Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Reverse (-)

41785213 .. 41787697

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGAGGATCTTCAACAAAAGCTCTTGTTCTCCAGAAGCTTTTACTTGTATGGACGATAGTGGTGGCAACGTTGAGCTCTTTCAGTGATTCTAAATGTGATTTCGAGGCGATCTTCAACTTCGGTGACTCGAATTCTGATACCGGCGGGTTTTGGGCAGCATTTCCCGCACAGTCTGGACCGTTCGGCATGACCTATTTCAAGAAACCGACAGGTCGGGCTTCCGATGGGAGGCTCATTGTTGATTTCTTGGCTCAAGCTCTAGGATTGCCATTCCTGAGTCCATATCTACAATCGATTGGATCCGATTATAGACATGGAGTAAACTTTGCGACATTGGCATCAACCGTGCTTTTGCCAAATACTTCCTTGTTTGTTACCGGAATCAGTCCATTCTCTCTAGCTATCCAGCTCAACCAAATGAAGGCATTCAAGACCCAAGTTGAAGAGTTTCATCACTCCAACTTGGATAAACAAGAACCCAAGAAACTTCCTTCCCCAGATATTTTTGGGAAATCACTCTACATGTTCTATATTGGCCAAAACGATTTTACTTCGAATTTAGCAGCCATTGGTGTAGGAGGAGTGAGGCAATATCTTCCTCAGGTGGTCTCCCAAATTGTTGGTACGGTCAGGGAGCTATATGCTTTAGGAGGGCGTGCATTTCTGGTACTTAATCTAGCACCGGTTGGTTGCTATCCCTCGTTTCTGGTAGGGCTTCCCCGTTCTGAACTCGATGCTTTTGGATGCTCGACTTCTTACAACAATGCAGTACAAGACTACAACAACATGCTTAAAGAGACGCTTGCACAAACTAGAGGCTCTCTTCCAAATGCTTCTCTAATATATGTGGACTCCTCATCTGCTTTGCTAGAGCTCTTTAGACACCCCACAATACATGGGTTCAAATATGGTACCAAATCATGTTGTGGACATGGAGGTGGTGCCTACAATTATGACCGTCAGGTTTATTGTGGAAATACAAAGGTGATCAATGGGAGCACTGTGACTGCAACAGCTTGTGATGATCCATACAACTATGTAAGCTGGGATGGAATCCATGCCACTGAAGCTGCAAACAAGCTTGTTACCTGGGCTATTCTCAACGGCTCTTATTTTGACCCACCTTTTCCTCTTCACCAACTTTGTGACCTCTACCCTATAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

389

Amino Acids

42.33

Weight (kDa)

6.23

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 363	1.4e-44	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	914
AccB1I	GGYRCC	2 cut(s)	914, 944
AciI	CCGC	2 cut(s)	147, 168
AclI	AACGTT	1 cut(s)	71
AclWI	GGATC	4 cut(s)	16, 297, 310, 1022
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	133, 559
AcuI	CTGAAG	1 cut(s)	1089
AfaI	GTAC	4 cut(s)	628, 672, 774, 916
AfiI	CCNNNNNNNGG	2 cut(s)	231, 424
AflIII	ACRYGT	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	685
AgsI	TTSAA	6 cut(s)	15, 118, 202, 433, 446, 907
AjnI	CCWGG	1 cut(s)	1091
Alw21I	GWGCWC	3 cut(s)	80, 879, 1004
Alw26I	GTCTC	2 cut(s)	616, 794
AlwI	GGATC	4 cut(s)	16, 297, 310, 1022
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	158, 566, 1073
ApoI	RAATTY	2 cut(s)	133, 559
AsiGI	ACCGGT	1 cut(s)	685
Asp700I	GAANNNNTTC	2 cut(s)	428, 450
Asp718I	GGTACC	1 cut(s)	914
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	137, 1000, 1130
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	603
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	914, 944
BanII	GRGCYC	2 cut(s)	80, 879
Bbv12I	GWGCWC	3 cut(s)	80, 879, 1004
BbvI	GCAGC	3 cut(s)	170, 578, 1060
BccI	CCATC	2 cut(s)	221, 1046
BceAI	ACGGC	1 cut(s)	1123
BciT130I	CCWGG	1 cut(s)	1093
BclI	TGATCA	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	616, 794
BfaI	CTAG	5 cut(s)	263, 401, 680, 816, 872
BfmI	CTRYAG	1 cut(s)	1161
BisI	GCNGC	3 cut(s)	159, 567, 1074
BlsI	GCNGC	3 cut(s)	160, 568, 1075
Bme1390I	CCNGG	1 cut(s)	1093
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	304, 916, 946
BmrFI	CCNGG	1 cut(s)	1093
BmsI	GCATC	3 cut(s)	350, 727, 737
BpmI	CTGGAG	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	1092
BsaWI	WCCGGW	2 cut(s)	380, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 424
Bse118I	RCCGGY	2 cut(s)	143, 685
Bse21I	CCTNAGG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	1093
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	1092
BseGI	GGATG	2 cut(s)	752, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	231, 424
BseMII	CTCAG	2 cut(s)	269, 617
BseRI	GAGGAG	2 cut(s)	597, 847
BseXI	GCAGC	3 cut(s)	170, 578, 1060
BseYI	CCCAGC	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	2 cut(s)	914, 944
BshTI	ACCGGT	1 cut(s)	685
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	3 cut(s)	80, 879, 1004
BsiSI	CCGG	3 cut(s)	144, 381, 686
BslI	CCNNNNNNNGG	2 cut(s)	231, 424
BsmAI	GTCTC	2 cut(s)	616, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	616
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	3 cut(s)	80, 879, 1004
Bsp143I	GATC	5 cut(s)	8, 111, 302, 990, 1027
BspACI	CCGC	2 cut(s)	147, 168
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	270, 616
BspDI	ATCGAT	1 cut(s)	296
BspLI	GGNNCC	3 cut(s)	304, 916, 946
BspPI	GGATC	4 cut(s)	16, 297, 310, 1022
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	2 cut(s)	914, 944
BspTNI	GGTCTC	1 cut(s)	616
BsrFI	RCCGGY	2 cut(s)	143, 685
BssAI	RCCGGY	2 cut(s)	143, 685
BssECI	CCNNGG	1 cut(s)	1092
BssMI	GATC	5 cut(s)	8, 111, 302, 990, 1027
Bst2UI	CCWGG	1 cut(s)	1093
Bst4CI	ACNGT	6 cut(s)	174, 183, 349, 631, 962, 1006
Bst6I	CTCTTC	3 cut(s)	441, 831, 1140
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	660, 807
BstDEI	CTNAG	2 cut(s)	278, 603
BstF5I	GGATG	2 cut(s)	752, 1057
BstKTI	GATC	5 cut(s)	11, 114, 305, 993, 1030
BstMAI	GTCTC	2 cut(s)	616, 794
BstMBI	GATC	5 cut(s)	8, 111, 302, 990, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 338, 1070
BstNI	CCWGG	1 cut(s)	1093
BstNSI	RCATGY	2 cut(s)	529, 793
BstSCI	CCNGG	1 cut(s)	1091
BstSFI	CTRYAG	1 cut(s)	1161
BstV1I	GCAGC	3 cut(s)	170, 578, 1060
BstX2I	RGATCY	2 cut(s)	8, 302
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	2 cut(s)	8, 302
Bsu15I	ATCGAT	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	540
BsuTUI	ATCGAT	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	752, 1057
BtsIMutI	CAGTG	3 cut(s)	91, 1002, 1065
Cac8I	GCNNGC	2 cut(s)	660, 807
Cfr10I	RCCGGY	2 cut(s)	143, 685
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	296
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	4 cut(s)	627, 671, 773, 915
CspAI	ACCGGT	1 cut(s)	685
CviAII	CATG	8 cut(s)	190, 317, 526, 790, 899, 924, 935, 1061
CviQI	GTAC	4 cut(s)	627, 671, 773, 915
DdeI	CTNAG	2 cut(s)	278, 603
DpnI	GATC	5 cut(s)	10, 113, 304, 992, 1029
DpnII	GATC	5 cut(s)	8, 111, 302, 990, 1027
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	441, 831, 1140
EarI	CTCTTC	3 cut(s)	441, 831, 1140
Ecl136II	GAGCTC	2 cut(s)	78, 877
Eco24I	GRGCYC	2 cut(s)	80, 879
Eco31I	GGTCTC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	2 cut(s)	78, 877
Eco57I	CTGAAG	1 cut(s)	1089
Eco81I	CCTNAGG	1 cut(s)	603
EcoICRI	GAGCTC	2 cut(s)	78, 877
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	1091
EcoT38I	GRGCYC	2 cut(s)	80, 879
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	8 cut(s)	193, 320, 529, 793, 902, 927, 938, 1064
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FatI	CATG	8 cut(s)	189, 316, 525, 789, 898, 923, 934, 1060
FauI	CCCGC	2 cut(s)	140, 175
FbaI	TGATCA	1 cut(s)	990
Fnu4HI	GCNGC	3 cut(s)	159, 567, 1074
FokI	GGATG	2 cut(s)	759, 1064
FriOI	GRGCYC	2 cut(s)	80, 879
Fsp4HI	GCNGC	3 cut(s)	159, 567, 1074
FspBI	CTAG	5 cut(s)	263, 401, 680, 816, 872
GluI	GCNGC	3 cut(s)	159, 567, 1074
GsaI	CCCAGC	1 cut(s)	1051
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	3 cut(s)	144, 381, 686
HgaI	GACGC	1 cut(s)	811
Hin1II	CATG	8 cut(s)	193, 320, 529, 793, 902, 927, 938, 1064
HindIII	AAGCTT	2 cut(s)	38, 1082
HinfI	GANTC	6 cut(s)	89, 128, 280, 384, 854, 1056
HpaII	CCGG	3 cut(s)	144, 381, 686
HphI	GGTGA	3 cut(s)	137, 1000, 1130
Hpy166II	GTNNAC	3 cut(s)	325, 853, 932
Hpy188I	TCNGA	4 cut(s)	139, 226, 307, 730
Hpy188III	TCNNGA	5 cut(s)	34, 177, 202, 277, 433
Hpy8I	GTNNAC	3 cut(s)	325, 853, 932
HpyAV	CCTTC	2 cut(s)	418, 504
HpyCH4III	ACNGT	6 cut(s)	174, 183, 349, 631, 962, 1006
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	662, 770, 809, 1013, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 338, 1070
HpyF3I	CTNAG	2 cut(s)	278, 603
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	8 cut(s)	193, 320, 529, 793, 902, 927, 938, 1064
KpnI	GGTACC	1 cut(s)	918
Ksp22I	TGATCA	1 cut(s)	990
Kzo9I	GATC	5 cut(s)	8, 111, 302, 990, 1027
LmnI	GCTCC	2 cut(s)	637, 999
Lsp1109I	GCAGC	3 cut(s)	170, 578, 1060
LweI	GCATC	3 cut(s)	350, 727, 737
MaeI	CTAG	5 cut(s)	263, 401, 680, 816, 872
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	5 cut(s)	125, 376, 1006, 1087, 1148
MalI	GATC	5 cut(s)	10, 113, 304, 992, 1029
MboI	GATC	5 cut(s)	8, 111, 302, 990, 1027
MboII	GAAGA	6 cut(s)	3, 106, 458, 590, 818, 1127
MflI	RGATCY	2 cut(s)	8, 302
MhlI	GDGCHC	3 cut(s)	80, 879, 1004
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	4 cut(s)	133, 559, 618, 952
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	3 cut(s)	122, 289, 848
MmeI	TCCRAC	1 cut(s)	486
Mox20I	TGGCCA	1 cut(s)	540
MroXI	GAANNNNTTC	2 cut(s)	428, 450
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	2 cut(s)	675, 795
MslI	CAYNNNNRTG	1 cut(s)	939
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	3 cut(s)	144, 381, 686
MspR9I	CCNGG	1 cut(s)	1093
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	3 cut(s)	167, 338, 1070
NdeII	GATC	5 cut(s)	8, 111, 302, 990, 1027
NlaIII	CATG	8 cut(s)	193, 320, 529, 793, 902, 927, 938, 1064
NlaIV	GGNNCC	3 cut(s)	304, 916, 946
NmuCI	GTSAC	3 cut(s)	125, 1006, 1148
NspI	RCATGY	2 cut(s)	529, 793
NspV	TTCGAA	1 cut(s)	557
PciI	ACATGT	1 cut(s)	525
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	2 cut(s)	428, 450
PfeI	GAWTC	3 cut(s)	89, 384, 1056
PinAI	ACCGGT	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	160, 568, 1075
PleI	GAGTC	3 cut(s)	122, 288, 848
PpsI	GAGTC	3 cut(s)	122, 288, 848
PscI	ACATGT	1 cut(s)	525
Psp124BI	GAGCTC	2 cut(s)	80, 879
Psp1406I	AACGTT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	1091
PspFI	CCCAGC	1 cut(s)	1047
PspGI	CCWGG	1 cut(s)	1091
PspN4I	GGNNCC	3 cut(s)	304, 916, 946
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	8, 302
RsaI	GTAC	4 cut(s)	628, 672, 774, 916
RsaNI	GTAC	4 cut(s)	627, 671, 773, 915
RseI	CAYNNNNRTG	1 cut(s)	939
SacI	GAGCTC	2 cut(s)	80, 879
SaqAI	TTAA	2 cut(s)	675, 795
SatI	GCNGC	3 cut(s)	159, 567, 1074
Sau3AI	GATC	5 cut(s)	8, 111, 302, 990, 1027
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	122, 289, 848
ScrFI	CCNGG	1 cut(s)	1093
SduI	GDGCHC	3 cut(s)	80, 879, 1004
SfaNI	GCATC	3 cut(s)	350, 727, 737
SfcI	CTRYAG	1 cut(s)	1161
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	4 cut(s)	133, 559, 618, 952
SsiI	CCGC	2 cut(s)	147, 168
SspMI	CTAG	5 cut(s)	263, 401, 680, 816, 872
SstI	GAGCTC	2 cut(s)	80, 879
StyD4I	CCNGG	1 cut(s)	1091
TaaI	ACNGT	6 cut(s)	174, 183, 349, 631, 962, 1006
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	6 cut(s)	105, 131, 296, 557, 735, 752
TasI	AATT	4 cut(s)	133, 559, 618, 952
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	89, 384, 1056
Tru1I	TTAA	2 cut(s)	675, 795
Tru9I	TTAA	2 cut(s)	675, 795
TscAI	CASTG	3 cut(s)	91, 1009, 1072
TseFI	GTSAC	3 cut(s)	125, 1006, 1148
TseI	GCWGC	3 cut(s)	158, 566, 1073
Tsp45I	GTSAC	3 cut(s)	125, 1006, 1148
TspDTI	ATGAA	2 cut(s)	437, 443
TspRI	CASTG	3 cut(s)	91, 1009, 1072
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	133, 559
XceI	RCATGY	2 cut(s)	529, 793
XmnI	GAANNNNTTC	2 cut(s)	428, 450
XspI	CTAG	5 cut(s)	263, 401, 680, 816, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.