Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Forward (+)

41758242 .. 41758841

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCATGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTCATCTGCACCTGCTTTTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACATAGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

199

Amino Acids

22.0

Weight (kDa)

9.17

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	2.7e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 361
Acc36I	ACCTGC	3 cut(s)	78, 160, 361
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	4 cut(s)	82, 369, 414, 595
AclWI	GGATC	2 cut(s)	188, 430
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	220, 443
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	4 cut(s)	130, 193, 550, 575
AluI	AGCT	4 cut(s)	130, 193, 550, 575
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	188, 430
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 482
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	256, 552
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 394, 500
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 361
BisI	GCNGC	2 cut(s)	51, 595
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	2 cut(s)	52, 596
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 593
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	107, 566
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 589
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 552
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	4 cut(s)	82, 369, 414, 595
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	6, 155, 593
BspMI	ACCTGC	3 cut(s)	78, 160, 361
BspPI	GGATC	2 cut(s)	188, 430
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 425, 520
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	180, 422
BstYI	RGATCY	2 cut(s)	180, 422
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 361
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	7 cut(s)	70, 241, 293, 301, 463, 467, 490
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 424, 519
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	256, 552
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	256, 552
FaeI	CATG	7 cut(s)	73, 244, 296, 304, 466, 470, 493
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	7 cut(s)	69, 240, 292, 300, 462, 466, 489
Fnu4HI	GCNGC	2 cut(s)	51, 595
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 552
Fsp4HI	GCNGC	2 cut(s)	51, 595
GluI	GCNGC	2 cut(s)	51, 595
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 589
Hin1II	CATG	7 cut(s)	73, 244, 296, 304, 466, 470, 493
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 589
HphI	GGTGA	2 cut(s)	335, 482
Hpy166II	GTNNAC	2 cut(s)	93, 279
Hpy188I	TCNGA	4 cut(s)	111, 177, 286, 505
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 589
Hpy8I	GTNNAC	2 cut(s)	93, 279
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 350, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	73, 244, 296, 304, 466, 470, 493
Kpn2I	TCCGGA	1 cut(s)	588
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
LmnI	GCTCC	3 cut(s)	84, 127, 591
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	108, 182, 212, 310, 424, 519
MboI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
MboII	GAAGA	4 cut(s)	280, 283, 357, 505
MflI	RGATCY	2 cut(s)	180, 422
MhlI	GDGCHC	3 cut(s)	256, 300, 552
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 267, 462, 466, 503, 559
Mph1103I	ATGCAT	1 cut(s)	468
MroI	TCCGGA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	3 cut(s)	193, 371, 597
MspI	CCGG	2 cut(s)	54, 589
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
NlaIII	CATG	7 cut(s)	73, 244, 296, 304, 466, 470, 493
NlaIV	GGNNCC	3 cut(s)	6, 155, 593
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	525
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	2 cut(s)	78, 361
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 596
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 593
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 422
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	51, 595
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 552
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	122, 545
SmoI	CTYRAG	2 cut(s)	122, 545
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	82, 369, 414, 595
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	6 cut(s)	229, 257, 281, 333, 443, 506
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.