AT2G39790

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008278
Physical Location & Seq
Forward (+)
16594833 .. 16595800
968 bp
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UTR
Exon/CDS
Intron
AT2G39790.1

Sequence Viewer

Length: 723 bp
ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAAGCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTGAGTCCTTTCGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATAAGCTGAGCTCTGAGCAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCCCAATTTGAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAGAGACAAGCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGACGAACGTATTCATGTTGATGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGAACTAAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTACCTGCCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATTATCAGTATCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGCGTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTTGCATAAGTACATGGTGAGCAAAATAAAGAGAGAGTACTTGCTATGGTTGAAGAATGTTAACAAGTTTGTGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

240

Amino Acids

27.13

Weight (kDa)

5.74

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 80 - 238 2.2e-21 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 15, 482
AciI CCGC 3 cut(s) 48, 75, 116
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 605
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 21, 653, 680
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 247, 280, 565, 694
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 3 cut(s) 262, 295, 477
AluBI AGCT 4 cut(s) 169, 174, 211, 270
AluI AGCT 4 cut(s) 169, 174, 211, 270
Alw21I GWGCWC 2 cut(s) 176, 213
Alw26I GTCTC 4 cut(s) 99, 117, 136, 282
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 554
Asp700I GAANNNNTTC 2 cut(s) 342, 593
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 182, 386, 670
AvaII GGWCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 176, 213
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 176, 213
BccI CCATC 3 cut(s) 148, 250, 710
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 3 cut(s) 264, 297, 479
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 4 cut(s) 99, 117, 136, 282
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 1 cut(s) 428
BfuAI ACCTGC 2 cut(s) 15, 482
BlpI GCTNAGC 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 4 cut(s) 64, 264, 297, 479
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 4 cut(s) 64, 264, 297, 479
BmsI GCATC 1 cut(s) 41
BpmI CTGGAG 2 cut(s) 246, 318
Bpu1102I GCTNAGC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 557
BseBI CCWGG 3 cut(s) 264, 297, 479
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 3 cut(s) 110, 161, 168
BseNI ACTGG 1 cut(s) 557
BshFI GGCC 1 cut(s) 556
BsiHKAI GWGCWC 2 cut(s) 176, 213
BsiSI CCGG 1 cut(s) 64
BsiWI CGTACG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 4 cut(s) 99, 117, 136, 282
BsmBI CGTCTC 3 cut(s) 99, 117, 136
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 176, 213
Bsp143I GATC 2 cut(s) 235, 301
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 3 cut(s) 48, 75, 116
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 3 cut(s) 111, 162, 169
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 2 cut(s) 15, 482
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 557
BssMI GATC 2 cut(s) 235, 301
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 264, 297, 479
Bst4CI ACNGT 3 cut(s) 89, 439, 517
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 5 cut(s) 36, 119, 170, 177, 416
BstF5I GGATG 1 cut(s) 721
BstKTI GATC 2 cut(s) 238, 304
BstMAI GTCTC 4 cut(s) 99, 117, 136, 282
BstMBI GATC 2 cut(s) 235, 301
BstNI CCWGG 3 cut(s) 264, 297, 479
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 4 cut(s) 62, 262, 295, 477
BsuRI GGCC 1 cut(s) 556
BtsCI GGATG 1 cut(s) 721
BveI ACCTGC 2 cut(s) 15, 482
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 632
Csp6I GTAC 3 cut(s) 20, 652, 679
CviAII CATG 4 cut(s) 51, 347, 521, 655
CviQI GTAC 3 cut(s) 20, 652, 679
DdeI CTNAG 5 cut(s) 36, 119, 170, 177, 416
DpnI GATC 2 cut(s) 237, 303
DpnII GATC 2 cut(s) 235, 301
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 174, 211
Eco24I GRGCYC 2 cut(s) 176, 213
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 2 cut(s) 174, 211
Eco57I CTGAAG 1 cut(s) 605
EcoICRI GAGCTC 2 cut(s) 174, 211
EcoRII CCWGG 3 cut(s) 262, 295, 477
EcoT38I GRGCYC 2 cut(s) 176, 213
Esp3I CGTCTC 3 cut(s) 99, 117, 136
FaeI CATG 4 cut(s) 54, 350, 524, 658
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FatI CATG 4 cut(s) 50, 346, 520, 654
FriOI GRGCYC 2 cut(s) 176, 213
FspBI CTAG 1 cut(s) 428
GsuI CTGGAG 2 cut(s) 246, 318
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 64
HgaI GACGC 1 cut(s) 632
Hin1II CATG 4 cut(s) 54, 350, 524, 658
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 3 cut(s) 121, 203, 456
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 1 cut(s) 64
HphI GGTGA 3 cut(s) 182, 386, 670
Hpy166II GTNNAC 3 cut(s) 85, 471, 703
Hpy188I TCNGA 4 cut(s) 178, 208, 306, 585
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 3 cut(s) 85, 471, 703
HpyAV CCTTC 2 cut(s) 197, 583
HpyCH4III ACNGT 3 cut(s) 89, 439, 517
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 226, 520, 646
HpyF3I CTNAG 5 cut(s) 36, 119, 170, 177, 416
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 4 cut(s) 54, 350, 524, 658
KspAI GTTAAC 1 cut(s) 703
Kzo9I GATC 2 cut(s) 235, 301
LmnI GCTCC 1 cut(s) 265
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 310, 433
MalI GATC 2 cut(s) 237, 303
MboI GATC 2 cut(s) 235, 301
MboII GAAGA 4 cut(s) 263, 460, 598, 706
MhlI GDGCHC 2 cut(s) 176, 213
MluCI AATT 3 cut(s) 214, 241, 282
MlyI GAGTC 3 cut(s) 130, 197, 465
MnlI CCTC 1 cut(s) 567
MroXI GAANNNNTTC 2 cut(s) 342, 593
MseI TTAA 3 cut(s) 503, 512, 702
MslI CAYNNNNRTG 2 cut(s) 351, 389
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 4 cut(s) 64, 264, 297, 479
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 3 cut(s) 264, 297, 479
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 235, 301
NlaIII CATG 4 cut(s) 54, 350, 524, 658
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 54
PctI GAATGC 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 342, 593
Pfl23II CGTACG 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 262
PleI GAGTC 3 cut(s) 129, 197, 464
PpsI GAGTC 3 cut(s) 129, 197, 464
Psp124BI GAGCTC 2 cut(s) 176, 213
Psp6I CCWGG 3 cut(s) 262, 295, 477
PspGI CCWGG 3 cut(s) 262, 295, 477
PspLI CGTACG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 398
RsaI GTAC 3 cut(s) 21, 653, 680
RsaNI GTAC 3 cut(s) 20, 652, 679
RseI CAYNNNNRTG 2 cut(s) 351, 389
SacI GAGCTC 2 cut(s) 176, 213
SaqAI TTAA 3 cut(s) 503, 512, 702
Sau3AI GATC 2 cut(s) 235, 301
Sau96I GGNCC 1 cut(s) 398
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 3 cut(s) 130, 197, 465
ScrFI CCNGG 4 cut(s) 64, 264, 297, 479
SduI GDGCHC 2 cut(s) 176, 213
SetI ASST 9 cut(s) 29, 171, 176, 195, 213, 272, 343, 476, 605
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 351, 389
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 3 cut(s) 214, 241, 282
SsiI CCGC 3 cut(s) 48, 75, 116
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 2 cut(s) 176, 213
StyD4I CCNGG 4 cut(s) 62, 262, 295, 477
TaaI ACNGT 3 cut(s) 89, 439, 517
TaiI ACGT 1 cut(s) 343
TasI AATT 3 cut(s) 214, 241, 282
TatI WGTACW 2 cut(s) 651, 678
Tru1I TTAA 3 cut(s) 503, 512, 702
Tru9I TTAA 3 cut(s) 503, 512, 702
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 264, 335, 426
TspGWI ACGGA 2 cut(s) 81, 468
VpaK11BI GGWCC 1 cut(s) 398
XceI RCATGY 1 cut(s) 54
XmnI GAANNNNTTC 2 cut(s) 342, 593
XspI CTAG 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.