Rh1CG290800

Amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
56429595 .. 56435516
5922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG290800.1

Sequence Viewer

Length: 1515 bp
ATGAGAATTTGTATCTTCAGCTCCAAATACTTACAGTTTTTTTATCACTGTTTCAGGCAATCCATAGACCTGTATAGTAGTGTACCATCCCCGGGTATTGGGTTTCTAGGCACTCCTTCACTGTCAAGATTAGGAAGCTCGTTTCTTTCCTCATCACTAACGAGAAGGCACACTCCCGAAACATTACCTTTTTTGACAAAACCTCCGGTACTAACCCTTGCTGAGCAACAACAGCAGAGACAAAGTTCTCATTCTCTACTTCCACCAATTCCTTCAAGGAGGTCTTCAGTTAAAAAAGATGATAAATCCAGGATTTCTCATGAACATCATCCAATGCCTCGCCACAGCTCATTCGCGCAAGCTGTGGTTAATGGAATCAATGTTCTTTGTGGAGTGGGAATTCTATCAACACCATATGCACTCAAGGAAGGAGGATGGATCGGGCTTTCCATTTTGTTTATTTTTGCAGTGCTGTCGTTCTACACTGGATTACTTCTGCGTTACTGCTTGGATAGTCAACCTGGGCTTGAGACTTACCCAGACATTGGCCAAGCTGCATTTGGTAACCCTGGCCGAATTGCTATCTCGATAGTACTGTACGTTGAATTATATGCTTGTTGCATAGAATATATAATCTTGGAGGGTGACAACTTGTCTTCGCTATTCCCAAATGCACACCTGAACTTGGGTGGATTTGAGTTAAATGCACACGTTTTGTTTGCAATTTTGACCGCCCTTGCTGTTCTACCTACTGTTTGGCTTCGAGACCTCAGTGTTCTTAGTTATATCTCAGCTGGTGGAGTTATTGCGTCGATCTTGGTAGTGCTTTGCTTGTTTTGGGTTGGTCTAGTAGATGGTGTTGGCTTTGAGAGCAAAGGGACTCCACTGAACCTCGCAACTCTTCCTGTTGCTATGGGTCTCTATGGTTACTGCTACTCAGGACACGCTGTATTCCCAAACATTTATACTTCATTGGAAAAACCAAACCAATACCCTGCAATTCTCTTAACATGCTTTTGCATATGTACTTTCATGTATGCTGGAGTTGCTGTCATGGGTTACACAATGTTTGGAGAAGCAACATTGTCACAGTTCACTCTCAACATGCCTCACAATTTGGTTGCCTCAAAGATCGCTGTGTGGACTACGGTAGTCAACCCATTTACCAAATATGCATTAACTATATCTCCCGTGGCAATGAGTCTGGAGGAGCTGGTACCATCAGACAAATCTCGCATGTACTCTATCTTTATTAGAACAGGGCTGGTGCTCTCTACCCTGGTGGTCGGTCTTTGTGTACCTTTCTTTGGTCTCATGATGTCATTGATCGGATCTTTATTCACAATGCTTGTAGCCTTGATACTTCCTTGTGCTTGTTATCTGAGTATCCTCAAGGGACGAGTAACTCGTTTTCAGATGATACTTTGTATTATAATTATTACAGTAGGTGTCGTAGCATCTGGTTTCGGAACATATTCAGCTGTAACTAAAATCGTAGAGAATTTGAGCAGCTGA

Protein Analysis

504

Amino Acids

54.97

Weight (kDa)

8.54

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 115 - 494 1.6e-68 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1433
Acc65I GGTACC 1 cut(s) 1216
AccB1I GGYRCC 1 cut(s) 1216
AccB7I CCANNNNNTGG 1 cut(s) 545
AccII CGCG 1 cut(s) 356
AciI CCGC 1 cut(s) 732
AclWI GGATC 2 cut(s) 446, 1339
AcoI YGGCCR 2 cut(s) 547, 571
AcsI RAATTY 3 cut(s) 6, 399, 1501
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 8 cut(s) 84, 210, 594, 599, 1027, 1218, 1241, 1299
AfiI CCNNNNNNNGG 5 cut(s) 92, 98, 545, 685, 1307
AflIII ACRYGT 1 cut(s) 709
AgsI TTSAA 2 cut(s) 276, 605
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 4 cut(s) 308, 520, 568, 1278
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 9 cut(s) 21, 138, 348, 362, 554, 794, 1213, 1481, 1512
AluI AGCT 9 cut(s) 21, 138, 348, 362, 554, 794, 1213, 1481, 1512
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 5 cut(s) 232, 524, 759, 923, 1316
AlwI GGATC 2 cut(s) 446, 1339
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 547, 571
ApeKI GCWGC 2 cut(s) 554, 1509
ApoI RAATTY 3 cut(s) 6, 399, 1501
Asp700I GAANNNNTTC 1 cut(s) 1474
Asp718I GGTACC 1 cut(s) 1216
AspLEI GCGC 1 cut(s) 358
AsuC2I CCSGG 2 cut(s) 92, 93
AsuHPI GGTGA 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 91
BalI TGGCCA 1 cut(s) 549
BanI GGYRCC 1 cut(s) 1216
BbsI GAAGAC 2 cut(s) 276, 648
Bbv12I GWGCWC 1 cut(s) 1272
BbvI GCAGC 1 cut(s) 541
BccI CCATC 4 cut(s) 94, 429, 848, 1228
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BciT130I CCWGG 4 cut(s) 310, 522, 570, 1280
BciVI GTATCC 1 cut(s) 1397
BcnI CCSGG 2 cut(s) 92, 93
BcoDI GTCTC 5 cut(s) 232, 524, 759, 923, 1316
BfaI CTAG 2 cut(s) 107, 848
BfuI GTATCC 1 cut(s) 1397
BisI GCNGC 2 cut(s) 555, 1510
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 2 cut(s) 556, 1511
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 6 cut(s) 92, 93, 310, 522, 570, 1280
BmeRI GACNNNNNGTC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 6 cut(s) 92, 93, 310, 522, 570, 1280
BmsI GCATC 1 cut(s) 1466
BpiI GAAGAC 2 cut(s) 276, 648
BpmI CTGGAG 2 cut(s) 1062, 1226
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 3 cut(s) 407, 548, 1376
BpuMI CCSGG 2 cut(s) 92, 93
BsaI GGTCTC 3 cut(s) 759, 923, 1316
BsaJI CCNNGG 6 cut(s) 90, 91, 521, 568, 1191, 1278
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 6 cut(s) 187, 217, 1035, 1065, 1171, 1201
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 98, 545, 685, 1307
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 4 cut(s) 310, 522, 570, 1280
BseDI CCNNGG 6 cut(s) 90, 91, 521, 568, 1191, 1278
BseGI GGATG 3 cut(s) 86, 328, 440
BseLI CCNNNNNNNGG 5 cut(s) 92, 98, 545, 685, 1307
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 5 cut(s) 213, 784, 804, 951, 1373
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 1223
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 549, 573
BshNI GGYRCC 1 cut(s) 1216
BsiHKAI GWGCWC 1 cut(s) 1272
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 92, 206
BslFI GGGAC 2 cut(s) 892, 1410
BslI CCNNNNNNNGG 5 cut(s) 92, 98, 545, 685, 1307
BsmAI GTCTC 5 cut(s) 232, 524, 759, 923, 1316
BsmFI GGGAC 2 cut(s) 892, 1410
BsnI GGCC 2 cut(s) 549, 573
Bso31I GGTCTC 3 cut(s) 759, 923, 1316
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp143I GATC 5 cut(s) 438, 813, 1131, 1326, 1331
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 732
BspANI GGCC 2 cut(s) 549, 573
BspCNI CTCAG 5 cut(s) 214, 783, 803, 950, 1374
BspFNI CGCG 1 cut(s) 356
BspHI TCATGA 2 cut(s) 319, 1314
BspLI GGNNCC 1 cut(s) 1218
BspPI GGATC 2 cut(s) 446, 1339
BspT107I GGYRCC 1 cut(s) 1216
BspTNI GGTCTC 3 cut(s) 759, 923, 1316
BsrDI GCAATG 1 cut(s) 1203
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 6 cut(s) 90, 91, 521, 568, 1191, 1278
BssMI GATC 5 cut(s) 438, 813, 1131, 1326, 1331
Bst2UI CCWGG 4 cut(s) 310, 522, 570, 1280
Bst4CI ACNGT 8 cut(s) 36, 50, 123, 597, 754, 1092, 1150, 1444
Bst6I CTCTTC 1 cut(s) 906
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 6 cut(s) 222, 770, 779, 790, 937, 1382
BstDSI CCRYGG 1 cut(s) 1191
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 3 cut(s) 86, 328, 440
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 5 cut(s) 441, 816, 1134, 1329, 1334
BstMAI GTCTC 5 cut(s) 232, 524, 759, 923, 1316
BstMBI GATC 5 cut(s) 438, 813, 1131, 1326, 1331
BstMWI GCNNNNNNNGC 3 cut(s) 232, 870, 1046
BstNI CCWGG 4 cut(s) 310, 522, 570, 1280
BstNSI RCATGY 3 cut(s) 1014, 1108, 1240
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 6 cut(s) 90, 91, 308, 520, 568, 1278
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 541
BstV2I GAAGAC 2 cut(s) 276, 648
BstX2I RGATCY 1 cut(s) 1331
BstYI RGATCY 1 cut(s) 1331
BsuI GTATCC 1 cut(s) 1397
BsuRI GGCC 2 cut(s) 549, 573
BtgI CCRYGG 1 cut(s) 1191
BtsCI GGATG 3 cut(s) 86, 328, 440
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 6 cut(s) 46, 119, 474, 483, 778, 884
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 2 cut(s) 319, 1314
CfoI GCGC 1 cut(s) 358
Cfr9I CCCGGG 1 cut(s) 91
CseI GACGC 1 cut(s) 798
Csp6I GTAC 8 cut(s) 83, 209, 593, 598, 1026, 1217, 1240, 1298
CviAII CATG 7 cut(s) 320, 1011, 1033, 1054, 1105, 1237, 1315
CviQI GTAC 8 cut(s) 83, 209, 593, 598, 1026, 1217, 1240, 1298
DdeI CTNAG 6 cut(s) 222, 770, 779, 790, 937, 1382
DpnI GATC 5 cut(s) 440, 815, 1133, 1328, 1333
DpnII GATC 5 cut(s) 438, 813, 1131, 1326, 1331
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 547, 571
Eam1104I CTCTTC 1 cut(s) 906
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 906
Eco31I GGTCTC 3 cut(s) 759, 923, 1316
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 91
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 4 cut(s) 308, 520, 568, 1278
EcoT22I ATGCAT 1 cut(s) 1177
FaeI CATG 7 cut(s) 323, 1014, 1036, 1057, 1108, 1240, 1318
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 2 cut(s) 892, 1410
FatI CATG 7 cut(s) 319, 1010, 1032, 1053, 1104, 1236, 1314
FauNDI CATATG 2 cut(s) 415, 1022
Fnu4HI GCNGC 2 cut(s) 555, 1510
FokI GGATG 3 cut(s) 73, 315, 447
Fsp4HI GCNGC 2 cut(s) 555, 1510
FspBI CTAG 2 cut(s) 107, 848
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 555, 1510
GsuI CTGGAG 2 cut(s) 1062, 1226
HaeIII GGCC 2 cut(s) 549, 573
HapII CCGG 2 cut(s) 92, 206
HgaI GACGC 1 cut(s) 798
HhaI GCGC 1 cut(s) 358
Hin1II CATG 7 cut(s) 323, 1014, 1036, 1057, 1108, 1240, 1318
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 2 cut(s) 518, 1156
HindII GTYRAC 2 cut(s) 518, 1156
HinfI GANTC 3 cut(s) 375, 880, 1201
HpaII CCGG 2 cut(s) 92, 206
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 6 cut(s) 83, 518, 1095, 1143, 1156, 1298
Hpy188I TCNGA 5 cut(s) 1225, 1331, 1383, 1416, 1469
Hpy188III TCNNGA 8 cut(s) 126, 176, 320, 586, 764, 939, 1205, 1315
Hpy8I GTNNAC 6 cut(s) 83, 518, 1095, 1143, 1156, 1298
Hpy99I CGWCG 1 cut(s) 814
HpyAV CCTTC 4 cut(s) 126, 159, 282, 422
HpyCH4III ACNGT 8 cut(s) 36, 50, 123, 597, 754, 1092, 1150, 1444
HpyCH4IV ACGT 2 cut(s) 600, 711
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 870, 1046
HpyF3I CTNAG 6 cut(s) 222, 770, 779, 790, 937, 1382
HpySE526I ACGT 2 cut(s) 600, 711
Hsp92II CATG 7 cut(s) 323, 1014, 1036, 1057, 1108, 1240, 1318
HspAI GCGC 1 cut(s) 356
KpnI GGTACC 1 cut(s) 1220
Kzo9I GATC 5 cut(s) 438, 813, 1131, 1326, 1331
LmnI GCTCC 2 cut(s) 26, 1210
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 1 cut(s) 1466
MaeI CTAG 2 cut(s) 107, 848
MaeII ACGT 2 cut(s) 600, 711
MaeIII GTNAC 8 cut(s) 500, 563, 644, 926, 1058, 1086, 1402, 1483
MalI GATC 5 cut(s) 440, 815, 1133, 1328, 1333
MboI GATC 5 cut(s) 438, 813, 1131, 1326, 1331
MboII GAAGA 4 cut(s) 7, 276, 648, 893
MflI RGATCY 1 cut(s) 1331
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 1 cut(s) 549
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 2 cut(s) 874, 1210
Mox20I TGGCCA 1 cut(s) 549
Mph1103I ATGCAT 1 cut(s) 1177
MroXI GAANNNNTTC 1 cut(s) 1474
MscI TGGCCA 1 cut(s) 549
MseI TTAA 5 cut(s) 291, 369, 701, 1007, 1178
Msp20I TGGCCA 1 cut(s) 549
MspA1I CMGCKG 3 cut(s) 794, 1481, 1512
MspI CCGG 2 cut(s) 92, 206
MspR9I CCNGG 6 cut(s) 92, 93, 310, 522, 570, 1280
MvaI CCWGG 4 cut(s) 310, 522, 570, 1280
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 232, 870, 1046
NciI CCSGG 2 cut(s) 92, 93
NdeI CATATG 2 cut(s) 415, 1022
NdeII GATC 5 cut(s) 438, 813, 1131, 1326, 1331
NlaIII CATG 7 cut(s) 323, 1014, 1036, 1057, 1108, 1240, 1318
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 2 cut(s) 644, 1086
NsiI ATGCAT 1 cut(s) 1177
NspI RCATGY 3 cut(s) 1014, 1108, 1240
PagI TCATGA 2 cut(s) 319, 1314
PcsI WCGNNNNNNNCGW 1 cut(s) 1405
PdmI GAANNNNTTC 1 cut(s) 1474
PfeI GAWTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 545
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 2 cut(s) 556, 1511
PleI GAGTC 2 cut(s) 874, 1209
PpsI GAGTC 2 cut(s) 874, 1209
PsiI TTATAA 1 cut(s) 1433
Psp6I CCWGG 4 cut(s) 308, 520, 568, 1278
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 4 cut(s) 308, 520, 568, 1278
PspN4I GGNNCC 1 cut(s) 1218
PsuI RGATCY 1 cut(s) 1331
PvuII CAGCTG 3 cut(s) 794, 1481, 1512
RsaI GTAC 8 cut(s) 84, 210, 594, 599, 1027, 1218, 1241, 1299
RsaNI GTAC 8 cut(s) 83, 209, 593, 598, 1026, 1217, 1240, 1298
SaqAI TTAA 5 cut(s) 291, 369, 701, 1007, 1178
SatI GCNGC 2 cut(s) 555, 1510
Sau3AI GATC 5 cut(s) 438, 813, 1131, 1326, 1331
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 2 cut(s) 874, 1210
ScrFI CCNGG 6 cut(s) 92, 93, 310, 522, 570, 1280
SduI GDGCHC 1 cut(s) 1272
SfaNI GCATC 1 cut(s) 1466
SmaI CCCGGG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 422, 527, 1391
SmoI CTYRAG 3 cut(s) 422, 527, 1391
SsiI CCGC 1 cut(s) 732
SspMI CTAG 2 cut(s) 107, 848
StyD4I CCNGG 6 cut(s) 90, 91, 308, 520, 568, 1278
TaaI ACNGT 8 cut(s) 36, 50, 123, 597, 754, 1092, 1150, 1444
TaiI ACGT 2 cut(s) 603, 714
TaqI TCGA 3 cut(s) 587, 763, 812
TaqII GACCGA 1 cut(s) 1277
TatI WGTACW 3 cut(s) 592, 1025, 1239
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 5 cut(s) 291, 369, 701, 1007, 1178
Tru9I TTAA 5 cut(s) 291, 369, 701, 1007, 1178
TscAI CASTG 6 cut(s) 53, 126, 474, 490, 778, 891
TseFI GTSAC 2 cut(s) 644, 1086
TseI GCWGC 2 cut(s) 554, 1509
Tsp45I GTSAC 2 cut(s) 644, 1086
TspDTI ATGAA 3 cut(s) 336, 960, 1021
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 6 cut(s) 53, 126, 474, 490, 778, 891
Van91I CCANNNNNTGG 1 cut(s) 545
XapI RAATTY 3 cut(s) 6, 399, 1501
XceI RCATGY 3 cut(s) 1014, 1108, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmaI CCCGGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 1474
XspI CTAG 2 cut(s) 107, 848
ZrmI AGTACT 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.