Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Forward (+)

21790048 .. 21793817

Gene Structure 3770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1104700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGTGAAATTACTAAAATAGACCCATTTTTTTGGAGTACTTGTAAGTACCCAATGCCTGACACATATTTTAAAGGTGATAACTTGTCTTCACTATTTCCAAATGCACAACTGAGTTTGGGCGGATTCGTGTTAGATGCTCACCTTTTATTTGCAATTGCGACCACCCTTGCTGTTCTTCCTACTGTATGGCTTCGAGACCTCAGTGTTCTTAGCTATATCTCAGCGGGTGGAGTTGTTGCATCGATCTTGGTCTGCCTTTGCCTCTTTTGGGTTGGTCTAGTAGATGGAGTTGGCTTTAAGAGCAAAGGAACACCCCTGAACCTTGCAACGCTTCCTGTTGCTATGGGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCAAACATTTATACTTCATTGGAAAAGCGAAACCAATACCCTGCAATCCTCTTAACATGTTTTTGTATTTGCACTTTCTTGTACGCTGGAGTTGCTGTTATGGGTTACACGATGTTTGGAGAATCAACACAGTCGCAGTTCACTCTCAACATGCCTCACAATTTAGTCGCGTCTAAGATTGCTCTGTGGACTACGAATTTATTTTGTGTCTTCGGAAAAACATTAACTGGAACCACATGTGAATATATTGTATGCCTTTGTTGCTCAACATCTACACACACGCACACAAACAAAATTAAACGACGAGAAAAAACTTACATATGTCTCTCCTTAACTAGACCCACATATGCATTAACTATGTCTCCCGTTGCAATGAGTCTGGAGGAGCTGGTACCAGCAAACAAGTCTTACATATACTCAATCTTAATTAGAACAGCACTCGTTGTCTCTACCCTGGTTGTCGGTCTCTGCATCCCCTTCTTTGGTCTCGTGATGTCACTGATTGGATCTTTATTCACAATGCTTGTAACTTTGATACTTCCTTGTGCTTGTTATCTGAGCATCTTGAGGGGACGCATAACTCGATTTCAGGGAACACTTTGTATTATAATTATAGCAGTAGGCGTCGTGTCGTCTGCCTTCGGGACGTTTTCGGCCATTTCGAAAATTGTTGAGAACTTGAGAAGCCCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

361

Amino Acids

39.26

Weight (kDa)

8.78

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	23 - 349	3.2e-36	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	995
Acc65I	GGTACC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	778
AccII	CGCG	1 cut(s)	557
AciI	CCGC	2 cut(s)	123, 227
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	1011
AfaI	GTAC	4 cut(s)	40, 50, 470, 780
AfiI	CCNNNNNNNGG	2 cut(s)	271, 869
AflIII	ACRYGT	2 cut(s)	443, 623
AjnI	CCWGG	1 cut(s)	840
AluBI	AGCT	2 cut(s)	216, 775
AluI	AGCT	2 cut(s)	216, 775
Alw26I	GTCTC	6 cut(s)	192, 716, 753, 838, 857, 878
AlwI	GGATC	1 cut(s)	901
AoxI	GGCC	1 cut(s)	1041
ApoI	RAATTY	1 cut(s)	583
Asp718I	GGTACC	1 cut(s)	778
AsuHPI	GGTGA	3 cut(s)	17, 89, 134
AsuII	TTCGAA	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	875
BbsI	GAAGAC	2 cut(s)	81, 589
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	842
BcoDI	GTCTC	6 cut(s)	192, 716, 753, 838, 857, 878
BfaI	CTAG	2 cut(s)	281, 723
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	842
BmiI	GGNNCC	2 cut(s)	619, 780
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	4 cut(s)	127, 251, 867, 957
BpiI	GAAGAC	2 cut(s)	81, 589
BpmI	CTGGAG	2 cut(s)	495, 788
Bpu14I	TTCGAA	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	973
Bsa29I	ATCGAT	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	1011
BsaI	GGTCTC	3 cut(s)	192, 857, 878
BsaJI	CCNNGG	1 cut(s)	840
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 468, 498, 733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 869
Bse1I	ACTGG	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	842
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	840
BseGI	GGATG	1 cut(s)	858
BseLI	CCNNNNNNNGG	2 cut(s)	271, 869
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	5 cut(s)	104, 217, 237, 384, 935
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	1043
BshNI	GGYRCC	1 cut(s)	778
BshVI	ATCGAT	1 cut(s)	245
BslFI	GGGAC	3 cut(s)	363, 972, 1045
BslI	CCNNNNNNNGG	2 cut(s)	271, 869
BsmAI	GTCTC	6 cut(s)	192, 716, 753, 838, 857, 878
BsmFI	GGGAC	3 cut(s)	363, 972, 1045
BsnI	GGCC	1 cut(s)	1043
Bso31I	GGTCTC	3 cut(s)	192, 857, 878
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp143I	GATC	2 cut(s)	246, 893
BspACI	CCGC	2 cut(s)	123, 227
BspANI	GGCC	1 cut(s)	1043
BspCNI	CTCAG	5 cut(s)	105, 216, 236, 383, 936
BspDI	ATCGAT	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	2 cut(s)	619, 780
BspPI	GGATC	1 cut(s)	901
BspT104I	TTCGAA	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	778
BspTNI	GGTCTC	3 cut(s)	192, 857, 878
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	1 cut(s)	840
BssMI	GATC	2 cut(s)	246, 893
BssNI	GRCGYC	1 cut(s)	1011
BssSI	CACGAG	1 cut(s)	875
Bst2BI	CACGAG	1 cut(s)	875
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	2 cut(s)	187, 519
BstACI	GRCGYC	1 cut(s)	1011
BstBI	TTCGAA	1 cut(s)	1049
BstDEI	CTNAG	7 cut(s)	113, 203, 212, 223, 370, 561, 944
BstF5I	GGATG	1 cut(s)	858
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	249, 896
BstMAI	GTCTC	6 cut(s)	192, 716, 753, 838, 857, 878
BstMBI	GATC	2 cut(s)	246, 893
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 479, 648
BstNI	CCWGG	1 cut(s)	842
BstNSI	RCATGY	4 cut(s)	380, 447, 541, 627
BstSCI	CCNGG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	557
BstV2I	GAAGAC	2 cut(s)	81, 589
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	893
Bsu15I	ATCGAT	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	1043
BsuTUI	ATCGAT	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	211, 884
ClaI	ATCGAT	1 cut(s)	245
CseI	GACGC	3 cut(s)	546, 969, 1000
Csp6I	GTAC	4 cut(s)	39, 49, 469, 779
CviAII	CATG	4 cut(s)	377, 444, 538, 624
CviJI	RGCY	6 cut(s)	193, 216, 297, 775, 1043, 1074
CviKI_1	RGCY	6 cut(s)	193, 216, 297, 775, 1043, 1074
CviQI	GTAC	4 cut(s)	39, 49, 469, 779
DdeI	CTNAG	7 cut(s)	113, 203, 212, 223, 370, 561, 944
DpnI	GATC	2 cut(s)	248, 895
DpnII	GATC	2 cut(s)	246, 893
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	1041
EciI	GGCGGA	1 cut(s)	138
Eco31I	GGTCTC	3 cut(s)	192, 857, 878
EcoRII	CCWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	739
FaeI	CATG	4 cut(s)	380, 447, 541, 627
FaqI	GGGAC	3 cut(s)	363, 972, 1045
FatI	CATG	4 cut(s)	376, 443, 537, 623
FauI	CCCGC	1 cut(s)	220
FauNDI	CATATG	2 cut(s)	707, 733
FokI	GGATG	1 cut(s)	845
FspBI	CTAG	2 cut(s)	281, 723
GsuI	CTGGAG	2 cut(s)	495, 788
HaeIII	GGCC	1 cut(s)	1043
HgaI	GACGC	3 cut(s)	546, 969, 1000
Hin1I	GRCGYC	1 cut(s)	1011
Hin1II	CATG	4 cut(s)	380, 447, 541, 627
HinfI	GANTC	4 cut(s)	126, 351, 509, 763
HphI	GGTGA	3 cut(s)	17, 89, 134
Hpy166II	GTNNAC	2 cut(s)	528, 576
Hpy188I	TCNGA	2 cut(s)	602, 945
Hpy188III	TCNNGA	6 cut(s)	197, 372, 767, 877, 952, 1030
Hpy8I	GTNNAC	2 cut(s)	528, 576
Hpy99I	CGWCG	2 cut(s)	693, 1016
HpyAV	CCTTC	2 cut(s)	874, 1036
HpyCH4III	ACNGT	2 cut(s)	187, 519
HpyCH4IV	ACGT	1 cut(s)	1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 479, 648
HpyF3I	CTNAG	7 cut(s)	113, 203, 212, 223, 370, 561, 944
HpySE526I	ACGT	1 cut(s)	1034
Hsp92I	GRCGYC	1 cut(s)	1011
Hsp92II	CATG	4 cut(s)	380, 447, 541, 627
KpnI	GGTACC	1 cut(s)	782
Kzo9I	GATC	2 cut(s)	246, 893
LmnI	GCTCC	1 cut(s)	772
LweI	GCATC	4 cut(s)	127, 251, 867, 957
MaeI	CTAG	2 cut(s)	281, 723
MaeII	ACGT	1 cut(s)	1034
MaeIII	GTNAC	4 cut(s)	359, 491, 882, 913
MalI	GATC	2 cut(s)	248, 895
MboI	GATC	2 cut(s)	246, 893
MboII	GAAGA	3 cut(s)	81, 170, 589
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	893
MluCI	AATT	8 cut(s)	9, 156, 547, 583, 681, 813, 996, 1053
MlyI	GAGTC	2 cut(s)	345, 772
MnlI	CCTC	6 cut(s)	212, 275, 446, 552, 763, 948
Mph1103I	ATGCAT	1 cut(s)	739
MseI	TTAA	8 cut(s)	72, 300, 440, 611, 684, 719, 740, 812
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	842
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	842
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	303, 479, 648
NdeI	CATATG	2 cut(s)	707, 733
NdeII	GATC	2 cut(s)	246, 893
NlaIII	CATG	4 cut(s)	380, 447, 541, 627
NlaIV	GGNNCC	2 cut(s)	619, 780
NmuCI	GTSAC	1 cut(s)	882
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	4 cut(s)	380, 447, 541, 627
NspV	TTCGAA	1 cut(s)	1049
PciI	ACATGT	2 cut(s)	443, 623
PcsI	WCGNNNNNNNCGW	2 cut(s)	967, 1046
PfeI	GAWTC	2 cut(s)	126, 509
PleI	GAGTC	2 cut(s)	345, 771
PpsI	GAGTC	2 cut(s)	345, 771
PscI	ACATGT	2 cut(s)	443, 623
PsiI	TTATAA	1 cut(s)	995
Psp6I	CCWGG	1 cut(s)	840
PspGI	CCWGG	1 cut(s)	840
PspN4I	GGNNCC	2 cut(s)	619, 780
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	4 cut(s)	40, 50, 470, 780
RsaNI	GTAC	4 cut(s)	39, 49, 469, 779
SaqAI	TTAA	8 cut(s)	72, 300, 440, 611, 684, 719, 740, 812
Sau3AI	GATC	2 cut(s)	246, 893
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	2 cut(s)	345, 772
ScrFI	CCNGG	1 cut(s)	842
SetI	ASST	7 cut(s)	79, 147, 204, 218, 327, 777, 1037
SfaNI	GCATC	4 cut(s)	127, 251, 867, 957
SfuI	TTCGAA	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	952, 1066
SmoI	CTYRAG	2 cut(s)	952, 1066
Sse9I	AATT	8 cut(s)	9, 156, 547, 583, 681, 813, 996, 1053
SsiI	CCGC	2 cut(s)	123, 227
SspMI	CTAG	2 cut(s)	281, 723
StyD4I	CCNGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	187, 519
TaiI	ACGT	1 cut(s)	1037
TaqI	TCGA	4 cut(s)	196, 245, 970, 1049
TaqII	GACCGA	1 cut(s)	839
TasI	AATT	8 cut(s)	9, 156, 547, 583, 681, 813, 996, 1053
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	126, 509
Tru1I	TTAA	8 cut(s)	72, 300, 440, 611, 684, 719, 740, 812
Tru9I	TTAA	8 cut(s)	72, 300, 440, 611, 684, 719, 740, 812
TscAI	CASTG	2 cut(s)	211, 891
TseFI	GTSAC	1 cut(s)	882
Tsp45I	GTSAC	1 cut(s)	882
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	211, 891
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	4 cut(s)	380, 447, 541, 627
XspI	CTAG	2 cut(s)	281, 723
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.