Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Reverse (-)

13930382 .. 13935091

Gene Structure 4710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAGAACTCGGTGTCGGATCGCAGTTTTTACATTGACAGTGAAGAAGAAGATGATGAGGAGAAGGACAACAAAAGCATAGAAGACGCGAATGATTCTGATTCTTCGGGTTCGGAAGCCGAGCACCGCCGGCAGCAGCAGATTCAGCCCAGTTCTTACAATACCCAATGGCCTCAGAGTTACAGGCAATCCATTGACCTGTATAGTAGTGTACCATCCCCTGGAATTGGGTTTCTAGGCACTCCTTCACTGTCAAGATTAGGAAGCTCGTTTCTTTCCTCATCACTAACGAGAAGGCACACTCCCGAAACATTACCTTTTTTGGCAAAACCTCCGGTACCAACCCTTGCTGAGCAACAACAGCAGAGACAAAGTTCTCATTCTCTACTTCCACCAATTCCTTCAAGGAGGTCTTCAATAAGAAAAGATGATAAATCCAGGATTTCTCATGAACATCATCCAGTGCCTCGCCACAGCTCATTCGCACAAGCTGTGGTTAATGTGCTGTCGTTCTACACTGGATTGCTTCTGCGTTACTGCTTGGATAGTCAACCTGGGCTTGAGACTTACCCAGACATTGGCCAAGCTGCATTTGGTAACCCTGGCCGAATTGCTATCTCGATAGTACTGTACGTTGAATTATATGCTTGTTGCATAGAATATATAATCTTGGAGGGTGACAACTTGTCTTCGCTATTCCCAAATGCACACCTGAACTTGGGTGGATTTGAGTTAAATGCACACGTTTTGTTTGCAATTTTGACCGCCCTTGCTGTTCTACCTACTGTTTGGCTTCGAGACCTCAGTGTTCTTAGCTATATCTCAGCTGGTGGAGTTATTGCGTCGATCTTGGTAGTGCTTTGCTTGTTTTGGGTTGGTCTAGTAGATGGTGTTGGCTTTGAGAGCAAAGGGACTCCACTGAACCTTGCAACTCTTCCTGTTGCTATGGGTCTCTATGGTTACTGCTACTCAGGACACGCTGTATTCCCAAACATTTATACTTCATTGGAAAAACCAAACCAATACCCTGCAATTCTCTTAACATGCTTTTGCATATGTACTTTCATGTATGCTGGAGTTGCTGTCATGGGTTACACAATGTTTGGAGAAGCAACATTGTCACAGTTCACTCTCAACATGCCTCACAATTTGGTTGCCTCAAAGATCGCTGTGTGGACTACGGTAGTCAACCCATTTACCAAATATCCTTTGTTGCAAGTTACGCAGATATTATATGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

414

Amino Acids

45.69

Weight (kDa)

5.65

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	160 - 404	6.5e-39	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	2 cut(s)	221, 578
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	127, 765
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	580, 604
AfaI	GTAC	5 cut(s)	213, 339, 627, 632, 1060
AfiI	CCNNNNNNNGG	4 cut(s)	221, 227, 578, 718
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	3 cut(s)	405, 417, 638
AhdI	GACNNNNNGTC	1 cut(s)	685
AjnI	CCWGG	4 cut(s)	220, 437, 553, 601
AluBI	AGCT	6 cut(s)	267, 477, 491, 587, 816, 827
AluI	AGCT	6 cut(s)	267, 477, 491, 587, 816, 827
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	4 cut(s)	361, 557, 792, 956
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	3 cut(s)	170, 580, 604
ApeKI	GCWGC	3 cut(s)	133, 136, 587
Asp718I	GGTACC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	689
BalI	TGGCCA	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	3 cut(s)	90, 405, 681
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	145, 148, 574
BccI	CCATC	2 cut(s)	223, 881
BciT130I	CCWGG	4 cut(s)	222, 439, 555, 603
BcoDI	GTCTC	4 cut(s)	361, 557, 792, 956
BfaI	CTAG	2 cut(s)	236, 881
BisI	GCNGC	3 cut(s)	134, 137, 588
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	135, 138, 589
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	4 cut(s)	222, 439, 555, 603
BmeRI	GACNNNNNGTC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	4 cut(s)	222, 439, 555, 603
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	3 cut(s)	90, 405, 681
BpmI	CTGGAG	1 cut(s)	1095
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	581
BsaI	GGTCTC	2 cut(s)	792, 956
BsaJI	CCNNGG	3 cut(s)	220, 554, 601
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 227, 578, 718
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	3 cut(s)	150, 461, 523
BseBI	CCWGG	4 cut(s)	222, 439, 555, 603
BseDI	CCNNGG	3 cut(s)	220, 554, 601
BseGI	GGATG	2 cut(s)	215, 457
BseLI	CCNNNNNNNGG	4 cut(s)	221, 227, 578, 718
BseMII	CTCAG	5 cut(s)	188, 342, 817, 837, 984
BseNI	ACTGG	3 cut(s)	150, 461, 523
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	145, 148, 574
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	172, 582, 606
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	130, 335
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	4 cut(s)	221, 227, 578, 718
BsmAI	GTCTC	4 cut(s)	361, 557, 792, 956
BsmFI	GGGAC	1 cut(s)	925
BsnI	GGCC	3 cut(s)	172, 582, 606
Bso31I	GGTCTC	2 cut(s)	792, 956
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	19, 846, 1164
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	127, 765
BspANI	GGCC	3 cut(s)	172, 582, 606
BspCNI	CTCAG	5 cut(s)	187, 343, 816, 836, 983
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	2 cut(s)	792, 956
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	3 cut(s)	150, 461, 523
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	220, 554, 601
BssMI	GATC	3 cut(s)	19, 846, 1164
Bst2UI	CCWGG	4 cut(s)	222, 439, 555, 603
Bst4CI	ACNGT	6 cut(s)	41, 252, 630, 787, 1125, 1183
Bst6I	CTCTTC	1 cut(s)	939
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	6 cut(s)	174, 351, 803, 812, 823, 970
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	2 cut(s)	215, 457
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	22, 849, 1167
BstMAI	GTCTC	4 cut(s)	361, 557, 792, 956
BstMBI	GATC	3 cut(s)	19, 846, 1164
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 145, 361, 903, 1079, 1222
BstNI	CCWGG	4 cut(s)	222, 439, 555, 603
BstNSI	RCATGY	2 cut(s)	1047, 1141
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	4 cut(s)	220, 437, 553, 601
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	145, 148, 574
BstV2I	GAAGAC	3 cut(s)	90, 405, 681
BsuRI	GGCC	3 cut(s)	172, 582, 606
BtsCI	GGATG	2 cut(s)	215, 457
BtsIMutI	CAGTG	6 cut(s)	46, 248, 468, 516, 811, 917
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	129
CseI	GACGC	2 cut(s)	95, 831
Csp6I	GTAC	5 cut(s)	212, 338, 626, 631, 1059
CviAII	CATG	5 cut(s)	449, 1044, 1066, 1087, 1138
CviQI	GTAC	5 cut(s)	212, 338, 626, 631, 1059
DdeI	CTNAG	6 cut(s)	174, 351, 803, 812, 823, 970
DpnI	GATC	3 cut(s)	21, 848, 1166
DpnII	GATC	3 cut(s)	19, 846, 1164
DriI	GACNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	2 cut(s)	580, 604
Eam1104I	CTCTTC	1 cut(s)	939
Eam1105I	GACNNNNNGTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	939
Eco31I	GGTCTC	2 cut(s)	792, 956
Eco91I	GGTNACC	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	4 cut(s)	220, 437, 553, 601
FaeI	CATG	5 cut(s)	452, 1047, 1069, 1090, 1141
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	5 cut(s)	448, 1043, 1065, 1086, 1137
FauNDI	CATATG	1 cut(s)	1055
Fnu4HI	GCNGC	3 cut(s)	134, 137, 588
FokI	GGATG	2 cut(s)	202, 444
Fsp4HI	GCNGC	3 cut(s)	134, 137, 588
FspBI	CTAG	2 cut(s)	236, 881
GluI	GCNGC	3 cut(s)	134, 137, 588
GsuI	CTGGAG	1 cut(s)	1095
HaeIII	GGCC	3 cut(s)	172, 582, 606
HapII	CCGG	2 cut(s)	130, 335
HgaI	GACGC	2 cut(s)	95, 831
Hin1II	CATG	5 cut(s)	452, 1047, 1069, 1090, 1141
HincII	GTYRAC	3 cut(s)	551, 1189, 1240
HindII	GTYRAC	3 cut(s)	551, 1189, 1240
HinfI	GANTC	4 cut(s)	95, 101, 142, 913
HpaI	GTTAAC	1 cut(s)	1240
HpaII	CCGG	2 cut(s)	130, 335
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	6 cut(s)	212, 551, 1128, 1176, 1189, 1240
Hpy188I	TCNGA	4 cut(s)	19, 100, 115, 177
Hpy188III	TCNNGA	6 cut(s)	255, 305, 449, 619, 797, 972
Hpy8I	GTNNAC	6 cut(s)	212, 551, 1128, 1176, 1189, 1240
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	58, 255, 288, 411
HpyCH4III	ACNGT	6 cut(s)	41, 252, 630, 787, 1125, 1183
HpyCH4IV	ACGT	2 cut(s)	633, 744
HpyCH4V	TGCA	9 cut(s)	590, 654, 707, 740, 755, 929, 1031, 1053, 1216
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 145, 361, 903, 1079, 1222
HpyF3I	CTNAG	6 cut(s)	174, 351, 803, 812, 823, 970
HpySE526I	ACGT	2 cut(s)	633, 744
Hsp92II	CATG	5 cut(s)	452, 1047, 1069, 1090, 1141
KpnI	GGTACC	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	1240
Kzo9I	GATC	3 cut(s)	19, 846, 1164
Lsp1109I	GCAGC	3 cut(s)	145, 148, 574
MaeI	CTAG	2 cut(s)	236, 881
MaeII	ACGT	2 cut(s)	633, 744
MaeIII	GTNAC	8 cut(s)	179, 533, 596, 677, 959, 1091, 1119, 1219
MalI	GATC	3 cut(s)	21, 848, 1166
MboI	GATC	3 cut(s)	19, 846, 1164
MboII	GAAGA	9 cut(s)	16, 56, 59, 62, 95, 96, 405, 681, 926
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	7 cut(s)	225, 396, 609, 638, 756, 1032, 1147
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	907
Mox20I	TGGCCA	1 cut(s)	582
MroNI	GCCGGC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	4 cut(s)	498, 734, 1040, 1239
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	2 cut(s)	130, 335
MspR9I	CCNGG	4 cut(s)	222, 439, 555, 603
MvaI	CCWGG	4 cut(s)	222, 439, 555, 603
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	6 cut(s)	130, 145, 361, 903, 1079, 1222
NaeI	GCCGGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	1055
NdeII	GATC	3 cut(s)	19, 846, 1164
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	452, 1047, 1069, 1090, 1141
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	677, 1119
NspI	RCATGY	2 cut(s)	1047, 1141
PagI	TCATGA	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	95, 101, 142
PflMI	CCANNNNNTGG	2 cut(s)	221, 578
PfoI	TCCNGGA	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	135, 138, 589
PleI	GAGTC	1 cut(s)	907
PpsI	GAGTC	1 cut(s)	907
Psp6I	CCWGG	4 cut(s)	220, 437, 553, 601
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	4 cut(s)	220, 437, 553, 601
PspN4I	GGNNCC	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	5 cut(s)	213, 339, 627, 632, 1060
RsaNI	GTAC	5 cut(s)	212, 338, 626, 631, 1059
SaqAI	TTAA	4 cut(s)	498, 734, 1040, 1239
SatI	GCNGC	3 cut(s)	134, 137, 588
Sau3AI	GATC	3 cut(s)	19, 846, 1164
ScaI	AGTACT	1 cut(s)	627
SchI	GAGTC	1 cut(s)	907
ScrFI	CCNGG	4 cut(s)	222, 439, 555, 603
SduI	GDGCHC	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	7 cut(s)	225, 396, 609, 638, 756, 1032, 1147
SsiI	CCGC	2 cut(s)	127, 765
SspMI	CTAG	2 cut(s)	236, 881
StyD4I	CCNGG	4 cut(s)	220, 437, 553, 601
TaaI	ACNGT	6 cut(s)	41, 252, 630, 787, 1125, 1183
TaiI	ACGT	2 cut(s)	636, 747
TaqI	TCGA	3 cut(s)	620, 796, 845
TasI	AATT	7 cut(s)	225, 396, 609, 638, 756, 1032, 1147
TatI	WGTACW	2 cut(s)	625, 1058
TfiI	GAWTC	3 cut(s)	95, 101, 142
Tru1I	TTAA	4 cut(s)	498, 734, 1040, 1239
Tru9I	TTAA	4 cut(s)	498, 734, 1040, 1239
TscAI	CASTG	6 cut(s)	46, 255, 468, 523, 811, 924
TseFI	GTSAC	2 cut(s)	677, 1119
TseI	GCWGC	3 cut(s)	133, 136, 587
Tsp45I	GTSAC	2 cut(s)	677, 1119
TspDTI	ATGAA	4 cut(s)	17, 465, 993, 1054
TspRI	CASTG	6 cut(s)	46, 255, 468, 523, 811, 924
Van91I	CCANNNNNTGG	2 cut(s)	221, 578
XceI	RCATGY	2 cut(s)	1047, 1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XspI	CTAG	2 cut(s)	236, 881
ZrmI	AGTACT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.