Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Forward (+)

53192495 .. 53196439

Gene Structure 3945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG304300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAAGAACTCGGTGTCGGATCGCAGTTTTTACATTGACAGTGAAGAGGAAGATGATGAGGAGAAGGACAACAAAAGCATAGAAGACGCGAATGATTCTGATTCTTCGGGTTCGGAAGCCGAGCACCGCCGGCAGCAGCAGATTCAGCCCAGTTCTTACAATACCCAATGGCCTCAGAGTTACAGGCAATCCATTGACCTGTATAGTAGTGTGCCATCCCCTGGAATTGGGTTTCTAGGCACTCCTTCACTGTCAAGATTAGGAAGCACGTTTCTTTCCTCATCACTAACGAGAAGGCACACTCCCGAAACATTACCTTTTTTGGCAAAACCTCCGGCACCAACCCTTGCTGAGCAACAACAGCAAAGACACAGTTCTCATTCTCTACTTCCACCAATTCCTTCCAGGAGGTCTTCAGTAAAAAAAGATGATAAATCCAGGATTTCTCATGAACATCATCCAATGCCTCGCCAAAGCTCATTCGCGCAAGCTGTGGTTAATGGAATCAATGTTCTTTGTGGAGTGGGAATTCTATCGACACCATATGCACTCAAAGAAGGAGGATGGATCGGGCTTTCCATTTTGTTTATTTTTGCAGTGCTGTCGTTCTACACTGGATTGCTTCTGCGTTACTGCTTGGATAGTCAACCTGGGCTTGAGACTTACCCAGACATTGGCCAAGCTGCATTTGGTAACCCTGGCCGAATTGCTATCTCGATAGTACTGTACGTTGAATTATATGCTTGTTGCATAGAATATATAATCTTGGAGGGTGACAACTTGTCTTCGCTATTCCCAAATGCACACCTGAACTTGGGTGGATTTGAGTTAAGTGCACACGTTTTGTTTGCAATTTTGACCGCCCTTGCTGTTCTACCTACTGTTTGGCTTCGAGACCTCAGTGTTCTTAGCTATATCTCAGCTGGTGGAGTTATTGCGTCGATCTTGGTAGTGCTTTGCTTGTTTTGGGTTGGTCTAGTAGATGGTGTTGGTTTTGAGAGCAAAGGGACTCCACTGAACCTTGCAACTCTTCCTGTTGCTATGGGTCTCTATGGTTACTGCTACTCAGGACACGCTGTATTCCCAAACATTTATACTTCATTGGAAAAACCAAACCAATACCCTGCAATTCTCTTAACATGCTTTTGCATATGTACTTTCATGTATGCTGGAGTTGCTGTCATGGGTTACACGATGTTTGGAGAAGCAACATTGTCACAGTTCACTCTCAACATGCCTCACAATTTGGTTGCCTCAAAGATTGCTGTGTGGACTACGGTAGTCAACCCATTTACCAAATATCCTTTGTTGCAAGTTATGCAGATATTGTATGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

446

Amino Acids

48.98

Weight (kDa)

5.65

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	158 - 436	1.9e-52	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	170 - 370	8.6e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	2 cut(s)	221, 674
AccII	CGCG	2 cut(s)	89, 485
AciI	CCGC	2 cut(s)	127, 861
AclWI	GGATC	2 cut(s)	27, 575
AcoI	YGGCCR	2 cut(s)	676, 700
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	3 cut(s)	723, 728, 1156
AfiI	CCNNNNNNNGG	4 cut(s)	221, 227, 674, 814
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	1 cut(s)	734
AhdI	GACNNNNNGTC	1 cut(s)	781
AjnI	CCWGG	5 cut(s)	220, 404, 437, 649, 697
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	5 cut(s)	477, 491, 683, 912, 923
AluI	AGCT	5 cut(s)	477, 491, 683, 912, 923
Alw21I	GWGCWC	2 cut(s)	126, 838
Alw26I	GTCTC	3 cut(s)	653, 888, 1052
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	2 cut(s)	27, 575
AoxI	GGCC	3 cut(s)	170, 676, 700
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	3 cut(s)	133, 136, 683
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	3 cut(s)	90, 405, 777
Bbv12I	GWGCWC	2 cut(s)	126, 838
BbvI	GCAGC	3 cut(s)	145, 148, 670
BccI	CCATC	3 cut(s)	223, 558, 977
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	5 cut(s)	222, 406, 439, 651, 699
BcoDI	GTCTC	3 cut(s)	653, 888, 1052
BfaI	CTAG	2 cut(s)	236, 977
BisI	GCNGC	3 cut(s)	134, 137, 684
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	135, 138, 685
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	5 cut(s)	222, 406, 439, 651, 699
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	5 cut(s)	222, 406, 439, 651, 699
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	3 cut(s)	90, 405, 777
BpmI	CTGGAG	1 cut(s)	1191
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	677
BsaI	GGTCTC	2 cut(s)	888, 1052
BsaJI	CCNNGG	3 cut(s)	220, 650, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	1164, 1194
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 227, 674, 814
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	150, 619
BseBI	CCWGG	5 cut(s)	222, 406, 439, 651, 699
BseDI	CCNNGG	3 cut(s)	220, 650, 697
BseGI	GGATG	3 cut(s)	215, 457, 569
BseLI	CCNNNNNNNGG	4 cut(s)	221, 227, 674, 814
BseMII	CTCAG	5 cut(s)	188, 342, 913, 933, 1080
BseNI	ACTGG	2 cut(s)	150, 619
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	145, 148, 670
Bsh1236I	CGCG	2 cut(s)	89, 485
BshFI	GGCC	3 cut(s)	172, 678, 702
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	126, 838
BsiSI	CCGG	2 cut(s)	130, 335
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	4 cut(s)	221, 227, 674, 814
BsmAI	GTCTC	3 cut(s)	653, 888, 1052
BsmFI	GGGAC	1 cut(s)	1021
BsnI	GGCC	3 cut(s)	172, 678, 702
Bso31I	GGTCTC	2 cut(s)	888, 1052
Bsp1286I	GDGCHC	2 cut(s)	126, 838
Bsp143I	GATC	3 cut(s)	19, 567, 942
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	127, 861
BspANI	GGCC	3 cut(s)	172, 678, 702
BspCNI	CTCAG	5 cut(s)	187, 343, 912, 932, 1079
BspFNI	CGCG	2 cut(s)	89, 485
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	27, 575
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	2 cut(s)	888, 1052
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	150, 619
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	220, 650, 697
BssMI	GATC	3 cut(s)	19, 567, 942
Bst2UI	CCWGG	5 cut(s)	222, 406, 439, 651, 699
Bst4CI	ACNGT	7 cut(s)	41, 252, 374, 726, 883, 1221, 1279
Bst6I	CTCTTC	2 cut(s)	39, 1035
BstAPI	GCANNNNNTGC	1 cut(s)	1318
BstC8I	GCNNGC	2 cut(s)	131, 489
BstDEI	CTNAG	6 cut(s)	174, 351, 899, 908, 919, 1066
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	215, 457, 569
BstFNI	CGCG	2 cut(s)	89, 485
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	22, 570, 945
BstMAI	GTCTC	3 cut(s)	653, 888, 1052
BstMBI	GATC	3 cut(s)	19, 567, 942
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 145, 361, 1175, 1318
BstNI	CCWGG	5 cut(s)	222, 406, 439, 651, 699
BstNSI	RCATGY	2 cut(s)	1143, 1237
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	5 cut(s)	220, 404, 437, 649, 697
BstSLI	GKGCMC	1 cut(s)	838
BstUI	CGCG	2 cut(s)	89, 485
BstV1I	GCAGC	3 cut(s)	145, 148, 670
BstV2I	GAAGAC	3 cut(s)	90, 405, 777
BsuRI	GGCC	3 cut(s)	172, 678, 702
BtsCI	GGATG	3 cut(s)	215, 457, 569
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	6 cut(s)	46, 248, 603, 612, 907, 1013
Cac8I	GCNNGC	2 cut(s)	131, 489
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	129
CseI	GACGC	2 cut(s)	95, 927
Csp6I	GTAC	3 cut(s)	722, 727, 1155
CviAII	CATG	5 cut(s)	449, 1140, 1162, 1183, 1234
CviQI	GTAC	3 cut(s)	722, 727, 1155
DdeI	CTNAG	6 cut(s)	174, 351, 899, 908, 919, 1066
DpnI	GATC	3 cut(s)	21, 569, 944
DpnII	GATC	3 cut(s)	19, 567, 942
DriI	GACNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	676, 700
Eam1104I	CTCTTC	2 cut(s)	39, 1035
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	2 cut(s)	39, 1035
Eco31I	GGTCTC	2 cut(s)	888, 1052
Eco57I	CTGAAG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	5 cut(s)	220, 404, 437, 649, 697
FaeI	CATG	5 cut(s)	452, 1143, 1165, 1186, 1237
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	5 cut(s)	448, 1139, 1161, 1182, 1233
FauNDI	CATATG	2 cut(s)	544, 1151
Fnu4HI	GCNGC	3 cut(s)	134, 137, 684
FokI	GGATG	3 cut(s)	202, 444, 576
Fsp4HI	GCNGC	3 cut(s)	134, 137, 684
FspBI	CTAG	2 cut(s)	236, 977
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	134, 137, 684
GsuI	CTGGAG	1 cut(s)	1191
HaeIII	GGCC	3 cut(s)	172, 678, 702
HapII	CCGG	2 cut(s)	130, 335
HgaI	GACGC	2 cut(s)	95, 927
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	452, 1143, 1165, 1186, 1237
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	3 cut(s)	647, 1285, 1336
HindII	GTYRAC	3 cut(s)	647, 1285, 1336
HinfI	GANTC	5 cut(s)	95, 101, 142, 504, 1009
HpaI	GTTAAC	1 cut(s)	1336
HpaII	CCGG	2 cut(s)	130, 335
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	6 cut(s)	647, 836, 1224, 1272, 1285, 1336
Hpy188I	TCNGA	4 cut(s)	19, 100, 115, 177
Hpy188III	TCNNGA	6 cut(s)	255, 305, 449, 715, 893, 1068
Hpy8I	GTNNAC	6 cut(s)	647, 836, 1224, 1272, 1285, 1336
Hpy99I	CGWCG	1 cut(s)	943
HpyAV	CCTTC	5 cut(s)	58, 255, 288, 411, 551
HpyCH4III	ACNGT	7 cut(s)	41, 252, 374, 726, 883, 1221, 1279
HpyCH4IV	ACGT	3 cut(s)	269, 729, 840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 145, 361, 1175, 1318
HpyF3I	CTNAG	6 cut(s)	174, 351, 899, 908, 919, 1066
HpySE526I	ACGT	3 cut(s)	269, 729, 840
Hsp92II	CATG	5 cut(s)	452, 1143, 1165, 1186, 1237
HspAI	GCGC	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	1336
Kzo9I	GATC	3 cut(s)	19, 567, 942
Lsp1109I	GCAGC	3 cut(s)	145, 148, 670
MaeI	CTAG	2 cut(s)	236, 977
MaeII	ACGT	3 cut(s)	269, 729, 840
MaeIII	GTNAC	7 cut(s)	179, 629, 692, 773, 1055, 1187, 1215
MalI	GATC	3 cut(s)	21, 569, 944
MboI	GATC	3 cut(s)	19, 567, 942
MboII	GAAGA	8 cut(s)	16, 56, 62, 95, 96, 405, 777, 1022
MhlI	GDGCHC	2 cut(s)	126, 838
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	8 cut(s)	225, 396, 528, 705, 734, 852, 1128, 1243
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	1003
Mox20I	TGGCCA	1 cut(s)	678
MroNI	GCCGGC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	4 cut(s)	498, 830, 1136, 1335
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	2 cut(s)	130, 335
MspR9I	CCNGG	5 cut(s)	222, 406, 439, 651, 699
MvaI	CCWGG	5 cut(s)	222, 406, 439, 651, 699
MvnI	CGCG	2 cut(s)	89, 485
MwoI	GCNNNNNNNGC	5 cut(s)	130, 145, 361, 1175, 1318
NaeI	GCCGGC	1 cut(s)	131
NdeI	CATATG	2 cut(s)	544, 1151
NdeII	GATC	3 cut(s)	19, 567, 942
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	452, 1143, 1165, 1186, 1237
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	773, 1215
NspI	RCATGY	2 cut(s)	1143, 1237
PagI	TCATGA	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	95, 101, 142, 504
PflMI	CCANNNNNTGG	2 cut(s)	221, 674
PfoI	TCCNGGA	2 cut(s)	404, 437
PkrI	GCNGC	3 cut(s)	135, 138, 685
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
Psp6I	CCWGG	5 cut(s)	220, 404, 437, 649, 697
PspEI	GGTNACC	1 cut(s)	692
PspGI	CCWGG	5 cut(s)	220, 404, 437, 649, 697
PspN4I	GGNNCC	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	3 cut(s)	723, 728, 1156
RsaNI	GTAC	3 cut(s)	722, 727, 1155
SaqAI	TTAA	4 cut(s)	498, 830, 1136, 1335
SatI	GCNGC	3 cut(s)	134, 137, 684
Sau3AI	GATC	3 cut(s)	19, 567, 942
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	5 cut(s)	222, 406, 439, 651, 699
SduI	GDGCHC	2 cut(s)	126, 838
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	8 cut(s)	225, 396, 528, 705, 734, 852, 1128, 1243
SsiI	CCGC	2 cut(s)	127, 861
SspMI	CTAG	2 cut(s)	236, 977
StyD4I	CCNGG	5 cut(s)	220, 404, 437, 649, 697
TaaI	ACNGT	7 cut(s)	41, 252, 374, 726, 883, 1221, 1279
TaiI	ACGT	3 cut(s)	272, 732, 843
TaqI	TCGA	4 cut(s)	536, 716, 892, 941
TasI	AATT	8 cut(s)	225, 396, 528, 705, 734, 852, 1128, 1243
TatI	WGTACW	2 cut(s)	721, 1154
TfiI	GAWTC	4 cut(s)	95, 101, 142, 504
Tru1I	TTAA	4 cut(s)	498, 830, 1136, 1335
Tru9I	TTAA	4 cut(s)	498, 830, 1136, 1335
TscAI	CASTG	6 cut(s)	46, 255, 603, 619, 907, 1020
TseFI	GTSAC	2 cut(s)	773, 1215
TseI	GCWGC	3 cut(s)	133, 136, 683
Tsp45I	GTSAC	2 cut(s)	773, 1215
TspDTI	ATGAA	4 cut(s)	17, 465, 1089, 1150
TspRI	CASTG	6 cut(s)	46, 255, 603, 619, 907, 1020
Van91I	CCANNNNNTGG	2 cut(s)	221, 674
VneI	GTGCAC	1 cut(s)	834
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	2 cut(s)	1143, 1237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XspI	CTAG	2 cut(s)	236, 977
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.