Prupe.8G229400_v2.0.a1

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0008933
Physical Location & Seq
Reverse (-)
20516665 .. 20517269
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G229400.1

Sequence Viewer

Length: 273 bp
ATGTATCAGACTGAGAAAACTGAGACTGATGAGAGTGTGAGTGAGGGAGAAAGAAGAATGGCATCTGCATATTGTCCAGGTAAGAGTTCATGGCCAGAGATAGTCGGAGAAGATGGGGAAGTTGCAGCGGCGAAGATAGAGCAAGAGAAGCCTGATGTTCATGCAATCGTCATCCCCGAAGGAACTATAATCACCCAAGAGTTGAGGTGCAACCGGGTCCGGGTCTGGGTTGATGAAAACGGCGTCGTCACCACGGTTCCCCGCGTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

91

Amino Acids

9.96

Weight (kDa)

4.63

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AciI CCGC 2 cut(s) 128, 262
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 3 cut(s) 220, 226, 266
AjnI CCWGG 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 215, 221
AsuHPI GGTGA 2 cut(s) 184, 241
AvaII GGWCC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 94
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 215, 221
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 271
BisI GCNGC 2 cut(s) 126, 129
BlsI GCNGC 2 cut(s) 127, 130
Bme1390I CCNGG 3 cut(s) 78, 215, 221
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 218, 258
BmrFI CCNGG 3 cut(s) 78, 215, 221
BmsI GCATC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 215, 221
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 226, 266
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 220, 226, 266
BseMII CTCAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 214, 220
BslI CCNNNNNNNGG 3 cut(s) 220, 226, 266
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 94
BspACI CCGC 2 cut(s) 128, 262
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 4, 13
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 218, 258
BssECI CCNNGG 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 12, 21
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 76, 213, 219
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 1 cut(s) 232
CviAII CATG 2 cut(s) 90, 161
CviJI RGCY 3 cut(s) 94, 151, 270
CviKI_1 RGCY 3 cut(s) 94, 151, 270
DdeI CTNAG 2 cut(s) 12, 21
EaeI YGGCCR 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 93, 164
FaiI YATR 4 cut(s) 70, 91, 162, 188
FatI CATG 2 cut(s) 89, 160
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 126, 129
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 126, 129
FspBI CTAG 1 cut(s) 271
GluI GCNGC 2 cut(s) 126, 129
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 214, 220
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 93, 164
HpaII CCGG 2 cut(s) 214, 220
HphI GGTGA 2 cut(s) 184, 241
Hpy188I TCNGA 2 cut(s) 9, 107
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 68, 125, 164, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 12, 21
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 93, 164
LpnPI CCDG 7 cut(s) 63, 90, 108, 165, 211, 227, 233
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 3 cut(s) 66, 122, 145
MlsI TGGCCA 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 37, 198
Mox20I TGGCCA 1 cut(s) 94
MscI TGGCCA 1 cut(s) 94
Msp20I TGGCCA 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 2 cut(s) 214, 220
MspR9I CCNGG 3 cut(s) 78, 215, 221
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 215, 221
NlaIII CATG 2 cut(s) 93, 164
NlaIV GGNNCC 2 cut(s) 218, 258
NmuCI GTSAC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PkrI GCNGC 2 cut(s) 127, 130
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 218, 258
PspPI GGNCC 1 cut(s) 217
SatI GCNGC 2 cut(s) 126, 129
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 3 cut(s) 78, 215, 221
SetI ASST 2 cut(s) 82, 209
SfaNI GCATC 1 cut(s) 71
SinI GGWCC 1 cut(s) 217
SsiI CCGC 2 cut(s) 128, 262
SspMI CTAG 1 cut(s) 271
StyD4I CCNGG 3 cut(s) 76, 213, 219
TaaI ACNGT 1 cut(s) 256
TauI GCSGC 1 cut(s) 131
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 3 cut(s) 78, 149, 249
VpaK11BI GGWCC 1 cut(s) 217
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.