FvH4_7g18870

Amino acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
15696440 .. 15707913
11474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18870.t8

Sequence Viewer

Length: 1656 bp
ATGAAGAACTCGGTGTCGGATCACAGCTTTTACATTGACAGTGAAGAAGAAGATGAGGAGGCAAAGGACAACAGAAGCATAGAAGATGGGAATGATTCTGATTCTTCGGGTTCGGAAGCCGATCACGGCCAGCAGCAGCAGCAGATTCAGCCCAGTTCTTACAACACCCAATGGCCTCAGAGTTACAGGCAATCCATTGACCTGTATAGTAGTGTGCCATCCCCTGGCATTGGGTTTCTAGGCACTCCTTCACTTACAAGATTAGGAAGTTCGTTTCTTTCCTCATCACTAACGAGAAGGCACACTCCCGAAACATTACCTTTTTTGGCAAAACCTGCGGTACCAACCCTTGCTGAGCAGCAACAGCAGCAGCAGCAGAGACGAAGTTCTCATTCTCTACTTCCACCAATTCCTTCAAGGAGGTCTTCAATAAGAAAAGATGATAAATCCAAGATTTCTCAAGACCATCATCCAATGTCTCGCCACAGCTCATTTGCACAAGCTGTGGTTAATGGTATCAATGTTCTTTGTGGCGTGGGAATTCTATCGACACCATATGCAGTCAAAGAAGGAGGATGGATCGGGCTTTCCATTTTGTTTATTTTTGCAGTGCTGTCGTTCTACACTGGATTGCTTCTGCGTTACTGCTTGGATAGTCAACCTGGGCTTGAGACTTACCCAGATATTGGCCAAGCTGCATTTGGTACCCCAGGCCGAATCGCCATCTCGATAATACTGTACGTGGAATTATATGCTTGTTGCATAGAATATATAATCTTGGAAGGTGACAACCTGTCTTCGCTATTCCCAAATGCACACCTGAACTTGGGTGGATATGAGTTAAATGCTCACGTTTTGTTTGCGATTCTGACCACCCTTGCTGTTCTACCTACTGTTTGGCTTCGAGACCTCAGCGTTCTTAGTTATATCTCAGCTGGTGGAGTTATTGCGTCGATTATGGTAGTTCTTTGCTTGTTTTGGGTTGGTCTTGTAGATGGTGTCGGCTTTGAGAGCAAAGGGACTCCACTGAACCTTGCAACTCTTCCTGTTGCTATGGGTCTCTATGGTTACTGCTACTCAGGACATGCTGTATTCCCAAACATTTATACTTCACTGGAAAAACCAAACCAATACCCTTTAATTCTCTTAACATGCTTTTGCATATGTACTATCATGTATGCTGGAGTTGCTGTCATGGGTTACACAATGTTTGGAGAAGCAACATTGTCACAGTTTACTCTAAACATGCCTCACGATTTGGTTGCCACAAAGATTGCTGTGTGGACTACGGTAGTCAACCCATTTACCAAATATGCATTAACTATGTCTCCCGTGGCAATGAGTCTGGAGGAGCTGGTACCGTCAGACAAGTCTCGCATGTACTCTATCTTTATTAGAACAGGGCTGGTGTTCTCTACCCTGGTTGTTGGTCTCTGCATACCTTTCTTTGGTCTCATGATGTCGTTGATCGGATCTTTATTCACAATGCTTGTAGCCTTGATACTTCCTTGTGCTTGTTATCTGACTATCCGTAAGGAACAAGTAACTCGTTTTCAGATGATACTTTGTATTATAATTATTACAGTAGGGGTGGTAGCATCTGTCTTCGGAACATATTCAGCTGTATCTAAGATCGTGGAGAATTTGAGCAGCTGA

Protein Analysis

552

Amino Acids

60.3

Weight (kDa)

5.67

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 161 - 539 8.8e-70 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1574
Acc36I ACCTGC 1 cut(s) 343
Acc65I GGTACC 3 cut(s) 340, 704, 1357
AccB1I GGYRCC 3 cut(s) 340, 704, 1357
AccB7I CCANNNNNTGG 2 cut(s) 224, 686
AciI CCGC 1 cut(s) 338
AclWI GGATC 3 cut(s) 27, 587, 1480
AcoI YGGCCR 2 cut(s) 127, 688
AcsI RAATTY 2 cut(s) 540, 1642
AfaI GTAC 6 cut(s) 342, 706, 740, 1168, 1359, 1382
AfiI CCNNNNNNNGG 5 cut(s) 224, 230, 686, 826, 1448
AgsI TTSAA 2 cut(s) 417, 429
AhdI GACNNNNNGTC 1 cut(s) 793
AjnI CCWGG 4 cut(s) 223, 661, 709, 1419
AluBI AGCT 8 cut(s) 27, 489, 503, 695, 935, 1354, 1622, 1653
AluI AGCT 8 cut(s) 27, 489, 503, 695, 935, 1354, 1622, 1653
Alw26I GTCTC 9 cut(s) 373, 483, 665, 900, 1064, 1332, 1377, 1436, 1457
AlwI GGATC 3 cut(s) 27, 587, 1480
AoxI GGCC 4 cut(s) 127, 173, 688, 712
ApeKI GCWGC 9 cut(s) 133, 136, 139, 358, 367, 370, 373, 695, 1650
ApoI RAATTY 2 cut(s) 540, 1642
Asp700I GAANNNNTTC 1 cut(s) 1615
Asp718I GGTACC 3 cut(s) 340, 704, 1357
AsuHPI GGTGA 1 cut(s) 797
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 3 cut(s) 340, 704, 1357
BbsI GAAGAC 3 cut(s) 417, 789, 1597
BbvCI CCTCAGC 1 cut(s) 911
BbvI GCAGC 8 cut(s) 145, 148, 151, 370, 379, 382, 385, 682
BccI CCATC 6 cut(s) 80, 226, 474, 570, 731, 989
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 4 cut(s) 597, 631, 1244, 1278
BciT130I CCWGG 4 cut(s) 225, 663, 711, 1421
BcoDI GTCTC 9 cut(s) 373, 483, 665, 900, 1064, 1332, 1377, 1436, 1457
BfaI CTAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 9 cut(s) 134, 137, 140, 359, 368, 371, 374, 696, 1651
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 9 cut(s) 135, 138, 141, 360, 369, 372, 375, 697, 1652
Bme1390I CCNGG 4 cut(s) 225, 663, 711, 1421
BmeRI GACNNNNNGTC 1 cut(s) 793
BmiI GGNNCC 3 cut(s) 342, 706, 1359
BmrFI CCNGG 4 cut(s) 225, 663, 711, 1421
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 1607
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 3 cut(s) 417, 789, 1597
BpmI CTGGAG 2 cut(s) 1203, 1367
Bpu10I CCTNAGC 1 cut(s) 911
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 444, 689
BsaAI YACGTR 1 cut(s) 742
BsaI GGTCTC 4 cut(s) 900, 1064, 1436, 1457
BsaJI CCNNGG 5 cut(s) 223, 662, 709, 1332, 1419
BsaXI ACNNNNNCTCC 4 cut(s) 1176, 1206, 1312, 1342
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 230, 686, 826, 1448
Bse1I ACTGG 3 cut(s) 153, 631, 1119
Bse3DI GCAATG 1 cut(s) 1344
BseBI CCWGG 4 cut(s) 225, 663, 711, 1421
BseDI CCNNGG 5 cut(s) 223, 662, 709, 1332, 1419
BseGI GGATG 3 cut(s) 218, 469, 581
BseLI CCNNNNNNNGG 5 cut(s) 224, 230, 686, 826, 1448
BseMI GCAATG 1 cut(s) 1344
BseMII CTCAG 5 cut(s) 191, 345, 925, 945, 1092
BseNI ACTGG 3 cut(s) 153, 631, 1119
BseRI GAGGAG 2 cut(s) 71, 1364
BseXI GCAGC 8 cut(s) 145, 148, 151, 370, 379, 382, 385, 682
BshFI GGCC 4 cut(s) 129, 175, 690, 714
BshNI GGYRCC 3 cut(s) 340, 704, 1357
BslFI GGGAC 1 cut(s) 1033
BslI CCNNNNNNNGG 5 cut(s) 224, 230, 686, 826, 1448
BsmAI GTCTC 9 cut(s) 373, 483, 665, 900, 1064, 1332, 1377, 1436, 1457
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 1033
BsnI GGCC 4 cut(s) 129, 175, 690, 714
Bso31I GGTCTC 4 cut(s) 900, 1064, 1436, 1457
Bsp143I GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 1 cut(s) 338
BspANI GGCC 4 cut(s) 129, 175, 690, 714
BspCNI CTCAG 5 cut(s) 190, 346, 924, 944, 1091
BspHI TCATGA 1 cut(s) 1455
BspLI GGNNCC 3 cut(s) 342, 706, 1359
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 3 cut(s) 27, 587, 1480
BspT107I GGYRCC 3 cut(s) 340, 704, 1357
BspTNI GGTCTC 4 cut(s) 900, 1064, 1436, 1457
BsrDI GCAATG 1 cut(s) 1344
BsrI ACTGG 3 cut(s) 153, 631, 1119
BssECI CCNNGG 5 cut(s) 223, 662, 709, 1332, 1419
BssMI GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
Bst2UI CCWGG 4 cut(s) 225, 663, 711, 1421
Bst4CI ACNGT 7 cut(s) 41, 738, 895, 1233, 1291, 1362, 1585
Bst6I CTCTTC 1 cut(s) 1047
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 7 cut(s) 177, 354, 911, 920, 931, 1078, 1629
BstDSI CCRYGG 1 cut(s) 1332
BstF5I GGATG 3 cut(s) 218, 469, 581
BstKTI GATC 6 cut(s) 22, 124, 582, 1470, 1475, 1635
BstMAI GTCTC 9 cut(s) 373, 483, 665, 900, 1064, 1332, 1377, 1436, 1457
BstMBI GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
BstMWI GCNNNNNNNGC 8 cut(s) 139, 148, 335, 364, 367, 373, 1011, 1187
BstNI CCWGG 4 cut(s) 225, 663, 711, 1421
BstNSI RCATGY 4 cut(s) 1088, 1155, 1249, 1381
BstSCI CCNGG 4 cut(s) 223, 661, 709, 1419
BstV1I GCAGC 8 cut(s) 145, 148, 151, 370, 379, 382, 385, 682
BstV2I GAAGAC 3 cut(s) 417, 789, 1597
BstX2I RGATCY 1 cut(s) 1472
BstYI RGATCY 1 cut(s) 1472
BsuRI GGCC 4 cut(s) 129, 175, 690, 714
BtgI CCRYGG 1 cut(s) 1332
BtsCI GGATG 3 cut(s) 218, 469, 581
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 5 cut(s) 46, 615, 624, 1025, 1112
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 1455
CseI GACGC 1 cut(s) 939
Csp6I GTAC 6 cut(s) 341, 705, 739, 1167, 1358, 1381
CspCI CAANNNNNGTGG 2 cut(s) 1255, 1290
CviAII CATG 7 cut(s) 1085, 1152, 1174, 1195, 1246, 1378, 1456
CviQI GTAC 6 cut(s) 341, 705, 739, 1167, 1358, 1381
DdeI CTNAG 7 cut(s) 177, 354, 911, 920, 931, 1078, 1629
DpnI GATC 6 cut(s) 21, 123, 581, 1469, 1474, 1634
DpnII GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
DriI GACNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 2 cut(s) 127, 688
Eam1104I CTCTTC 1 cut(s) 1047
Eam1105I GACNNNNNGTC 1 cut(s) 793
EarI CTCTTC 1 cut(s) 1047
Eco31I GGTCTC 4 cut(s) 900, 1064, 1436, 1457
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 4 cut(s) 223, 661, 709, 1419
EcoT22I ATGCAT 1 cut(s) 1318
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 7 cut(s) 1088, 1155, 1177, 1198, 1249, 1381, 1459
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FaqI GGGAC 1 cut(s) 1033
FatI CATG 7 cut(s) 1084, 1151, 1173, 1194, 1245, 1377, 1455
FauNDI CATATG 2 cut(s) 556, 1163
Fnu4HI GCNGC 9 cut(s) 134, 137, 140, 359, 368, 371, 374, 696, 1651
FokI GGATG 3 cut(s) 205, 456, 588
Fsp4HI GCNGC 9 cut(s) 134, 137, 140, 359, 368, 371, 374, 696, 1651
FspBI CTAG 1 cut(s) 239
GluI GCNGC 9 cut(s) 134, 137, 140, 359, 368, 371, 374, 696, 1651
GsuI CTGGAG 2 cut(s) 1203, 1367
HaeIII GGCC 4 cut(s) 129, 175, 690, 714
HgaI GACGC 1 cut(s) 939
Hin1II CATG 7 cut(s) 1088, 1155, 1177, 1198, 1249, 1381, 1459
HincII GTYRAC 2 cut(s) 659, 1297
HindII GTYRAC 2 cut(s) 659, 1297
HinfI GANTC 7 cut(s) 95, 101, 145, 717, 865, 1021, 1342
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 4 cut(s) 659, 1236, 1284, 1297
Hpy188III TCNNGA 8 cut(s) 308, 461, 727, 905, 1080, 1253, 1346, 1456
Hpy8I GTNNAC 4 cut(s) 659, 1236, 1284, 1297
Hpy99I CGWCG 1 cut(s) 955
HpyAV CCTTC 5 cut(s) 258, 291, 423, 563, 776
HpyCH4III ACNGT 7 cut(s) 41, 738, 895, 1233, 1291, 1362, 1585
HpyCH4IV ACGT 2 cut(s) 741, 852
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 148, 335, 364, 367, 373, 1011, 1187
HpyF3I CTNAG 7 cut(s) 177, 354, 911, 920, 931, 1078, 1629
HpySE526I ACGT 2 cut(s) 741, 852
Hsp92II CATG 7 cut(s) 1088, 1155, 1177, 1198, 1249, 1381, 1459
KpnI GGTACC 3 cut(s) 344, 708, 1361
Kzo9I GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
LmnI GCTCC 1 cut(s) 1351
Lsp1109I GCAGC 8 cut(s) 145, 148, 151, 370, 379, 382, 385, 682
LweI GCATC 1 cut(s) 1607
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 741, 852
MaeIII GTNAC 7 cut(s) 182, 641, 785, 1067, 1199, 1227, 1543
MalI GATC 6 cut(s) 21, 123, 581, 1469, 1474, 1634
MboI GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
MflI RGATCY 1 cut(s) 1472
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 6 cut(s) 408, 540, 746, 1140, 1575, 1642
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 2 cut(s) 1015, 1351
MnlI CCTC 9 cut(s) 49, 52, 186, 292, 414, 566, 920, 1260, 1342
Mox20I TGGCCA 1 cut(s) 690
Mph1103I ATGCAT 1 cut(s) 1318
MroXI GAANNNNTTC 1 cut(s) 1615
MscI TGGCCA 1 cut(s) 690
MseI TTAA 5 cut(s) 510, 842, 1139, 1148, 1319
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 3 cut(s) 935, 1622, 1653
MspR9I CCNGG 4 cut(s) 225, 663, 711, 1421
MvaI CCWGG 4 cut(s) 225, 663, 711, 1421
MwoI GCNNNNNNNGC 8 cut(s) 139, 148, 335, 364, 367, 373, 1011, 1187
NdeI CATATG 2 cut(s) 556, 1163
NdeII GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
NlaIII CATG 7 cut(s) 1088, 1155, 1177, 1198, 1249, 1381, 1459
NlaIV GGNNCC 3 cut(s) 342, 706, 1359
NmuCI GTSAC 2 cut(s) 785, 1227
NsiI ATGCAT 1 cut(s) 1318
NspI RCATGY 4 cut(s) 1088, 1155, 1249, 1381
PagI TCATGA 1 cut(s) 1455
PdmI GAANNNNTTC 1 cut(s) 1615
PfeI GAWTC 5 cut(s) 95, 101, 145, 717, 865
PflMI CCANNNNNTGG 2 cut(s) 224, 686
PkrI GCNGC 9 cut(s) 135, 138, 141, 360, 369, 372, 375, 697, 1652
PleI GAGTC 2 cut(s) 1015, 1350
PpsI GAGTC 2 cut(s) 1015, 1350
Ppu21I YACGTR 1 cut(s) 742
PsiI TTATAA 1 cut(s) 1574
Psp6I CCWGG 4 cut(s) 223, 661, 709, 1419
PspGI CCWGG 4 cut(s) 223, 661, 709, 1419
PspN4I GGNNCC 3 cut(s) 342, 706, 1359
PsuI RGATCY 1 cut(s) 1472
PvuII CAGCTG 3 cut(s) 935, 1622, 1653
RsaI GTAC 6 cut(s) 342, 706, 740, 1168, 1359, 1382
RsaNI GTAC 6 cut(s) 341, 705, 739, 1167, 1358, 1381
SaqAI TTAA 5 cut(s) 510, 842, 1139, 1148, 1319
SatI GCNGC 9 cut(s) 134, 137, 140, 359, 368, 371, 374, 696, 1651
Sau3AI GATC 6 cut(s) 19, 121, 579, 1467, 1472, 1632
SchI GAGTC 2 cut(s) 1015, 1351
ScrFI CCNGG 4 cut(s) 225, 663, 711, 1421
SfaNI GCATC 1 cut(s) 1607
SmlI CTYRAG 2 cut(s) 459, 668
SmoI CTYRAG 2 cut(s) 459, 668
Sse9I AATT 6 cut(s) 408, 540, 746, 1140, 1575, 1642
SsiI CCGC 1 cut(s) 338
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 4 cut(s) 223, 661, 709, 1419
TaaI ACNGT 7 cut(s) 41, 738, 895, 1233, 1291, 1362, 1585
TaiI ACGT 2 cut(s) 744, 855
TaqI TCGA 4 cut(s) 548, 728, 904, 953
TasI AATT 6 cut(s) 408, 540, 746, 1140, 1575, 1642
TatI WGTACW 2 cut(s) 1166, 1380
TfiI GAWTC 5 cut(s) 95, 101, 145, 717, 865
Tru1I TTAA 5 cut(s) 510, 842, 1139, 1148, 1319
Tru9I TTAA 5 cut(s) 510, 842, 1139, 1148, 1319
TscAI CASTG 5 cut(s) 46, 615, 631, 1032, 1119
TseFI GTSAC 2 cut(s) 785, 1227
TseI GCWGC 9 cut(s) 133, 136, 139, 358, 367, 370, 373, 695, 1650
Tsp45I GTSAC 2 cut(s) 785, 1227
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 1520
TspRI CASTG 5 cut(s) 46, 615, 631, 1032, 1119
Van91I CCANNNNNTGG 2 cut(s) 224, 686
XapI RAATTY 2 cut(s) 540, 1642
XceI RCATGY 4 cut(s) 1088, 1155, 1249, 1381
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 1615
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.