Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012836.1

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Reverse (-)

6055 .. 9126

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgaagaactcggtgtcggatcgcagtttttacattgacagtgaagaagaagatgatgaggagaaggacagcaaaagcatagaagacgcgaatgattctgattcttcgggttctgaagccgagcaccgccggcagcagcagattcagcccagttcttacaatacccaatggcctcagagaatcaatgttctttgtggagtgggaattctatcaacaccatatgcactcaaggaaggaggatggaccgggctttccattttgtttatttttgcagtgctgtcgttctacactggattacttctgcgttactgcttggatagtcaacctgggcttgagacttacccagacattggccaagctgcatttggtaaccctggccgaattgctatctcgatagtactgtacgttgaattatatgcttgttgcatagaatatataatcttggagggtgacaacttgtcttcgctattcccaaatgcacacctgaacttgggtggatttgagttaaatgcacacgttttgtttgcaattttgaccgcccttgctgttctacctactgtttggcttcgagacctcagtgttcttagctatatctcagctggtggagttattgcgtcgatcttggtagtgctttgcttgttttgggttggtctagtagatggtgttggctttgagagcaaagggactccactgaacctcgcaactcttcctgttgctatgggtctctatggttactgctactcaggacacgctgtattcccaaacatttatacttcattggaaaaaccaaaccaataccctgcaattctcttaacatgcttttgcatatgtactttcatgtatgctggagttgctgtcatgggttacacaatgtttggagaagcaacattgtcacagttcactctcaacatgcctcacaatttggttgcctcaaagatcgcagtgtggactacggtagtcaacccatttaccaaatatcctttgttgcaatttacgcagatattggctggtgctctctaccctggtggtcggtctttgtgtacctttctttggtctcatgatgtcattgatcggatctttattcacaatgcttgtagccttgatacttccttgtgcttgttatctgagtatcctcaagggacgagtaactcgttttcagatgatactttgtattataattattacagtaggtgtcgtagcatctggtttcggaacatattcagctgtaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

410

Amino Acids

45.43

Weight (kDa)

4.73

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1176
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	127, 537
AclWI	GGATC	2 cut(s)	27, 1082
AcoI	YGGCCR	2 cut(s)	352, 376
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	4 cut(s)	399, 404, 832, 1042
AfiI	CCNNNNNNNGG	3 cut(s)	350, 490, 1050
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	1 cut(s)	410
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	3 cut(s)	325, 373, 1021
AluBI	AGCT	4 cut(s)	359, 588, 599, 1224
AluI	AGCT	4 cut(s)	359, 588, 599, 1224
Alw21I	GWGCWC	2 cut(s)	126, 1015
Alw26I	GTCTC	4 cut(s)	329, 564, 728, 1059
AlwI	GGATC	2 cut(s)	27, 1082
AoxI	GGCC	3 cut(s)	170, 352, 376
ApeKI	GCWGC	3 cut(s)	133, 136, 359
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	1217
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	354
BbsI	GAAGAC	2 cut(s)	90, 453
Bbv12I	GWGCWC	2 cut(s)	126, 1015
BbvI	GCAGC	3 cut(s)	145, 148, 346
BccI	CCATC	2 cut(s)	234, 653
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	3 cut(s)	327, 375, 1023
BciVI	GTATCC	1 cut(s)	1140
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	4 cut(s)	329, 564, 728, 1059
BfaI	CTAG	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	1140
BisI	GCNGC	3 cut(s)	134, 137, 360
BlsI	GCNGC	3 cut(s)	135, 138, 361
BmcAI	AGTACT	1 cut(s)	399
Bme1390I	CCNGG	4 cut(s)	247, 327, 375, 1023
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	4 cut(s)	247, 327, 375, 1023
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	1209
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	90, 453
BpmI	CTGGAG	1 cut(s)	867
BpuEI	CTTGAG	3 cut(s)	212, 353, 1119
BpuMI	CCSGG	1 cut(s)	247
BsaI	GGTCTC	3 cut(s)	564, 728, 1059
BsaJI	CCNNGG	3 cut(s)	326, 373, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 490, 1050
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	150, 295
BseBI	CCWGG	3 cut(s)	327, 375, 1023
BseDI	CCNNGG	3 cut(s)	326, 373, 1021
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	3 cut(s)	350, 490, 1050
BseMII	CTCAG	5 cut(s)	188, 589, 609, 756, 1116
BseNI	ACTGG	2 cut(s)	150, 295
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	145, 148, 346
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	172, 354, 378
BsiHKAI	GWGCWC	2 cut(s)	126, 1015
BsiSI	CCGG	2 cut(s)	130, 246
BslFI	GGGAC	2 cut(s)	697, 1153
BslI	CCNNNNNNNGG	3 cut(s)	350, 490, 1050
BsmAI	GTCTC	4 cut(s)	329, 564, 728, 1059
BsmFI	GGGAC	2 cut(s)	697, 1153
BsnI	GGCC	3 cut(s)	172, 354, 378
Bso31I	GGTCTC	3 cut(s)	564, 728, 1059
Bsp1286I	GDGCHC	2 cut(s)	126, 1015
Bsp143I	GATC	5 cut(s)	19, 618, 936, 1069, 1074
BspACI	CCGC	2 cut(s)	127, 537
BspANI	GGCC	3 cut(s)	172, 354, 378
BspCNI	CTCAG	5 cut(s)	187, 588, 608, 755, 1117
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	1057
BspPI	GGATC	2 cut(s)	27, 1082
BspTNI	GGTCTC	3 cut(s)	564, 728, 1059
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	150, 295
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	326, 373, 1021
BssMI	GATC	5 cut(s)	19, 618, 936, 1069, 1074
Bst2UI	CCWGG	3 cut(s)	327, 375, 1023
Bst4CI	ACNGT	6 cut(s)	41, 402, 559, 897, 955, 1187
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	6 cut(s)	174, 575, 584, 595, 742, 1125
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	5 cut(s)	22, 621, 939, 1072, 1077
BstMAI	GTCTC	4 cut(s)	329, 564, 728, 1059
BstMBI	GATC	5 cut(s)	19, 618, 936, 1069, 1074
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 145, 675, 851, 994
BstNI	CCWGG	3 cut(s)	327, 375, 1023
BstNSI	RCATGY	2 cut(s)	819, 913
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	4 cut(s)	245, 325, 373, 1021
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	145, 148, 346
BstV2I	GAAGAC	2 cut(s)	90, 453
BstX2I	RGATCY	1 cut(s)	1074
BstYI	RGATCY	1 cut(s)	1074
BsuI	GTATCC	1 cut(s)	1140
BsuRI	GGCC	3 cut(s)	172, 354, 378
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	2 cut(s)	279, 948
BtsIMutI	CAGTG	6 cut(s)	46, 279, 288, 583, 689, 948
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	1057
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	2 cut(s)	95, 603
Csp6I	GTAC	4 cut(s)	398, 403, 831, 1041
CviAII	CATG	5 cut(s)	816, 838, 859, 910, 1058
CviQI	GTAC	4 cut(s)	398, 403, 831, 1041
DdeI	CTNAG	6 cut(s)	174, 575, 584, 595, 742, 1125
DpnI	GATC	5 cut(s)	21, 620, 938, 1071, 1076
DpnII	GATC	5 cut(s)	19, 618, 936, 1069, 1074
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	2 cut(s)	352, 376
Eam1104I	CTCTTC	1 cut(s)	711
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	711
Eco31I	GGTCTC	3 cut(s)	564, 728, 1059
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	325, 373, 1021
FaeI	CATG	5 cut(s)	819, 841, 862, 913, 1061
FaqI	GGGAC	2 cut(s)	697, 1153
FatI	CATG	5 cut(s)	815, 837, 858, 909, 1057
FauNDI	CATATG	2 cut(s)	220, 827
Fnu4HI	GCNGC	3 cut(s)	134, 137, 360
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	134, 137, 360
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	3 cut(s)	134, 137, 360
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	3 cut(s)	172, 354, 378
HapII	CCGG	2 cut(s)	130, 246
HgaI	GACGC	2 cut(s)	95, 603
Hin1II	CATG	5 cut(s)	819, 841, 862, 913, 1061
HincII	GTYRAC	2 cut(s)	323, 961
HindII	GTYRAC	2 cut(s)	323, 961
HinfI	GANTC	5 cut(s)	95, 101, 142, 180, 685
HpaII	CCGG	2 cut(s)	130, 246
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	5 cut(s)	323, 900, 948, 961, 1041
Hpy188I	TCNGA	8 cut(s)	19, 100, 115, 177, 1074, 1126, 1159, 1212
Hpy188III	TCNNGA	4 cut(s)	391, 569, 744, 1058
Hpy8I	GTNNAC	5 cut(s)	323, 900, 948, 961, 1041
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	2 cut(s)	58, 227
HpyCH4III	ACNGT	6 cut(s)	41, 402, 559, 897, 955, 1187
HpyCH4IV	ACGT	2 cut(s)	405, 516
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 145, 675, 851, 994
HpyF3I	CTNAG	6 cut(s)	174, 575, 584, 595, 742, 1125
HpySE526I	ACGT	2 cut(s)	405, 516
Hsp92II	CATG	5 cut(s)	819, 841, 862, 913, 1061
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
Kzo9I	GATC	5 cut(s)	19, 618, 936, 1069, 1074
Lsp1109I	GCAGC	3 cut(s)	145, 148, 346
LweI	GCATC	1 cut(s)	1209
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	405, 516
MaeIII	GTNAC	8 cut(s)	305, 368, 449, 731, 863, 891, 1145, 1226
MalI	GATC	5 cut(s)	21, 620, 938, 1071, 1076
MboI	GATC	5 cut(s)	19, 618, 936, 1069, 1074
MboII	GAAGA	8 cut(s)	16, 56, 59, 62, 95, 96, 453, 698
MflI	RGATCY	1 cut(s)	1074
MhlI	GDGCHC	2 cut(s)	126, 1015
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	8 cut(s)	204, 381, 410, 528, 804, 919, 989, 1177
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	679
MnlI	CCTC	9 cut(s)	52, 183, 230, 439, 584, 707, 924, 940, 1143
Mox20I	TGGCCA	1 cut(s)	354
MroNI	GCCGGC	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	1217
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	506, 812
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	599, 1224
MspI	CCGG	2 cut(s)	130, 246
MspR9I	CCNGG	4 cut(s)	247, 327, 375, 1023
MvaI	CCWGG	3 cut(s)	327, 375, 1023
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	130, 145, 675, 851, 994
NaeI	GCCGGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	247
NdeI	CATATG	2 cut(s)	220, 827
NdeII	GATC	5 cut(s)	19, 618, 936, 1069, 1074
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	819, 841, 862, 913, 1061
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	449, 891
NspI	RCATGY	2 cut(s)	819, 913
PagI	TCATGA	1 cut(s)	1057
PcsI	WCGNNNNNNNCGW	1 cut(s)	1148
PdiI	GCCGGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	1217
PfeI	GAWTC	4 cut(s)	95, 101, 142, 180
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	135, 138, 361
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PsiI	TTATAA	1 cut(s)	1176
Psp6I	CCWGG	3 cut(s)	325, 373, 1021
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	3 cut(s)	325, 373, 1021
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	1074
PvuII	CAGCTG	2 cut(s)	599, 1224
RsaI	GTAC	4 cut(s)	399, 404, 832, 1042
RsaNI	GTAC	4 cut(s)	398, 403, 831, 1041
SaqAI	TTAA	2 cut(s)	506, 812
SatI	GCNGC	3 cut(s)	134, 137, 360
Sau3AI	GATC	5 cut(s)	19, 618, 936, 1069, 1074
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	4 cut(s)	247, 327, 375, 1023
SduI	GDGCHC	2 cut(s)	126, 1015
SfaNI	GCATC	1 cut(s)	1209
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	3 cut(s)	227, 332, 1134
SmoI	CTYRAG	3 cut(s)	227, 332, 1134
Sse9I	AATT	8 cut(s)	204, 381, 410, 528, 804, 919, 989, 1177
SsiI	CCGC	2 cut(s)	127, 537
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	4 cut(s)	245, 325, 373, 1021
TaaI	ACNGT	6 cut(s)	41, 402, 559, 897, 955, 1187
TaiI	ACGT	2 cut(s)	408, 519
TaqI	TCGA	3 cut(s)	392, 568, 617
TaqII	GACCGA	1 cut(s)	1020
TasI	AATT	8 cut(s)	204, 381, 410, 528, 804, 919, 989, 1177
TatI	WGTACW	2 cut(s)	397, 830
TfiI	GAWTC	4 cut(s)	95, 101, 142, 180
Tru1I	TTAA	2 cut(s)	506, 812
Tru9I	TTAA	2 cut(s)	506, 812
TscAI	CASTG	6 cut(s)	46, 279, 295, 583, 696, 948
TseFI	GTSAC	2 cut(s)	449, 891
TseI	GCWGC	3 cut(s)	133, 136, 359
Tsp45I	GTSAC	2 cut(s)	449, 891
TspDTI	ATGAA	3 cut(s)	17, 765, 826
TspRI	CASTG	6 cut(s)	46, 279, 295, 583, 696, 948
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	2 cut(s)	819, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	1217
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.