Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Reverse (-)

41736150 .. 41738315

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0301400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCCATGACACTTCCCAAAGAGCTTCCCACCATCAATTTCTCCCTCCAAGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAGTCCGCTATGCACTCGAAGAATACGGTTGCTTTGTGGCTCTGTACCAACAAGTTTCCCCACAGCTCATGGACAATATCTTTGGCCAATCCAGGGATTTGTTCGAGGTTCCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGTGGCTATATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGACAACGTCACATCCCCACAAGAAACTCAAAAATTCAGGGACCTCATGTGGCCTAATGGAAAGACCAAATTCTGTGAAATCACAGATCTGTTTGCCAAGTTGCTCGGGGACTTGGAAAACACAGTGGAAAAAATGATGTTCGAAAGCTTTGGGGTACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTACAATACACCAGAAGAGAGTGACACGGTCATAAGGTTTGCGAGCCACACAGACAAGAACTTCACCACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCAGACTAAGGATGGTGATTGGATTAGTGTCGAGTCTGCACCTTCTCAGTTCCTCTTCATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCATCGAGTGAAGCACTGCGGGGACAAGACTCGATACTCACTGGGAATGTTTACCTTTAACAATGGAGTATTCCAAGTACCTAAAGAGCTAGTAGACGACAGCCACCCACTCCTCTACAACCAGTTCGACAGTCGTGGCTTCATAAGATTTTACACCACAGAGGAGGCCAAGAAGGCAAAGTCACCCACCAAAGCCTATTGCGGTGTTAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

316

Amino Acids

35.95

Weight (kDa)

5.58

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 88	3.2e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 263	1.5e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
AbsI	CCTCGAGG	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccBSI	CCGCTC	2 cut(s)	274, 283
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	5 cut(s)	103, 272, 281, 753, 936
AcoI	YGGCCR	2 cut(s)	181, 297
AcsI	RAATTY	2 cut(s)	335, 371
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	4 cut(s)	143, 459, 521, 813
AfiI	CCNNNNNNNGG	3 cut(s)	190, 251, 682
AgsI	TTSAA	2 cut(s)	61, 492
AjnI	CCWGG	3 cut(s)	64, 77, 188
AluBI	AGCT	6 cut(s)	28, 75, 163, 450, 728, 823
AluI	AGCT	6 cut(s)	28, 75, 163, 450, 728, 823
Ama87I	CYCGRG	2 cut(s)	407, 617
AoxI	GGCC	5 cut(s)	181, 297, 353, 613, 900
ApoI	RAATTY	2 cut(s)	335, 371
ArsI	GACNNNNNNTTYG	4 cut(s)	161, 193, 207, 239
Asp718I	GGTACC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	263, 343
AsuHPI	GGTGA	4 cut(s)	574, 650, 701, 909
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	2 cut(s)	407, 617
AvaII	GGWCC	2 cut(s)	263, 343
BalI	TGGCCA	2 cut(s)	183, 299
BanI	GGYRCC	1 cut(s)	457
BccI	CCATC	4 cut(s)	44, 629, 686, 744
BciT130I	CCWGG	3 cut(s)	66, 79, 190
BfaI	CTAG	2 cut(s)	824, 949
BfuAI	ACCTGC	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	908
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	3 cut(s)	66, 79, 190
Bme18I	GGWCC	2 cut(s)	263, 343
BmeT110I	CYCGRG	2 cut(s)	407, 617
BmgT120I	GGNCC	2 cut(s)	263, 343
BmiI	GGNNCC	5 cut(s)	7, 207, 243, 344, 459
BmrFI	CCNGG	3 cut(s)	66, 79, 190
BmrI	ACTGGG	1 cut(s)	785
BmuI	ACTGGG	1 cut(s)	785
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	55, 500
BsaJI	CCNNGG	3 cut(s)	78, 189, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 251, 682
Bse1I	ACTGG	2 cut(s)	780, 856
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	3 cut(s)	66, 79, 190
BseDI	CCNNGG	3 cut(s)	78, 189, 250
BseGI	GGATG	2 cut(s)	314, 640
BseLI	CCNNNNNNNGG	3 cut(s)	190, 251, 682
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	2 cut(s)	780, 856
BseRI	GAGGAG	3 cut(s)	254, 836, 911
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	5 cut(s)	183, 299, 355, 615, 902
BshNI	GGYRCC	1 cut(s)	457
BsiHKCI	CYCGRG	2 cut(s)	407, 617
BslFI	GGGAC	3 cut(s)	356, 425, 770
BslI	CCNNNNNNNGG	3 cut(s)	190, 251, 682
BsmFI	GGGAC	3 cut(s)	356, 425, 770
BsnI	GGCC	5 cut(s)	183, 299, 355, 615, 902
BsoBI	CYCGRG	2 cut(s)	407, 617
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	5 cut(s)	103, 272, 281, 753, 936
BspANI	GGCC	5 cut(s)	183, 299, 355, 615, 902
BspCNI	CTCAG	1 cut(s)	682
BspLI	GGNNCC	5 cut(s)	7, 207, 243, 344, 459
BspMI	ACCTGC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	457
BsrBI	CCGCTC	2 cut(s)	274, 283
BsrDI	GCAATG	1 cut(s)	718
BsrI	ACTGG	2 cut(s)	780, 856
BssECI	CCNNGG	3 cut(s)	78, 189, 250
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	3 cut(s)	66, 79, 190
Bst4CI	ACNGT	6 cut(s)	125, 251, 427, 497, 547, 866
Bst6I	CTCTTC	2 cut(s)	528, 683
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	562, 730
BstDEI	CTNAG	2 cut(s)	630, 669
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	314, 640
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 908
BstNI	CCWGG	3 cut(s)	66, 79, 190
BstSCI	CCNGG	3 cut(s)	64, 77, 188
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	5 cut(s)	183, 299, 355, 615, 902
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	314, 640
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	3 cut(s)	432, 748, 773
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	562, 730
Cfr13I	GGNCC	2 cut(s)	263, 343
Csp6I	GTAC	4 cut(s)	142, 458, 520, 812
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	7 cut(s)	10, 166, 277, 295, 349, 602, 682
CviQI	GTAC	4 cut(s)	142, 458, 520, 812
DdeI	CTNAG	2 cut(s)	630, 669
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	2 cut(s)	181, 297
Eam1104I	CTCTTC	2 cut(s)	528, 683
EarI	CTCTTC	2 cut(s)	528, 683
Eco47I	GGWCC	2 cut(s)	263, 343
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	2 cut(s)	407, 617
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	3 cut(s)	64, 77, 188
FaeI	CATG	7 cut(s)	13, 169, 280, 298, 352, 605, 685
FaqI	GGGAC	3 cut(s)	356, 425, 770
FatI	CATG	7 cut(s)	9, 165, 276, 294, 348, 601, 681
FauI	CCCGC	2 cut(s)	279, 746
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	301, 647
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	824, 949
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	5 cut(s)	183, 299, 355, 615, 902
Hin1II	CATG	7 cut(s)	13, 169, 280, 298, 352, 605, 685
HindIII	AAGCTT	2 cut(s)	448, 726
HinfI	GANTC	3 cut(s)	476, 656, 763
HphI	GGTGA	4 cut(s)	574, 650, 701, 909
Hpy166II	GTNNAC	2 cut(s)	786, 829
Hpy188I	TCNGA	2 cut(s)	263, 627
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	786, 829
HpyAV	CCTTC	3 cut(s)	284, 675, 901
HpyCH4III	ACNGT	6 cut(s)	125, 251, 427, 497, 547, 866
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	93, 110, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 908
HpyF3I	CTNAG	2 cut(s)	630, 669
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	13, 169, 280, 298, 352, 605, 685
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	3 cut(s)	80, 241, 708
MaeI	CTAG	2 cut(s)	824, 949
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	310, 539, 915
MalI	GATC	1 cut(s)	390
MbiI	CCGCTC	2 cut(s)	274, 283
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	128, 494, 497, 545, 670
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	2 cut(s)	183, 299
MluCI	AATT	3 cut(s)	40, 335, 371
MluNI	TGGCCA	2 cut(s)	183, 299
MlyI	GAGTC	2 cut(s)	665, 757
Mox20I	TGGCCA	2 cut(s)	183, 299
MscI	TGGCCA	2 cut(s)	183, 299
MseI	TTAA	2 cut(s)	792, 942
Msp20I	TGGCCA	2 cut(s)	183, 299
MspR9I	CCNGG	3 cut(s)	66, 79, 190
MvaI	CCWGG	3 cut(s)	66, 79, 190
MwoI	GCNNNNNNNGC	2 cut(s)	280, 908
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	7 cut(s)	13, 169, 280, 298, 352, 605, 685
NlaIV	GGNNCC	5 cut(s)	7, 207, 243, 344, 459
NmuCI	GTSAC	3 cut(s)	310, 539, 915
NspV	TTCGAA	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	476
PflFI	GACNNNGTC	2 cut(s)	308, 545
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	2 cut(s)	664, 757
PpsI	GAGTC	2 cut(s)	664, 757
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	64, 77, 188
PspGI	CCWGG	3 cut(s)	64, 77, 188
PspN4I	GGNNCC	5 cut(s)	7, 207, 243, 344, 459
PspPI	GGNCC	2 cut(s)	263, 343
PspPPI	RGGWCCY	1 cut(s)	343
PspXI	VCTCGAGB	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	2 cut(s)	308, 545
RsaI	GTAC	4 cut(s)	143, 459, 521, 813
RsaNI	GTAC	4 cut(s)	142, 458, 520, 812
SaqAI	TTAA	2 cut(s)	792, 942
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	263, 343
SchI	GAGTC	2 cut(s)	665, 757
ScrFI	CCNGG	3 cut(s)	66, 79, 190
Sfr274I	CTCGAG	1 cut(s)	617
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	2 cut(s)	263, 343
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	3 cut(s)	70, 515, 617
SmoI	CTYRAG	3 cut(s)	70, 515, 617
Sse9I	AATT	3 cut(s)	40, 335, 371
SsiI	CCGC	5 cut(s)	103, 272, 281, 753, 936
SspMI	CTAG	2 cut(s)	824, 949
StyD4I	CCNGG	3 cut(s)	64, 77, 188
TaaI	ACNGT	6 cut(s)	125, 251, 427, 497, 547, 866
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	9 cut(s)	114, 201, 213, 444, 618, 654, 739, 766, 861
TasI	AATT	3 cut(s)	40, 335, 371
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	792, 942
Tru9I	TTAA	2 cut(s)	792, 942
TscAI	CASTG	3 cut(s)	432, 755, 780
TseFI	GTSAC	3 cut(s)	310, 539, 915
Tsp45I	GTSAC	3 cut(s)	310, 539, 915
TspDTI	ATGAA	4 cut(s)	303, 489, 670, 865
TspRI	CASTG	3 cut(s)	432, 755, 780
Tth111I	GACNNNGTC	2 cut(s)	308, 545
VpaK11BI	GGWCC	2 cut(s)	263, 343
XapI	RAATTY	2 cut(s)	335, 371
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	2 cut(s)	824, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.