AT2G39130

Amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16322956 .. 16327312
4357 bp
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UTR
Exon/CDS
Intron
AT2G39130.1

Sequence Viewer

Length: 1653 bp
ATGAATCACGTACCGTCTGATCAAAGCTTTTACATTGAGAGCGAGGACGAAGACGATAGGAAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTCTGATGATGTTTATGATGAAAACCAAGCTCACATTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGGCAGTCGATTGATCTTTATAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGGAATAATTCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTGGTTTGATAAGAAGACATACTCCGGAATCATTACCTACTGTTACAAAACCTTTGTTAGAAGAACAAGCAGATGAACAAGCACTACCAAAACATAGACTTAGCTCTCAGGGCTTACTCTCTCCTATTCCTTCGAGGAGGGGTTCGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCAATGTCTCGTAATAGCTCATACGGACAAGCTGTACTAAATGGATTGAACGTTCTTTGTGGGGTTGGAATACTTTCAACGCCTTATGCTGCCAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATATGGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTATTGCCTCGACAGTGAGTCTGACCTCGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTCTCGATTGTACTCTACTTGGAGCTATACGCATGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGCCATCTATTTGCATTGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTACGCCATCGGCATTAGAACCCTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTATTCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCTTGTTTCTTGAGCATTGTAAGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTCTTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTTTCCAAGATCGTTGAGAAATTGACCAACTGA

Protein Analysis

550

Amino Acids

60.07

Weight (kDa)

5.48

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 159 - 540 3e-67 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 162, 888
AccIII TCCGGA 1 cut(s) 298
AclI AACGTT 1 cut(s) 513
AclWI GGATC 1 cut(s) 1477
AcoI YGGCCR 2 cut(s) 679, 1107
AcsI RAATTY 1 cut(s) 996
AcuI CTGAAG 1 cut(s) 1581
AcyI GRCGYC 1 cut(s) 1176
AfaI GTAC 8 cut(s) 12, 207, 498, 697, 726, 909, 1159, 1379
AfiI CCNNNNNNNGG 6 cut(s) 162, 215, 221, 677, 888, 1445
AflII CTTAAG 1 cut(s) 811
AflIII ACRYGT 1 cut(s) 1142
AgsI TTSAA 2 cut(s) 511, 540
AhdI GACNNNNNGTC 1 cut(s) 649
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
Alw26I GTCTC 5 cut(s) 216, 456, 474, 721, 1433
AlwI GGATC 1 cut(s) 1477
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 3 cut(s) 164, 679, 1107
ApeKI GCWGC 3 cut(s) 551, 686, 806
ApoI RAATTY 1 cut(s) 996
Asp700I GAANNNNTTC 2 cut(s) 91, 535
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 946
BalI TGGCCA 2 cut(s) 681, 1109
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BbsI GAAGAC 6 cut(s) 57, 264, 295, 593, 780, 1399
BbvI GCAGC 3 cut(s) 538, 673, 793
BccI CCATC 6 cut(s) 74, 561, 852, 1123, 1360, 1391
BceAI ACGGC 1 cut(s) 857
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 5 cut(s) 216, 456, 474, 721, 1433
BfaI CTAG 2 cut(s) 144, 950
BfmI CTRYAG 1 cut(s) 1044
BfrI CTTAAG 1 cut(s) 811
BglII AGATCT 1 cut(s) 898
BisI GCNGC 3 cut(s) 552, 687, 807
BlsI GCNGC 3 cut(s) 553, 688, 808
Bme1390I CCNGG 1 cut(s) 216
BmeRI GACNNNNNGTC 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 3 cut(s) 411, 826, 950
BpiI GAAGAC 6 cut(s) 57, 264, 295, 593, 780, 1399
BpmI CTGGAG 3 cut(s) 948, 1305, 1491
BpuEI CTTGAG 3 cut(s) 1227, 1358, 1540
BpuMI CCSGG 1 cut(s) 216
BsaAI YACGTR 2 cut(s) 10, 70
BsaHI GRCGYC 1 cut(s) 1176
BsaI GGTCTC 1 cut(s) 1433
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 2 cut(s) 298, 617
BsaXI ACNNNNNCTCC 2 cut(s) 1303, 1333
Bsc4I CCNNNNNNNGG 6 cut(s) 162, 215, 221, 677, 888, 1445
Bse118I RCCGGY 1 cut(s) 1172
Bse1I ACTGG 2 cut(s) 706, 1322
Bse3DI GCAATG 2 cut(s) 854, 1335
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 3 cut(s) 436, 440, 572
BseLI CCNNNNNNNGG 6 cut(s) 162, 215, 221, 677, 888, 1445
BseMI GCAATG 2 cut(s) 854, 1335
BseMII CTCAG 5 cut(s) 182, 395, 907, 916, 1083
BseNI ACTGG 2 cut(s) 706, 1322
BseRI GAGGAG 2 cut(s) 424, 1355
BseXI GCAGC 3 cut(s) 538, 673, 793
BshFI GGCC 3 cut(s) 166, 681, 1109
BsiSI CCGG 4 cut(s) 216, 299, 618, 1173
BslI CCNNNNNNNGG 6 cut(s) 162, 215, 221, 677, 888, 1445
BsmAI GTCTC 5 cut(s) 216, 456, 474, 721, 1433
BsmBI CGTCTC 1 cut(s) 216
BsnI GGCC 3 cut(s) 166, 681, 1109
Bso31I GGTCTC 1 cut(s) 1433
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 5 cut(s) 19, 190, 898, 1469, 1629
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 3 cut(s) 166, 681, 1109
BspCNI CTCAG 5 cut(s) 181, 394, 906, 915, 1082
BspEI TCCGGA 1 cut(s) 298
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 1 cut(s) 1477
BspTI CTTAAG 1 cut(s) 811
BspTNI GGTCTC 1 cut(s) 1433
BsrDI GCAATG 2 cut(s) 854, 1335
BsrFI RCCGGY 1 cut(s) 1172
BsrI ACTGG 2 cut(s) 706, 1322
BssAI RCCGGY 1 cut(s) 1172
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 5 cut(s) 19, 190, 898, 1469, 1629
BssNI GRCGYC 1 cut(s) 1176
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 8 cut(s) 15, 210, 316, 647, 886, 1218, 1224, 1282
BstACI GRCGYC 1 cut(s) 1176
BstAFI CTTAAG 1 cut(s) 811
BstBAI YACGTR 2 cut(s) 10, 70
BstC8I GCNNGC 3 cut(s) 748, 841, 1174
BstDEI CTNAG 8 cut(s) 168, 374, 381, 893, 902, 911, 1069, 1260
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 436, 440, 572
BstKTI GATC 5 cut(s) 22, 193, 901, 1472, 1632
BstMAI GTCTC 5 cut(s) 216, 456, 474, 721, 1433
BstMBI GATC 5 cut(s) 19, 190, 898, 1469, 1629
BstMWI GCNNNNNNNGC 2 cut(s) 384, 1178
BstNSI RCATGY 3 cut(s) 750, 1079, 1146
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 1044
BstSNI TACGTA 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 538, 673, 793
BstV2I GAAGAC 6 cut(s) 57, 264, 295, 593, 780, 1399
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 3 cut(s) 166, 681, 1109
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 436, 440, 572
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 3 cut(s) 156, 652, 951
Cac8I GCNNGC 3 cut(s) 748, 841, 1174
CciI TCATGA 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 1172
CseI GACGC 1 cut(s) 1165
Csp6I GTAC 8 cut(s) 11, 206, 497, 696, 725, 908, 1158, 1378
CviAII CATG 6 cut(s) 445, 455, 747, 1076, 1143, 1456
CviQI GTAC 8 cut(s) 11, 206, 497, 696, 725, 908, 1158, 1378
DdeI CTNAG 8 cut(s) 168, 374, 381, 893, 902, 911, 1069, 1260
DpnI GATC 5 cut(s) 21, 192, 900, 1471, 1631
DpnII GATC 5 cut(s) 19, 190, 898, 1469, 1629
DriI GACNNNNNGTC 1 cut(s) 649
EaeI YGGCCR 2 cut(s) 679, 1107
Eam1105I GACNNNNNGTC 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 1433
Eco57I CTGAAG 1 cut(s) 1581
EcoRI GAATTC 1 cut(s) 996
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 6 cut(s) 448, 458, 750, 1079, 1146, 1459
FatI CATG 6 cut(s) 444, 454, 746, 1075, 1142, 1455
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 552, 687, 807
FokI GGATG 3 cut(s) 427, 443, 579
Fsp4HI GCNGC 3 cut(s) 552, 687, 807
FspBI CTAG 2 cut(s) 144, 950
GluI GCNGC 3 cut(s) 552, 687, 807
GsuI CTGGAG 3 cut(s) 948, 1305, 1491
HaeIII GGCC 3 cut(s) 166, 681, 1109
HapII CCGG 4 cut(s) 216, 299, 618, 1173
HgaI GACGC 1 cut(s) 1165
Hin1I GRCGYC 1 cut(s) 1176
Hin1II CATG 6 cut(s) 448, 458, 750, 1079, 1146, 1459
HincII GTYRAC 2 cut(s) 1029, 1479
HindII GTYRAC 2 cut(s) 1029, 1479
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 4 cut(s) 216, 299, 618, 1173
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 5 cut(s) 206, 1029, 1227, 1275, 1479
Hpy188I TCNGA 8 cut(s) 19, 97, 106, 171, 257, 655, 896, 1164
Hpy188III TCNNGA 9 cut(s) 299, 455, 671, 718, 1071, 1138, 1244, 1337, 1519
Hpy8I GTNNAC 5 cut(s) 206, 1029, 1227, 1275, 1479
Hpy99I CGWCG 1 cut(s) 1181
HpyAV CCTTC 4 cut(s) 414, 554, 638, 1450
HpyCH4III ACNGT 8 cut(s) 15, 210, 316, 647, 886, 1218, 1224, 1282
HpyCH4IV ACGT 4 cut(s) 9, 69, 513, 706
HpyCH4V TGCA 4 cut(s) 839, 854, 941, 1256
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 1178
HpyF3I CTNAG 8 cut(s) 168, 374, 381, 893, 902, 911, 1069, 1260
HpySE526I ACGT 4 cut(s) 9, 69, 513, 706
Hsp92I GRCGYC 1 cut(s) 1176
Hsp92II CATG 6 cut(s) 448, 458, 750, 1079, 1146, 1459
Kpn2I TCCGGA 1 cut(s) 298
KroI GCCGGC 1 cut(s) 1172
KroNI GCCGGC 1 cut(s) 1174
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 5 cut(s) 19, 190, 898, 1469, 1629
LmnI GCTCC 2 cut(s) 736, 1586
Lsp1109I GCAGC 3 cut(s) 538, 673, 793
LweI GCATC 3 cut(s) 411, 826, 950
MaeI CTAG 2 cut(s) 144, 950
MaeII ACGT 4 cut(s) 9, 69, 513, 706
MaeIII GTNAC 7 cut(s) 173, 316, 1058, 1218, 1368, 1489, 1540
MalI GATC 5 cut(s) 21, 192, 900, 1471, 1631
MboI GATC 5 cut(s) 19, 190, 898, 1469, 1629
MflI RGATCY 1 cut(s) 898
MlsI TGGCCA 2 cut(s) 681, 1109
MluCI AATT 5 cut(s) 238, 781, 996, 1251, 1640
MluNI TGGCCA 2 cut(s) 681, 1109
MlyI GAGTC 3 cut(s) 659, 1044, 1342
MmeI TCCRAC 2 cut(s) 508, 973
Mox20I TGGCCA 2 cut(s) 681, 1109
MroI TCCGGA 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 1172
MroXI GAANNNNTTC 2 cut(s) 91, 535
MscI TGGCCA 2 cut(s) 681, 1109
MseI TTAA 4 cut(s) 138, 812, 1250, 1571
Msp20I TGGCCA 2 cut(s) 681, 1109
MspCI CTTAAG 1 cut(s) 811
MspI CCGG 4 cut(s) 216, 299, 618, 1173
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 384, 1178
NaeI GCCGGC 1 cut(s) 1174
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 444
NdeII GATC 5 cut(s) 19, 190, 898, 1469, 1629
NgoMIV GCCGGC 1 cut(s) 1172
NlaIII CATG 6 cut(s) 448, 458, 750, 1079, 1146, 1459
NmuCI GTSAC 3 cut(s) 1218, 1368, 1489
NspI RCATGY 3 cut(s) 750, 1079, 1146
PaeI GCATGC 1 cut(s) 750
PagI TCATGA 1 cut(s) 454
PciI ACATGT 1 cut(s) 1142
PdiI GCCGGC 1 cut(s) 1174
PdmI GAANNNNTTC 2 cut(s) 91, 535
PfeI GAWTC 7 cut(s) 4, 98, 252, 302, 460, 621, 1208
PflMI CCANNNNNTGG 2 cut(s) 162, 888
PkrI GCNGC 3 cut(s) 553, 688, 808
PleI GAGTC 3 cut(s) 658, 1044, 1341
PpsI GAGTC 3 cut(s) 658, 1044, 1341
Ppu21I YACGTR 2 cut(s) 10, 70
PscI ACATGT 1 cut(s) 1142
Psp1406I AACGTT 1 cut(s) 513
PsrI GAACNNNNNNTAC 2 cut(s) 342, 374
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 8 cut(s) 12, 207, 498, 697, 726, 909, 1159, 1379
RsaNI GTAC 8 cut(s) 11, 206, 497, 696, 725, 908, 1158, 1378
SaqAI TTAA 4 cut(s) 138, 812, 1250, 1571
SatI GCNGC 3 cut(s) 552, 687, 807
Sau3AI GATC 5 cut(s) 19, 190, 898, 1469, 1629
SchI GAGTC 3 cut(s) 659, 1044, 1342
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 3 cut(s) 411, 826, 950
SfcI CTRYAG 1 cut(s) 1044
SmlI CTYRAG 4 cut(s) 811, 1242, 1337, 1519
SmoI CTYRAG 4 cut(s) 811, 1242, 1337, 1519
SnaBI TACGTA 1 cut(s) 70
SphI GCATGC 1 cut(s) 750
Sse9I AATT 5 cut(s) 238, 781, 996, 1251, 1640
SspI AATATT 2 cut(s) 768, 1093
SspMI CTAG 2 cut(s) 144, 950
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 8 cut(s) 15, 210, 316, 647, 886, 1218, 1224, 1282
TaiI ACGT 4 cut(s) 12, 72, 516, 709
TaqI TCGA 7 cut(s) 185, 242, 407, 419, 642, 660, 719
TasI AATT 5 cut(s) 238, 781, 996, 1251, 1640
TatI WGTACW 3 cut(s) 496, 724, 1157
TfiI GAWTC 7 cut(s) 4, 98, 252, 302, 460, 621, 1208
Tru1I TTAA 4 cut(s) 138, 812, 1250, 1571
Tru9I TTAA 4 cut(s) 138, 812, 1250, 1571
TscAI CASTG 3 cut(s) 163, 652, 951
TseFI GTSAC 3 cut(s) 1218, 1368, 1489
TseI GCWGC 3 cut(s) 551, 686, 806
Tsp45I GTSAC 3 cut(s) 1218, 1368, 1489
TspDTI ATGAA 5 cut(s) 17, 135, 363, 780, 1002
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 3 cut(s) 163, 652, 951
Van91I CCANNNNNTGG 2 cut(s) 162, 888
Vha464I CTTAAG 1 cut(s) 811
XapI RAATTY 1 cut(s) 996
XceI RCATGY 3 cut(s) 750, 1079, 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XmnI GAANNNNTTC 2 cut(s) 91, 535
XspI CTAG 2 cut(s) 144, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.