AT3G54830

amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20311901 .. 20315887
3987 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54830.2

Sequence Viewer

Length: 1641 bp
ATGAATCACTCCACTTCTGACCAGAGCCTCTACATCGAGAGTGATGATGGAGATGACGAGAGAAAACACTTGTCCGACGATGAAGACGACGATGGAACTCTTTCTGATACTTCTGACGCTTACAATCAAAACCAACATCATCTGTCTAAAGCTAGCCCATACTCAACGGCATGGCCTAAGAGTTATAGGCAATCGATTGATATGTTTGGAAGTGTACCATCACCAAATTTGGGTTTTCTTGCTAATTCTTCTATGTCGAGAAGAGGAAGCTCATTCATGTCTTCGACACTGACAAGAAGACATACTCCAGAATCATTACCTTGTGTTACAAAGCCTCTCCTAGAAGATGAAGAAGCACCAAAACATAAACTTAGCACTCATTCTTTGCTTCCGTCGAAACCATCGTCATCCATGGTGGTGTCTCATGATATGGGAATCTCCAATGATAGCTCCTTTGGACAGGCTGTTCTTAATGGAGTGAATGTTTTATGTGGGGTTGGAATATTGTCAACACCATATGCTGTGAAGGAAGGAGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTACACCGGTTTGCTTCTGCGGTACTGCCTCGACAGCCACCCCGATGTCCAGACCTATCCTGATATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCCGTAATACTCTATATGGAGTTATATGCTATGAGTGTTGAATACATAATATTGGAAGGTGATAATCTTTCATCAATGTTTCCAAATGCTAGTCTAAGTATTGGAGGGTTTCACTTAGATGCGCCTCGTCTATTTGCTCTGCTTACCACCCTCGCTGTTCTCCCAACCGTTTGGCTTCGAGATCTCAGCGTACTAAGTTACATTTCAGCTGGAGGGGTGATTGCATCAGTGTTGGTGGTTTTGTGCTTGTTTTGGGTTGGTTTGGTTGATGATGTTGGTATTCACAGCAAAGGAACTCCACTAAACCTCGCAACATTACCGGTTTCTGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTTTTCCCTAATATTTACACTTCAATGGCCAAACCATCTCAATTTTCTGCTGTTCTCTTGGCATCTTTTGGAATTTGTACTCTTATGTATGCGGGTGTTGCTGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACAGTTTACTCTTAACTTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACAGTTGTTAATCCATTTACCAAATATCCTTTATCAAGAAATATTCAGAGACTTTTCATTTATCTCTTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACTATGGGAAGTCACGTTTCTACGCAATCGCCATTAGAAGTGCATTAGCCATCTCTACTCTGCTCGTTGGTCTTGCGATTCCCTTCTTCGGCCTTGTCATGTCACTGATTGGATCATTCTTGACAATGCTCATTTTTCTGGACACAGACGCTGATACTACCGCCAGCTTGTTTCTTGAGCATCTTAAGGAAAAAAGTAACCCCTACTCAGGTGACAATCTGTATCTTAATTATGACAGTAGGAGCAGTATGTTCAGTCATTGGCACATATTCAGCCCTTGCAAAGATCATTGA

Protein Analysis

546

Amino Acids

59.74

Weight (kDa)

5.36

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 150 - 494 4.8e-59 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 162 - 361 4.8e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 601, 657, 676, 1142, 1509
AclWI GGATC 1 cut(s) 1468
AcoI YGGCCR 3 cut(s) 649, 673, 1077
AcsI RAATTY 2 cut(s) 226, 1122
AfaI GTAC 4 cut(s) 216, 605, 879, 1129
AfiI CCNNNNNNNGG 5 cut(s) 230, 647, 682, 1436, 1556
AflII CTTAAG 1 cut(s) 1532
AgeI ACCGGT 2 cut(s) 587, 1006
AgsI TTSAA 2 cut(s) 728, 1074
AjnI CCWGG 1 cut(s) 681
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 152, 270, 450, 896, 1515
AluI AGCT 5 cut(s) 152, 270, 450, 896, 1515
Alw26I GTCTC 3 cut(s) 426, 691, 1291
AlwI GGATC 1 cut(s) 1468
AlwNI CAGNNNCTG 1 cut(s) 1499
AoxI GGCC 5 cut(s) 173, 649, 673, 1077, 1438
ApoI RAATTY 2 cut(s) 226, 1122
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsiGI ACCGGT 2 cut(s) 587, 1006
Asp700I GAANNNNTTC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 213, 758, 916, 1571
AsuNHI GCTAGC 1 cut(s) 152
BalI TGGCCA 2 cut(s) 651, 1079
BbsI GAAGAC 3 cut(s) 90, 273, 304
BccI CCATC 8 cut(s) 41, 86, 226, 409, 531, 1093, 1351, 1406
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 426, 691, 1291
BfaI CTAG 3 cut(s) 153, 341, 777
BfmI CTRYAG 2 cut(s) 1014, 1248
BfrI CTTAAG 1 cut(s) 1532
BglII AGATCT 1 cut(s) 868
BisI GCNGC 2 cut(s) 657, 676
BlsI GCNGC 2 cut(s) 658, 677
Bme1390I CCNGG 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 6 cut(s) 687, 796, 920, 1121, 1235, 1537
BmtI GCTAGC 1 cut(s) 156
BpiI GAAGAC 3 cut(s) 90, 273, 304
BpmI CTGGAG 2 cut(s) 291, 918
BpuEI CTTGAG 3 cut(s) 1197, 1349, 1544
Bsa29I ATCGAT 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 2 cut(s) 587, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 647, 682, 1436, 1556
Bse118I RCCGGY 3 cut(s) 587, 671, 1006
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 407, 542, 678
BseLI CCNNNNNNNGG 5 cut(s) 230, 647, 682, 1436, 1556
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 3 cut(s) 886, 1053, 1569
BseRI GAGGAG 1 cut(s) 1346
BseX3I CGGCCG 1 cut(s) 673
Bsh1285I CGRYCG 1 cut(s) 676
BshFI GGCC 5 cut(s) 175, 651, 675, 1079, 1440
BshTI ACCGGT 2 cut(s) 587, 1006
BshVI ATCGAT 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 676
BsiSI CCGG 3 cut(s) 588, 672, 1007
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 5 cut(s) 230, 647, 682, 1436, 1556
BsmAI GTCTC 3 cut(s) 426, 691, 1291
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 5 cut(s) 175, 651, 675, 1079, 1440
Bso31I GGTCTC 1 cut(s) 691
Bsp143I GATC 3 cut(s) 868, 1460, 1633
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 5 cut(s) 601, 657, 676, 1142, 1509
BspANI GGCC 5 cut(s) 175, 651, 675, 1079, 1440
BspCNI CTCAG 3 cut(s) 885, 1052, 1568
BspDI ATCGAT 1 cut(s) 194
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 1468
BspTI CTTAAG 1 cut(s) 1532
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 1326
BsrFI RCCGGY 3 cut(s) 587, 671, 1006
BssAI RCCGGY 3 cut(s) 587, 671, 1006
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 868, 1460, 1633
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 4 cut(s) 856, 1194, 1252, 1586
Bst6I CTCTTC 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 1532
BstC8I GCNNGC 2 cut(s) 154, 1513
BstDEI CTNAG 9 cut(s) 177, 371, 782, 802, 872, 881, 1039, 1230, 1555
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 407, 542, 678
BstHHI GCGC 1 cut(s) 811
BstKTI GATC 3 cut(s) 871, 1463, 1636
BstMAI GTCTC 3 cut(s) 426, 691, 1291
BstMBI GATC 3 cut(s) 868, 1460, 1633
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 2 cut(s) 615, 1148
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 1014, 1248
BstV2I GAAGAC 3 cut(s) 90, 273, 304
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 858
BstYI RGATCY 1 cut(s) 868
BstZI CGGCCG 1 cut(s) 673
Bsu15I ATCGAT 1 cut(s) 194
BsuRI GGCC 5 cut(s) 175, 651, 675, 1079, 1440
BsuTUI ATCGAT 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 3 cut(s) 407, 542, 678
BtsIMutI CAGTG 3 cut(s) 287, 921, 1451
Cac8I GCNNGC 2 cut(s) 154, 1513
CaiI CAGNNNCTG 1 cut(s) 1499
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 811
Cfr10I RCCGGY 3 cut(s) 587, 671, 1006
ClaI ATCGAT 1 cut(s) 194
CseI GACGC 2 cut(s) 125, 1505
Csp6I GTAC 4 cut(s) 215, 604, 878, 1128
CspAI ACCGGT 2 cut(s) 587, 1006
CviAII CATG 8 cut(s) 171, 277, 412, 425, 653, 1046, 1168, 1447
CviQI GTAC 4 cut(s) 215, 604, 878, 1128
DdeI CTNAG 9 cut(s) 177, 371, 782, 802, 872, 881, 1039, 1230, 1555
DpnI GATC 3 cut(s) 870, 1462, 1635
DpnII GATC 3 cut(s) 868, 1460, 1633
EaeI YGGCCR 3 cut(s) 649, 673, 1077
EagI CGGCCG 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
EclXI CGGCCG 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 691
Eco52I CGGCCG 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 8 cut(s) 174, 280, 415, 428, 656, 1049, 1171, 1450
FaqI GGGAC 1 cut(s) 558
FatI CATG 8 cut(s) 170, 276, 411, 424, 652, 1045, 1167, 1446
FauI CCCGC 1 cut(s) 1135
FauNDI CATATG 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 657, 676
FokI GGATG 3 cut(s) 394, 549, 665
Fsp4HI GCNGC 2 cut(s) 657, 676
FspBI CTAG 3 cut(s) 153, 341, 777
GlaI GCGC 1 cut(s) 810
GluI GCNGC 2 cut(s) 657, 676
GsuI CTGGAG 2 cut(s) 291, 918
HaeIII GGCC 5 cut(s) 175, 651, 675, 1079, 1440
HapII CCGG 3 cut(s) 588, 672, 1007
HgaI GACGC 2 cut(s) 125, 1505
HhaI GCGC 1 cut(s) 811
Hin1II CATG 8 cut(s) 174, 280, 415, 428, 656, 1049, 1171, 1450
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 8 cut(s) 4, 311, 435, 1020, 1178, 1187, 1324, 1426
HpaII CCGG 3 cut(s) 588, 672, 1007
HphI GGTGA 4 cut(s) 213, 758, 916, 1571
Hpy166II GTNNAC 4 cut(s) 215, 510, 1197, 1245
Hpy188I TCNGA 5 cut(s) 19, 76, 106, 115, 1296
Hpy8I GTNNAC 4 cut(s) 215, 510, 1197, 1245
Hpy99I CGWCG 3 cut(s) 80, 92, 397
HpyAV CCTTC 4 cut(s) 520, 524, 737, 1441
HpyCH4III ACNGT 4 cut(s) 856, 1194, 1252, 1586
HpyCH4IV ACGT 1 cut(s) 1363
HpyCH4V TGCA 6 cut(s) 563, 911, 1226, 1319, 1391, 1629
HpyF10VI GCNNNNNNNGC 2 cut(s) 615, 1148
HpyF3I CTNAG 9 cut(s) 177, 371, 782, 802, 872, 881, 1039, 1230, 1555
HpySE526I ACGT 1 cut(s) 1363
Hsp92II CATG 8 cut(s) 174, 280, 415, 428, 656, 1049, 1171, 1450
HspAI GCGC 1 cut(s) 809
Kzo9I GATC 3 cut(s) 868, 1460, 1633
LmnI GCTCC 2 cut(s) 455, 1590
LweI GCATC 6 cut(s) 687, 796, 920, 1121, 1235, 1537
MaeI CTAG 3 cut(s) 153, 341, 777
MaeII ACGT 1 cut(s) 1363
MaeIII GTNAC 7 cut(s) 325, 884, 1034, 1359, 1449, 1544, 1559
MalI GATC 3 cut(s) 870, 1462, 1635
MboI GATC 3 cut(s) 868, 1460, 1633
MboII GAAGA 8 cut(s) 95, 240, 273, 273, 309, 356, 362, 1426
MflI RGATCY 1 cut(s) 868
MlsI TGGCCA 2 cut(s) 651, 1079
MluCI AATT 5 cut(s) 226, 244, 1091, 1122, 1576
MluNI TGGCCA 2 cut(s) 651, 1079
MlyI GAGTC 2 cut(s) 1014, 1333
MmeI TCCRAC 2 cut(s) 99, 478
Mox20I TGGCCA 2 cut(s) 651, 1079
MroXI GAANNNNTTC 1 cut(s) 100
MscI TGGCCA 2 cut(s) 651, 1079
MseI TTAA 6 cut(s) 471, 1203, 1257, 1337, 1533, 1575
MslI CAYNNNNRTG 4 cut(s) 416, 624, 804, 1073
Msp20I TGGCCA 2 cut(s) 651, 1079
MspA1I CMGCKG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 1532
MspI CCGG 3 cut(s) 588, 672, 1007
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 2 cut(s) 615, 1148
NcoI CCATGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 517
NdeII GATC 3 cut(s) 868, 1460, 1633
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 8 cut(s) 174, 280, 415, 428, 656, 1049, 1171, 1450
NlaIV GGNNCC 1 cut(s) 667
NmuCI GTSAC 3 cut(s) 1359, 1449, 1559
NspI RCATGY 1 cut(s) 1171
PagI TCATGA 1 cut(s) 424
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 401
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 6 cut(s) 4, 311, 435, 1178, 1187, 1426
PinAI ACCGGT 2 cut(s) 587, 1006
PkrI GCNGC 2 cut(s) 658, 677
PleI GAGTC 2 cut(s) 1014, 1332
PpsI GAGTC 2 cut(s) 1014, 1332
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 1499
PsuI RGATCY 1 cut(s) 868
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 216, 605, 879, 1129
RsaNI GTAC 4 cut(s) 215, 604, 878, 1128
RseI CAYNNNNRTG 4 cut(s) 416, 624, 804, 1073
SaqAI TTAA 6 cut(s) 471, 1203, 1257, 1337, 1533, 1575
SatI GCNGC 2 cut(s) 657, 676
Sau3AI GATC 3 cut(s) 868, 1460, 1633
SchI GAGTC 2 cut(s) 1014, 1333
ScrFI CCNGG 1 cut(s) 683
SfaNI GCATC 6 cut(s) 687, 796, 920, 1121, 1235, 1537
SfcI CTRYAG 2 cut(s) 1014, 1248
SmiMI CAYNNNNRTG 4 cut(s) 416, 624, 804, 1073
SmlI CTYRAG 4 cut(s) 1212, 1328, 1523, 1532
SmoI CTYRAG 4 cut(s) 1212, 1328, 1523, 1532
Sse9I AATT 5 cut(s) 226, 244, 1091, 1122, 1576
SsiI CCGC 5 cut(s) 601, 657, 676, 1142, 1509
SspI AATATT 4 cut(s) 504, 738, 1063, 1291
SspMI CTAG 3 cut(s) 153, 341, 777
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 856, 1194, 1252, 1586
TaiI ACGT 1 cut(s) 1366
TaqI TCGA 7 cut(s) 36, 194, 257, 284, 395, 612, 865
TasI AATT 5 cut(s) 226, 244, 1091, 1122, 1576
TatI WGTACW 1 cut(s) 1127
TauI GCSGC 2 cut(s) 659, 678
TfiI GAWTC 6 cut(s) 4, 311, 435, 1178, 1187, 1426
Tru1I TTAA 6 cut(s) 471, 1203, 1257, 1337, 1533, 1575
Tru9I TTAA 6 cut(s) 471, 1203, 1257, 1337, 1533, 1575
TscAI CASTG 3 cut(s) 294, 921, 1458
TseFI GTSAC 3 cut(s) 1359, 1449, 1559
Tsp45I GTSAC 3 cut(s) 1359, 1449, 1559
TspDTI ATGAA 6 cut(s) 17, 96, 265, 363, 747, 1294
TspGWI ACGGA 2 cut(s) 381, 679
TspRI CASTG 3 cut(s) 294, 921, 1458
Vha464I CTTAAG 1 cut(s) 1532
XapI RAATTY 2 cut(s) 226, 1122
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 3 cut(s) 153, 341, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.