Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Forward (+)

13699023 .. 13701318

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATAACTCGGTTTCGGATCGGAGTTTTTACGTTGAGAGTGAGGAGGAAGATGATGTGGAAAAGGACTTCAATAAGAGCATTGAAGACGGAGGCGACTCGGATTCTTCTGCCGAATCTTTTACTGAGAATCAGCAGCCGAATAATCCCAGTTCTTACAACACTCAATGGCCTCAAAGTTACAGTGTACCGTCCCCTGGTATTGGGTTTCTGGGCACTCCTTCATTGTCAAGACTAGGAAGTTCTTATCTTTCCTCATCCCTAACAAGAAGGCACACTCCCGAAACTTTACCTTTCTTGCCGAAACCATTACCAACACTCGCAGATAAGGAACAACAACAACAGCCGCAGAGACGCAGTTCTCATTCTCTGCTTCCTCCTTTGCCAAGGAGGACTTCTGTTAGAAAAGATGAGAAAGCATCCAGAGTTACTCATGACCATCATCCGATGTCTCGCCACAGCTCCTTTACACAAGCTGTGTTTAATGGAATTAACGTTCTTTGCGGGGTTGGAATCCTTTCGACGCCATATGCAATCAAGGAAGGAGGATGGCTCGGGCTCTTCGTTCTGCTTATTTTTGCAGTGCTTTCGTTCTACACCGGATTGCTCCTGCGTTACTGCTTGGATAGCCAACCTGGGCTCGAGACATACCCGGACATTGGCCAAGCTGCATTTGGTATTGGAGGCAGAATCGGCATCTCGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

237

Amino Acids

25.97

Weight (kDa)

5.67

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	347, 504
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	661
AcyI	GRCGYC	1 cut(s)	524
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	197, 203, 659
AgsI	TTSAA	2 cut(s)	73, 86
AjnI	CCWGG	2 cut(s)	196, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	4 cut(s)	462, 476, 668, 708
AluI	AGCT	4 cut(s)	462, 476, 668, 708
Alw26I	GTCTC	3 cut(s)	346, 456, 638
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	2 cut(s)	554, 641
AoxI	GGCC	2 cut(s)	170, 661
ApeKI	GCWGC	2 cut(s)	136, 668
Asp700I	GAANNNNTTC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	653
AvaI	CYCGRG	2 cut(s)	554, 641
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	663
BanII	GRGCYC	2 cut(s)	561, 642
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	148, 655
BccI	CCATC	2 cut(s)	447, 543
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	2 cut(s)	198, 636
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	346, 456, 638
BfaI	CTAG	2 cut(s)	236, 709
BisI	GCNGC	3 cut(s)	137, 347, 669
BlsI	GCNGC	3 cut(s)	138, 348, 670
Bme1390I	CCNGG	3 cut(s)	198, 636, 653
BmeT110I	CYCGRG	2 cut(s)	554, 641
BmrFI	CCNGG	3 cut(s)	198, 636, 653
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	428, 705
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
BpuMI	CCSGG	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	196, 386, 635
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 203, 659
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	198, 636
BseDI	CCNNGG	3 cut(s)	196, 386, 635
BseGI	GGATG	4 cut(s)	257, 419, 442, 554
BseLI	CCNNNNNNNGG	3 cut(s)	197, 203, 659
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	148, 655
BshFI	GGCC	2 cut(s)	172, 663
BsiHKCI	CYCGRG	2 cut(s)	554, 641
BsiSI	CCGG	2 cut(s)	600, 653
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	197, 203, 659
BsmAI	GTCTC	3 cut(s)	346, 456, 638
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	172, 663
BsoBI	CYCGRG	2 cut(s)	554, 641
Bsp1286I	GDGCHC	3 cut(s)	218, 561, 642
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	347, 504
BspANI	GGCC	2 cut(s)	172, 663
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	433
BspPI	GGATC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	196, 386, 635
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	198, 636
Bst4CI	ACNGT	2 cut(s)	185, 192
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	257, 419, 442, 554
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	3 cut(s)	346, 456, 638
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	627, 693
BstNI	CCWGG	2 cut(s)	198, 636
BstSCI	CCNGG	3 cut(s)	196, 634, 651
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	148, 655
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	172, 663
BtsCI	GGATG	4 cut(s)	257, 419, 442, 554
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	190, 588
CciI	TCATGA	1 cut(s)	433
CseI	GACGC	2 cut(s)	363, 532
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	561, 642
Eco88I	CYCGRG	2 cut(s)	554, 641
EcoRII	CCWGG	2 cut(s)	196, 634
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	2 cut(s)	561, 642
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	1 cut(s)	437
FaiI	YATR	4 cut(s)	435, 529, 531, 649
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	433
FauI	CCCGC	1 cut(s)	497
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	137, 347, 669
FokI	GGATG	4 cut(s)	244, 406, 429, 561
FriOI	GRGCYC	2 cut(s)	561, 642
Fsp4HI	GCNGC	3 cut(s)	137, 347, 669
FspBI	CTAG	2 cut(s)	236, 709
GluI	GCNGC	3 cut(s)	137, 347, 669
HaeIII	GGCC	2 cut(s)	172, 663
HapII	CCGG	2 cut(s)	600, 653
HgaI	GACGC	2 cut(s)	363, 532
Hin1I	GRCGYC	1 cut(s)	524
Hin1II	CATG	1 cut(s)	437
HinfI	GANTC	6 cut(s)	98, 104, 116, 130, 513, 690
HpaII	CCGG	2 cut(s)	600, 653
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	4 cut(s)	19, 24, 103, 447
Hpy188III	TCNNGA	5 cut(s)	231, 281, 423, 434, 643
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	231, 264, 536
HpyCH4III	ACNGT	2 cut(s)	185, 192
HpyCH4IV	ACGT	2 cut(s)	33, 495
HpyCH4V	TGCA	3 cut(s)	533, 581, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	627, 693
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	33, 495
Hsp92I	GRCGYC	1 cut(s)	524
Hsp92II	CATG	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	19
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	467, 612
Lsp1109I	GCAGC	2 cut(s)	148, 655
LweI	GCATC	2 cut(s)	428, 705
MaeI	CTAG	2 cut(s)	236, 709
MaeII	ACGT	2 cut(s)	33, 495
MaeIII	GTNAC	3 cut(s)	179, 427, 614
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	4 cut(s)	62, 98, 99, 553
MhlI	GDGCHC	3 cut(s)	218, 561, 642
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	1 cut(s)	489
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	9 cut(s)	37, 40, 86, 183, 265, 384, 387, 539, 677
Mox20I	TGGCCA	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	2 cut(s)	483, 492
Msp20I	TGGCCA	1 cut(s)	663
MspI	CCGG	2 cut(s)	600, 653
MspR9I	CCNGG	3 cut(s)	198, 636, 653
MvaI	CCWGG	2 cut(s)	198, 636
MwoI	GCNNNNNNNGC	2 cut(s)	627, 693
NciI	CCSGG	1 cut(s)	653
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	641
PagI	TCATGA	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	104, 116, 130, 513, 690
PkrI	GCNGC	3 cut(s)	138, 348, 670
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	196, 634
PspGI	CCWGG	2 cut(s)	196, 634
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	483, 492
SatI	GCNGC	3 cut(s)	137, 347, 669
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	198, 636, 653
SduI	GDGCHC	3 cut(s)	218, 561, 642
SetI	ASST	8 cut(s)	36, 295, 464, 478, 498, 637, 670, 710
SfaNI	GCATC	2 cut(s)	428, 705
Sfr274I	CTCGAG	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	347, 504
SspMI	CTAG	2 cut(s)	236, 709
StyD4I	CCNGG	3 cut(s)	196, 634, 651
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	185, 192
TaiI	ACGT	2 cut(s)	36, 498
TaqI	TCGA	2 cut(s)	521, 642
TasI	AATT	1 cut(s)	489
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	5 cut(s)	104, 116, 130, 513, 690
Tru1I	TTAA	2 cut(s)	483, 492
Tru9I	TTAA	2 cut(s)	483, 492
TscAI	CASTG	2 cut(s)	190, 588
TseI	GCWGC	2 cut(s)	136, 668
TspDTI	ATGAA	2 cut(s)	17, 213
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	190, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	2 cut(s)	236, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.