MD07G1171200.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
24734061 .. 24739833
5773 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1171200.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGAATAATTCGGTTTCGGATCGGAGTTTTTACATTGAGAGTGAGGAAGAAGATGATGAGGAAAAGGAATTCAATAAGAGCATTGAAGACGGAGGCGAATCGGATTCTTCTGCCGAATCTTTTACTGAGAATCGGCAGCCGAATAATCCCAGTTCTCACAACAATCAATGGCCTCAAAGTTACAGGCAATCCATTGATCTCTATGGTAGTGTTCCATCCCCTAGTATTGGGTTTCTGGGCACTCCTTCATTGTCAAGACTAGGAAGTTCATTTCTTTCCTCATCCCTAACAAGAAGGTACACTCCCGAAACATTACCTTTCTTGTCAAAACCATTACCAACGGTCGCAGATGAGCAACAACACCAGCAGCAGAGGCGCAGTTCTCATTCTCTGCTTCCTCCTCTGCCAAGGAGGTCTTCGGTTAGAAAAGATGAGAAAGCATCCAGGGTTACTCATGACCATCATCCGATGCCTCGCCACAGCTCATTTGCACAAGCCGTGATCAATGGAATTAACGTTCTTTGCGGGGTTGGGATCCTTTCGACACCATACGCGGTCAAAGAAGGGGGATGGCTTGGGCTCTTCGTGTTACTTATTTTTGCAGTGCTTTCATTCTACACAGGATTGCTCCTGCGTTACTGCTTGGATAGCCAACCTGGGCTTGAGACTTACCCAGATATTGGCCAAGCTGCATTTGGTACTGGAGGCAGAATCGCCATCTCGATAATACTGTACGTGGAATTATATGCTTGTTGCATAGAATATATAATTTTGGAGAGTGATAACTTGTCTTCACTATTTCCAAATGCGCAACTAAGTTTGGGCGGATTCGTGTTAGATGCTCACCTTTTGTTTGCGATTGTGACCACCCTTGCTGTTCTTCCTACTGTATGGCTTCGAGACCTCAGCGTTCTTAGCTATATCTCAGCGGGTGGAGTCATTGCATCGATCTTGGTCGTCCTTTGCCTCCTTTGGGTTGGTCTAGTAGATGGAGTTGGCTTTGAGAGCAAAGGAACACCACTGAACCTTGCAACCCTTCCTGTTGCTATGGGTCTCTACGGTTACTGCTACTCAGGACATGCTGTTTTCCCAAACATTTATACTTCATTGGAAAACCGAAGCCAATACCCTGCAATCCTCTTAACCTGTTTTTGTATTTGCACTTTAATGTACGGTGGAGTTGCTGTCATGGGTTACACGATGTTTGGAGAATTAACACAGTCGCAGTTCACTCTCAACATGCCTCACGATTTAGTTGCGACCAAGATTGCTCTATGGACTACGGTGGTCAACCCCTTTACAAAATATCCTTTACTGCAAATTATGCAGATAATGAATGTCATCTTATGCACAAACACAAACATATATCACACAAGCGCACACAATGCATGCAATCTCGAATTTTATTTTGTCTTCGGAAAAACATCGGAAAGAACAGTAACTAGAACCACATATGCATATATTTTTTCTTTTGTTGCTCAACATCTACACACATACACACATACACACACAAAACAAAATAATAAATGA

Protein Analysis

510

Amino Acids

56.44

Weight (kDa)

5.96

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 160 - 493 2.3e-50 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 680
AccII CGCG 1 cut(s) 554
AciI CCGC 4 cut(s) 525, 554, 825, 929
AclI AACGTT 1 cut(s) 516
AclWI GGATC 3 cut(s) 27, 529, 542
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 68, 1400
AfaI GTAC 4 cut(s) 299, 700, 734, 1172
AfiI CCNNNNNNNGG 3 cut(s) 227, 680, 973
AgsI TTSAA 2 cut(s) 73, 86
AjnI CCWGG 2 cut(s) 443, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 3 cut(s) 483, 689, 918
AluI AGCT 3 cut(s) 483, 689, 918
Alw26I GTCTC 3 cut(s) 659, 894, 1058
AlwI GGATC 3 cut(s) 27, 529, 542
AoxI GGCC 2 cut(s) 170, 682
ApeKI GCWGC 3 cut(s) 136, 367, 689
ApoI RAATTY 2 cut(s) 68, 1400
AspLEI GCGC 3 cut(s) 378, 811, 1379
AsuHPI GGTGA 1 cut(s) 836
BaeGI GKGCMC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 684
BamHI GGATCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 4 cut(s) 93, 408, 783, 1405
BbvCI CCTCAGC 1 cut(s) 905
BbvI GCAGC 3 cut(s) 148, 379, 676
BccI CCATC 5 cut(s) 223, 468, 564, 725, 983
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 2 cut(s) 445, 657
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 659, 894, 1058
BfaI CTAG 4 cut(s) 222, 260, 983, 1443
BisI GCNGC 3 cut(s) 137, 368, 690
BlsI GCNGC 3 cut(s) 138, 369, 691
Bme1390I CCNGG 2 cut(s) 445, 657
BmiI GGNNCC 1 cut(s) 536
BmrFI CCNGG 2 cut(s) 445, 657
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 4 cut(s) 449, 459, 829, 953
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 4 cut(s) 93, 408, 783, 1405
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 683
Bsa29I ATCGAT 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 736
BsaI GGTCTC 2 cut(s) 894, 1058
BsaJI CCNNGG 3 cut(s) 407, 444, 656
BsaXI ACNNNNNCTCC 2 cut(s) 1170, 1200
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 680, 973
Bse1I ACTGG 2 cut(s) 150, 706
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 445, 657
BseCI ATCGAT 1 cut(s) 947
BseDI CCNNGG 3 cut(s) 407, 444, 656
BseGI GGATG 5 cut(s) 215, 281, 440, 463, 575
BseLI CCNNNNNNNGG 3 cut(s) 227, 680, 973
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 4 cut(s) 117, 919, 939, 1086
BseNI ACTGG 2 cut(s) 150, 706
BseRI GAGGAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 148, 379, 676
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 172, 684
BshVI ATCGAT 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 227, 680, 973
BsmAI GTCTC 3 cut(s) 659, 894, 1058
BsnI GGCC 2 cut(s) 172, 684
Bso31I GGTCTC 2 cut(s) 894, 1058
Bsp1286I GDGCHC 2 cut(s) 242, 582
Bsp143I GATC 5 cut(s) 19, 196, 501, 534, 948
BspACI CCGC 4 cut(s) 525, 554, 825, 929
BspANI GGCC 2 cut(s) 172, 684
BspCNI CTCAG 4 cut(s) 118, 918, 938, 1085
BspDI ATCGAT 1 cut(s) 947
BspFNI CGCG 1 cut(s) 554
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 536
BspPI GGATC 3 cut(s) 27, 529, 542
BspQI GCTCTTC 1 cut(s) 587
BspTNI GGTCTC 2 cut(s) 894, 1058
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 2 cut(s) 150, 706
BssECI CCNNGG 3 cut(s) 407, 444, 656
BssMI GATC 5 cut(s) 19, 196, 501, 534, 948
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 445, 657
Bst4CI ACNGT 8 cut(s) 343, 732, 889, 1061, 1175, 1221, 1285, 1438
Bst6I CTCTTC 1 cut(s) 587
BstAPI GCANNNNNTGC 2 cut(s) 1324, 1385
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 1390
BstDEI CTNAG 6 cut(s) 126, 815, 905, 914, 925, 1072
BstF5I GGATG 5 cut(s) 215, 281, 440, 463, 575
BstFNI CGCG 1 cut(s) 554
BstHHI GCGC 3 cut(s) 378, 811, 1379
BstKTI GATC 5 cut(s) 22, 199, 504, 537, 951
BstMAI GTCTC 3 cut(s) 659, 894, 1058
BstMBI GATC 5 cut(s) 19, 196, 501, 534, 948
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 6 cut(s) 373, 648, 915, 1005, 1324, 1385
BstNI CCWGG 2 cut(s) 445, 657
BstNSI RCATGY 3 cut(s) 1082, 1243, 1392
BstSCI CCNGG 2 cut(s) 443, 655
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 3 cut(s) 148, 379, 676
BstV2I GAAGAC 4 cut(s) 93, 408, 783, 1405
BstX2I RGATCY 1 cut(s) 534
BstYI RGATCY 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 947
BsuRI GGCC 2 cut(s) 172, 684
BsuTUI ATCGAT 1 cut(s) 947
BtsCI GGATG 5 cut(s) 215, 281, 440, 463, 575
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 609, 1019
Cac8I GCNNGC 1 cut(s) 1390
CciI TCATGA 1 cut(s) 454
CfoI GCGC 3 cut(s) 378, 811, 1379
ClaI ATCGAT 1 cut(s) 947
Csp6I GTAC 4 cut(s) 298, 699, 733, 1171
CviAII CATG 5 cut(s) 455, 1079, 1189, 1240, 1389
CviQI GTAC 4 cut(s) 298, 699, 733, 1171
DdeI CTNAG 6 cut(s) 126, 815, 905, 914, 925, 1072
DpnI GATC 5 cut(s) 21, 198, 503, 536, 950
DpnII GATC 5 cut(s) 19, 196, 501, 534, 948
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
EciI GGCGGA 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 2 cut(s) 894, 1058
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 443, 655
EcoT14I CCWWGG 1 cut(s) 407
EcoT22I ATGCAT 2 cut(s) 1390, 1459
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 5 cut(s) 458, 1082, 1192, 1243, 1392
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 5 cut(s) 454, 1078, 1188, 1239, 1388
FauI CCCGC 2 cut(s) 518, 922
FauNDI CATATG 1 cut(s) 1453
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 137, 368, 690
FokI GGATG 5 cut(s) 202, 268, 427, 450, 582
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 137, 368, 690
FspBI CTAG 4 cut(s) 222, 260, 983, 1443
FspI TGCGCA 1 cut(s) 810
GlaI GCGC 3 cut(s) 377, 810, 1378
GluI GCNGC 3 cut(s) 137, 368, 690
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 2 cut(s) 172, 684
HhaI GCGC 3 cut(s) 378, 811, 1379
Hin1II CATG 5 cut(s) 458, 1082, 1192, 1243, 1392
Hin6I GCGC 3 cut(s) 376, 809, 1377
HinP1I GCGC 3 cut(s) 376, 809, 1377
HincII GTYRAC 1 cut(s) 1291
HindII GTYRAC 1 cut(s) 1291
HinfI GANTC 7 cut(s) 98, 104, 116, 130, 711, 828, 936
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 3 cut(s) 300, 1230, 1291
Hpy188I TCNGA 6 cut(s) 19, 24, 103, 468, 1418, 1429
Hpy188III TCNNGA 8 cut(s) 255, 305, 455, 721, 899, 1074, 1247, 1397
Hpy8I GTNNAC 3 cut(s) 300, 1230, 1291
HpyAV CCTTC 4 cut(s) 255, 288, 557, 1046
HpyCH4III ACNGT 8 cut(s) 343, 732, 889, 1061, 1175, 1221, 1285, 1438
HpyCH4IV ACGT 2 cut(s) 516, 735
HpyF10VI GCNNNNNNNGC 6 cut(s) 373, 648, 915, 1005, 1324, 1385
HpyF3I CTNAG 6 cut(s) 126, 815, 905, 914, 925, 1072
HpySE526I ACGT 2 cut(s) 516, 735
Hsp92II CATG 5 cut(s) 458, 1082, 1192, 1243, 1392
HspAI GCGC 3 cut(s) 376, 809, 1377
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 5 cut(s) 19, 196, 501, 534, 948
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 3 cut(s) 148, 379, 676
LweI GCATC 4 cut(s) 449, 459, 829, 953
MaeI CTAG 4 cut(s) 222, 260, 983, 1443
MaeII ACGT 2 cut(s) 516, 735
MaeIII GTNAC 8 cut(s) 179, 448, 588, 635, 862, 1061, 1193, 1438
MalI GATC 5 cut(s) 21, 198, 503, 536, 950
MboI GATC 5 cut(s) 19, 196, 501, 534, 948
MboII GAAGA 9 cut(s) 59, 62, 98, 99, 408, 574, 783, 872, 1405
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 2 cut(s) 242, 582
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 8 cut(s) 7, 68, 510, 740, 768, 1211, 1320, 1400
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 1 cut(s) 945
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 2 cut(s) 1390, 1459
MscI TGGCCA 1 cut(s) 684
MseI TTAA 4 cut(s) 513, 1142, 1166, 1214
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 929
MspR9I CCNGG 2 cut(s) 445, 657
MvaI CCWGG 2 cut(s) 445, 657
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 6 cut(s) 373, 648, 915, 1005, 1324, 1385
NdeI CATATG 1 cut(s) 1453
NdeII GATC 5 cut(s) 19, 196, 501, 534, 948
NlaIII CATG 5 cut(s) 458, 1082, 1192, 1243, 1392
NlaIV GGNNCC 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 862
NsbI TGCGCA 1 cut(s) 810
NsiI ATGCAT 2 cut(s) 1390, 1459
NspI RCATGY 3 cut(s) 1082, 1243, 1392
PaeI GCATGC 1 cut(s) 1392
PagI TCATGA 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 587
PfeI GAWTC 6 cut(s) 98, 104, 116, 130, 711, 828
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 3 cut(s) 138, 369, 691
PleI GAGTC 1 cut(s) 944
PpsI GAGTC 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 736
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 443, 655
PspGI CCWGG 2 cut(s) 443, 655
PspN4I GGNNCC 1 cut(s) 536
PsuI RGATCY 1 cut(s) 534
RsaI GTAC 4 cut(s) 299, 700, 734, 1172
RsaNI GTAC 4 cut(s) 298, 699, 733, 1171
RseI CAYNNNNRTG 1 cut(s) 1166
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 513, 1142, 1166, 1214
SatI GCNGC 3 cut(s) 137, 368, 690
Sau3AI GATC 5 cut(s) 19, 196, 501, 534, 948
SchI GAGTC 1 cut(s) 945
ScrFI CCNGG 2 cut(s) 445, 657
SduI GDGCHC 2 cut(s) 242, 582
SfaNI GCATC 4 cut(s) 449, 459, 829, 953
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SphI GCATGC 1 cut(s) 1392
Sse9I AATT 8 cut(s) 7, 68, 510, 740, 768, 1211, 1320, 1400
SsiI CCGC 4 cut(s) 525, 554, 825, 929
SspMI CTAG 4 cut(s) 222, 260, 983, 1443
StyD4I CCNGG 2 cut(s) 443, 655
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 8 cut(s) 343, 732, 889, 1061, 1175, 1221, 1285, 1438
TaiI ACGT 2 cut(s) 519, 738
TaqI TCGA 5 cut(s) 542, 722, 898, 947, 1398
TasI AATT 8 cut(s) 7, 68, 510, 740, 768, 1211, 1320, 1400
TfiI GAWTC 6 cut(s) 98, 104, 116, 130, 711, 828
Tru1I TTAA 4 cut(s) 513, 1142, 1166, 1214
Tru9I TTAA 4 cut(s) 513, 1142, 1166, 1214
TscAI CASTG 2 cut(s) 609, 1026
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 3 cut(s) 136, 367, 689
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 6 cut(s) 17, 237, 258, 600, 1095, 1349
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 2 cut(s) 609, 1026
Van91I CCANNNNNTGG 1 cut(s) 680
XapI RAATTY 2 cut(s) 68, 1400
XceI RCATGY 3 cut(s) 1082, 1243, 1392
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XspI CTAG 4 cut(s) 222, 260, 983, 1443
Zsp2I ATGCAT 2 cut(s) 1390, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.