcaacaagaacaataggaattgtcgtggtttgtccccactatgtctcatcttgatcctcgataaagtaatgagatcacacatatctattgcaaacgtgcctgcaagaatggatgtccctaagggaggacgtagtgttgccctacacggagaaacaaagagttcgtggccggagctagttggtaccaaaggagaggaagcagcagccaccataatcaaagaaaacccttctgtcaaagcccatacagtaaaagaaggatcttttgtcaccttcgatatgcgtcgcgacagagttcgggtctggattgatgagcgtgggattgtcactaaggcgcctaagattggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

potato_inhibit

Protein Analysis

150

Amino Acids

16.5

Weight (kDa)

9.0

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38870 AT2G38900 AT2G38900
fragaria_vesca	FvH4_4g02940 FvH4_4g02940
malus_domestica	MD05G1203000.v1.1 MD13G1208800.v1.1
prunus_persica	Prupe.1G032900_v2.0.a1 Prupe.8G228900_v2.0.a1 Prupe.8G229000_v2.0.a1 Prupe.8G229400_v2.0.a1
pyrus_communis	pycom10g16380
rosa_chinensis	RchiOBHm_Chr4g0391001
rosa_multiflora	Rmu_sc0001824.1_g000013 Rmu_sc0016732.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336840
rosa_rugosa	Rorug03G0332600
rosa_samantha	Rh4AG034100 Rh4BG028600 Rh4CG037500 Rh4DG031400
rosa_wichuraiana	Rw4G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	3 cut(s)	26, 287, 436
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	2 cut(s)	154, 370
AcoI	YGGCCR	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	9, 437
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	230, 446
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	154, 370
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	305, 308
Asp718I	GGTACC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	32, 40, 47, 364
AxyI	CCTNAGG	1 cut(s)	225
BanI	GGYRCC	3 cut(s)	26, 287, 436
BbvI	GCAGC	2 cut(s)	317, 320
BccI	CCATC	2 cut(s)	17, 21
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	2 cut(s)	306, 309
BlsI	GCNGC	2 cut(s)	307, 310
BmiI	GGNNCC	3 cut(s)	28, 289, 438
BmsI	GCATC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	81
BsaHI	GRCGYC	2 cut(s)	9, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 446
Bse21I	CCTNAGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	10, 108, 223
BseLI	CCNNNNNNNGG	2 cut(s)	230, 446
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	317, 320
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	3 cut(s)	26, 287, 436
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	124, 206
BslI	CCNNNNNNNGG	2 cut(s)	230, 446
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	124, 206
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	159, 179, 362
Bsp68I	TCGCGA	1 cut(s)	390
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	28, 289, 438
BspPI	GGATC	2 cut(s)	154, 370
BspT107I	GGYRCC	3 cut(s)	26, 287, 436
BssMI	GATC	3 cut(s)	159, 179, 362
BssNI	GRCGYC	2 cut(s)	9, 437
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	9, 437
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	81, 225, 432, 441
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	10, 108, 223
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	3 cut(s)	162, 182, 365
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	159, 179, 362
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	317, 320
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	10, 108, 223
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	439
CseI	GACGC	2 cut(s)	86, 374
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	4 cut(s)	274, 280, 311, 344
CviKI_1	RGCY	4 cut(s)	274, 280, 311, 344
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	4 cut(s)	81, 225, 432, 441
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	3 cut(s)	161, 181, 364
DpnII	GATC	3 cut(s)	159, 179, 362
EaeI	YGGCCR	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
FaeI	CATG	1 cut(s)	20
FaiI	YATR	7 cut(s)	18, 66, 148, 188, 317, 348, 383
FaqI	GGGAC	2 cut(s)	124, 206
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	306, 309
FokI	GGATG	3 cut(s)	17, 115, 230
Fsp4HI	GCNGC	2 cut(s)	306, 309
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	306, 309
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	2 cut(s)	86, 374
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	2 cut(s)	9, 437
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	4 cut(s)	32, 40, 47, 364
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	4 cut(s)	83, 157, 389, 406
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	3 cut(s)	342, 353, 385
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	9, 201, 235
HpyCH4V	TGCA	2 cut(s)	197, 209
HpyF3I	CTNAG	4 cut(s)	81, 225, 432, 441
HpySE526I	ACGT	3 cut(s)	9, 201, 235
Hsp92I	GRCGYC	2 cut(s)	9, 437
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	1 cut(s)	437
KasI	GGCGCC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	159, 179, 362
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	18, 68, 219, 288, 391
Lsp1109I	GCAGC	2 cut(s)	317, 320
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	3 cut(s)	9, 201, 235
MaeIII	GTNAC	2 cut(s)	370, 427
MalI	GATC	3 cut(s)	161, 181, 364
MboI	GATC	3 cut(s)	159, 179, 362
MflI	RGATCY	1 cut(s)	362
MluCI	AATT	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	437
MnlI	CCTC	4 cut(s)	79, 173, 224, 292
MslI	CAYNNNNRTG	2 cut(s)	18, 21
MspI	CCGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	390
NarI	GGCGCC	1 cut(s)	437
NdeII	GATC	3 cut(s)	159, 179, 362
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	3 cut(s)	28, 289, 438
NmuCI	GTSAC	2 cut(s)	370, 427
NruI	TCGCGA	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	307, 310
PluTI	GGCGCC	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	28, 289, 438
PsuI	RGATCY	1 cut(s)	362
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	18, 21
SatI	GCNGC	2 cut(s)	306, 309
Sau3AI	GATC	3 cut(s)	159, 179, 362
SetI	ASST	6 cut(s)	12, 37, 204, 238, 282, 377
SfaNI	GCATC	1 cut(s)	28
SfoI	GGCGCC	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	18, 21
Sse9I	AATT	1 cut(s)	124
SspDI	GGCGCC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	3 cut(s)	12, 204, 238
TaqI	TCGA	2 cut(s)	165, 378
TasI	AATT	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	370, 427
TseI	GCWGC	2 cut(s)	305, 308
Tsp45I	GTSAC	2 cut(s)	370, 427
TspGWI	ACGGA	2 cut(s)	115, 267
XagI	CCTNNNNNAGG	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.