MD13G1208800.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008933
Physical Location & Seq
Forward (+)
19217181 .. 19217782
602 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1208800.v1.1.491

Sequence Viewer

Length: 222 bp
ATGGCAAGTAGCACGACCACTGTTGAGAAGAAGTTGTCATGGCCAGAGCTAGTGGGCACTAAAGGAGAGGAGGCAGTAGCCGCAATCTTGAAAGAAAATCCATCGCTGAAAGCCCACACATTACCTGAAGGATCCTTTGTCACCTTTGATCTACGCCATGACAGGGTCCGCGTCTATACTAACGAGCAAGGCGTTGTTACTGCAGCGCCTAAAATAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

74

Amino Acids

7.91

Weight (kDa)

6.72

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 11 - 73 3.4e-23 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 81, 169
AclWI GGATC 2 cut(s) 126, 139
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 163, 215
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AlwI GGATC 2 cut(s) 126, 139
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 43
BamHI GGATCC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 109
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 2 cut(s) 81, 204
BlsI GCNGC 2 cut(s) 82, 205
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 133, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 215
BseLI CCNNNNNNNGG 2 cut(s) 163, 215
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 163, 215
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 131, 148
BspACI CCGC 2 cut(s) 81, 169
BspANI GGCC 1 cut(s) 43
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 133, 167
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 2 cut(s) 126, 139
BssMI GATC 2 cut(s) 131, 148
Bst4CI ACNGT 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 134, 151
BstMBI GATC 2 cut(s) 131, 148
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 1 cut(s) 160
CviAII CATG 2 cut(s) 39, 158
CviJI RGCY 5 cut(s) 43, 49, 80, 113, 219
CviKI_1 RGCY 5 cut(s) 43, 49, 80, 113, 219
DpnI GATC 2 cut(s) 133, 150
DpnII GATC 2 cut(s) 131, 148
EaeI YGGCCR 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 213
FaeI CATG 2 cut(s) 42, 161
FaiI YATR 3 cut(s) 40, 159, 177
FatI CATG 2 cut(s) 38, 157
Fnu4HI GCNGC 2 cut(s) 81, 204
Fsp4HI GCNGC 2 cut(s) 81, 204
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 81, 204
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 43
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 42, 161
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HphI GGTGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 42, 161
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 131, 148
LpnPI CCDG 3 cut(s) 57, 138, 148
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 139, 196
MalI GATC 2 cut(s) 133, 150
MboI GATC 2 cut(s) 131, 148
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 43
MluNI TGGCCA 1 cut(s) 43
MnlI CCTC 2 cut(s) 61, 64
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
Msp20I TGGCCA 1 cut(s) 43
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 131, 148
NlaIII CATG 2 cut(s) 42, 161
NlaIV GGNNCC 2 cut(s) 133, 167
NmuCI GTSAC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 82, 205
PspN4I GGNNCC 2 cut(s) 133, 167
PspPI GGNCC 1 cut(s) 166
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 164
SatI GCNGC 2 cut(s) 81, 204
Sau3AI GATC 2 cut(s) 131, 148
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 59
SetI ASST 3 cut(s) 51, 127, 146
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 166
SsiI CCGC 2 cut(s) 81, 169
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 22
TauI GCSGC 1 cut(s) 83
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 139
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 213
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.