Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001966

Physical Location & Seq

Genomic Coordinates Forward (+)

18941923 .. 18944379

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTACTATTGCAGTGGGTCGCAGATGAGCAACAACAGCAGCAGCAGAGACGCAGTTCTCATTCTCTGCTTCCTCCTCTGCCAAGGAGGTCTTCAGTTAGAAAAGATGAGAAAGCATCCAGGGTTGCTCATGACCATCATCCGATGTCTCGCCACAGCTCATTTGCACAAGCCGTGATCAATGGAATTAACGTTCTTTGCGGGGTTGGGATCCTTTCGACACCATACGCGGTCAAAGAAGGAGGATGGCTTGGGCTCTTCATTTTACTTATTTTTGCAGTGCTTTCGTTCTACACAGGATTGCTCCTGCGTTATTGCTTGGATAGCCAACCTGGGCTTGAGACTTACCCAGACATTGGCCAAGCTGCATTTGGTACTGGAGGCAGAATCGCCATCTCGGTAAGCTATAATACTGTACGTGGAATTATATTAGGTACTCAAGAAAAACTGAAAATAGACAAGAGGCAGGTGGTTCTTGCCATGGTGCTCACTTACCAAAAGGGAAATAATTCTCCTCCTACACACCCTTGTTTAATCCAGACTATTGTTTTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

186

Amino Acids

20.48

Weight (kDa)

9.58

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39130 AT2G39130 AT2G39130 AT3G54830 AT3G54830
fragaria_vesca	FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870 FvH4_7g18870
malus_domestica	MD01G1104600.v1.1 MD01G1104700.v1.1 MD07G1171200.v1.1
prunus_persica	Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1 Prupe.2G209900_v2.0.a1
pyrus_communis	pycom01g13120 pycom01g13130 pycom07g16500
rosa_chinensis	RchiOBHm_Chr1g0362811
rosa_laevigata	RLG00000027620
rosa_multiflora	Rmu_sc0012836.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293750
rosa_rugosa	Rorug01G0301400 Rorug01G0301500 Rorug01G0301600 Rorug01G0301700
rosa_samantha	Rh1AG310400 Rh1BG273600 Rh1CG290800 Rh1DG304300
rosa_wichuraiana	Rw1G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	201, 230
AclI	AACGTT	1 cut(s)	192
AclWI	GGATC	2 cut(s)	205, 218
AcoI	YGGCCR	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	376, 417, 436
AfiI	CCNNNNNNNGG	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	119, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	3 cut(s)	159, 365, 405
AluI	AGCT	3 cut(s)	159, 365, 405
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	43, 153, 335
AlwI	GGATC	2 cut(s)	205, 218
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	3 cut(s)	40, 43, 365
Asp700I	GAANNNNTTC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	52, 55, 352
BccI	CCATC	3 cut(s)	144, 240, 401
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciT130I	CCWGG	2 cut(s)	121, 333
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	43, 153, 335
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	41, 44, 366
BlsI	GCNGC	3 cut(s)	42, 45, 367
Bme1390I	CCNGG	2 cut(s)	121, 333
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	121, 333
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	359, 423
BsaAI	YACGTR	1 cut(s)	419
BsaJI	CCNNGG	4 cut(s)	83, 120, 332, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	121, 333
BseDI	CCNNGG	4 cut(s)	83, 120, 332, 480
BseGI	GGATG	3 cut(s)	116, 139, 251
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	66, 504
BseXI	GCAGC	3 cut(s)	52, 55, 352
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	3 cut(s)	43, 153, 335
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	258, 489
Bsp143I	GATC	2 cut(s)	177, 210
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	2 cut(s)	201, 230
BspANI	GGCC	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	205, 218
BspQI	GCTCTTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	83, 120, 332, 480
BssMI	GATC	2 cut(s)	177, 210
BssT1I	CCWWGG	2 cut(s)	83, 480
Bst2UI	CCWGG	2 cut(s)	121, 333
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	116, 139, 251
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	2 cut(s)	180, 213
BstMAI	GTCTC	3 cut(s)	43, 153, 335
BstMBI	GATC	2 cut(s)	177, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 324
BstNI	CCWGG	2 cut(s)	121, 333
BstSCI	CCNGG	2 cut(s)	119, 331
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	52, 55, 352
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	116, 139, 251
BtsI	GCAGTG	2 cut(s)	20, 285
BtsIMutI	CAGTG	2 cut(s)	20, 285
BveI	ACCTGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	130
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	375, 416, 435
CviAII	CATG	2 cut(s)	131, 481
CviJI	RGCY	9 cut(s)	159, 173, 250, 256, 327, 337, 360, 365, 405
CviKI_1	RGCY	9 cut(s)	159, 173, 250, 256, 327, 337, 360, 365, 405
CviQI	GTAC	3 cut(s)	375, 416, 435
DpnI	GATC	2 cut(s)	179, 212
DpnII	GATC	2 cut(s)	177, 210
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	83, 480
Eco24I	GRGCYC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	119, 331
EcoT14I	CCWWGG	2 cut(s)	83, 480
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	83, 480
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	134, 484
FaiI	YATR	5 cut(s)	132, 226, 408, 428, 482
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	2 cut(s)	130, 480
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	41, 44, 366
FokI	GGATG	3 cut(s)	103, 126, 258
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	41, 44, 366
GluI	GCNGC	3 cut(s)	41, 44, 366
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	360
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	134, 484
HinfI	GANTC	1 cut(s)	387
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	131, 440, 538
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	2 cut(s)	192, 418
HpyCH4V	TGCA	4 cut(s)	13, 167, 278, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 324
HpySE526I	ACGT	2 cut(s)	192, 418
Hsp92II	CATG	2 cut(s)	134, 484
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 210
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	3 cut(s)	52, 55, 352
LweI	GCATC	1 cut(s)	125
MaeII	ACGT	2 cut(s)	192, 418
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	179, 212
MboI	GATC	2 cut(s)	177, 210
MboII	GAAGA	2 cut(s)	84, 250
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	258, 489
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	3 cut(s)	186, 423, 508
MluNI	TGGCCA	1 cut(s)	360
MnlI	CCTC	7 cut(s)	81, 84, 87, 236, 374, 456, 525
Mox20I	TGGCCA	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	3 cut(s)	189, 533, 556
Msp20I	TGGCCA	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	121, 333
MvaI	CCWGG	2 cut(s)	121, 333
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	37, 324
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	2 cut(s)	177, 210
NlaIII	CATG	2 cut(s)	134, 484
NlaIV	GGNNCC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	42, 45, 367
Ppu21I	YACGTR	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	119, 331
PspGI	CCWGG	2 cut(s)	119, 331
PspN4I	GGNNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	3 cut(s)	376, 417, 436
RsaNI	GTAC	3 cut(s)	375, 416, 435
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	189, 533, 556
SatI	GCNGC	3 cut(s)	41, 44, 366
Sau3AI	GATC	2 cut(s)	177, 210
ScrFI	CCNGG	2 cut(s)	121, 333
SduI	GDGCHC	2 cut(s)	258, 489
SetI	ASST	9 cut(s)	92, 161, 195, 334, 367, 407, 421, 436, 471
SfaNI	GCATC	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	338, 438
SmoI	CTYRAG	2 cut(s)	338, 438
Sse9I	AATT	3 cut(s)	186, 423, 508
SsiI	CCGC	2 cut(s)	201, 230
StyD4I	CCNGG	2 cut(s)	119, 331
StyI	CCWWGG	2 cut(s)	83, 480
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	2 cut(s)	195, 421
TaqI	TCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	186, 423, 508
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	3 cut(s)	189, 533, 556
Tru9I	TTAA	3 cut(s)	189, 533, 556
TscAI	CASTG	2 cut(s)	20, 285
TseI	GCWGC	3 cut(s)	40, 43, 365
TspDTI	ATGAA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	20, 285
Van91I	CCANNNNNTGG	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.