AT2G39795

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008278
Physical Location & Seq
Forward (+)
16596838 .. 16598162
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39795.1

Sequence Viewer

Length: 753 bp
ATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTAAGTTTGCTTCCGTTTATGGTGGCCGAGTCCGATCTATCTCCGCCGTTGCGAACCGCGCCTCTCTAGCTCGCAACCCATCTTCAATTCGTCCATTCGTCTCTCGCGCCTTAAATTACTCGACGGCTATTGATCGAATTAGCTCCGAGCAAACGCTTATCCGAGTTATTGACTCCGAAATCAACTCTGCTTTGCAATCCGATAATATCGATTCGGATGAAGAGATGACTCCAGGAAGCTTTCCTTTTAGAATTGAAGACAAACCTGGAAATCAGAATGTTACATTGACTAGAGACTACAATGGGGAACATATTAAAGTTGTTGTAAGCATGCCTAGTCTTGTTTCAGATGAAAATGATGATGATGATGATGATGATGAAGGTCCTAGTAATGAATCGAGTATTCCACTAGTTGTGACTGTTACTAAGAAGAGTGGACTCACTCTAGAGTTTAGCTGTATGGCTTTTCCTGATGAGATTGCTATAGATGCTTTATCTGTGAAACATCCTGGGGACTCTTTGGAGGATCAACTGGCTAATGAAGGGCCTGATTTTGAAGACTTGGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAGATCAGAGGAGTGAAAGCTAGCACGACGAATTTCCTGCACGAGTACATGACGAGGAAAGTGAACCGAGAGTACTTTTTATGGTTGAAGAATGTTAAGGAGTTCATGGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

250

Amino Acids

28.06

Weight (kDa)

4.71

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 70 - 248 1.1e-43 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccII CGCG 2 cut(s) 96, 144
AciI CCGC 2 cut(s) 81, 94
AclWI GGATC 1 cut(s) 570
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 3 cut(s) 24, 683, 710
AgsI TTSAA 4 cut(s) 123, 293, 593, 724
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 3 cut(s) 268, 301, 544
AluBI AGCT 6 cut(s) 11, 107, 180, 276, 492, 656
AluI AGCT 6 cut(s) 11, 107, 180, 276, 492, 656
Alw26I GTCTC 2 cut(s) 142, 324
AlwI GGATC 1 cut(s) 570
AoxI GGCC 2 cut(s) 61, 581
ApoI RAATTY 1 cut(s) 667
Asp700I GAANNNNTTC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 98, 146
AspS9I GGNCC 2 cut(s) 419, 581
AsuNHI GCTAGC 1 cut(s) 656
AvaII GGWCC 1 cut(s) 419
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BauI CACGAG 1 cut(s) 677
BbsI GAAGAC 3 cut(s) 300, 600, 623
BccI CCATC 1 cut(s) 124
BceAI ACGGC 2 cut(s) 68, 177
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 3 cut(s) 270, 303, 546
BcoDI GTCTC 2 cut(s) 142, 324
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 7 cut(s) 104, 327, 372, 423, 446, 482, 657
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 3 cut(s) 270, 303, 546
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 419, 581
BmrFI CCNGG 3 cut(s) 270, 303, 546
BmsI GCATC 2 cut(s) 44, 514
BmtI GCTAGC 1 cut(s) 660
BpiI GAAGAC 3 cut(s) 300, 600, 623
BpmI CTGGAG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 573
BseBI CCWGG 3 cut(s) 270, 303, 546
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 259, 541
BseNI ACTGG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 660
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 2 cut(s) 96, 144
BshFI GGCC 2 cut(s) 63, 583
BshVI ATCGAT 1 cut(s) 246
BslFI GGGAC 1 cut(s) 563
BsmAI GTCTC 2 cut(s) 142, 324
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 2 cut(s) 63, 583
Bsp143I GATC 4 cut(s) 71, 169, 562, 639
BspACI CCGC 2 cut(s) 81, 94
BspANI GGCC 2 cut(s) 63, 583
BspDI ATCGAT 1 cut(s) 246
BspFNI CGCG 2 cut(s) 96, 144
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 660
BspPI GGATC 1 cut(s) 570
BsrI ACTGG 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 4 cut(s) 71, 169, 562, 639
BssSI CACGAG 1 cut(s) 677
Bst2BI CACGAG 1 cut(s) 677
Bst2UI CCWGG 3 cut(s) 270, 303, 546
Bst4CI ACNGT 2 cut(s) 457, 750
Bst6I CTCTTC 2 cut(s) 252, 461
BstC8I GCNNGC 3 cut(s) 109, 368, 658
BstDEI CTNAG 2 cut(s) 39, 462
BstF5I GGATG 2 cut(s) 259, 541
BstFNI CGCG 2 cut(s) 96, 144
BstHHI GCGC 2 cut(s) 98, 146
BstKTI GATC 4 cut(s) 74, 172, 565, 642
BstMAI GTCTC 2 cut(s) 142, 324
BstMBI GATC 4 cut(s) 71, 169, 562, 639
BstMWI GCNNNNNNNGC 4 cut(s) 24, 95, 104, 524
BstNI CCWGG 3 cut(s) 270, 303, 546
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 3 cut(s) 268, 301, 544
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 2 cut(s) 96, 144
BstV2I GAAGAC 3 cut(s) 300, 600, 623
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 2 cut(s) 63, 583
BsuTUI ATCGAT 1 cut(s) 246
BtsCI GGATG 2 cut(s) 259, 541
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 109, 368, 658
CfoI GCGC 2 cut(s) 98, 146
Cfr13I GGNCC 2 cut(s) 419, 581
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 3 cut(s) 23, 682, 709
CviAII CATG 3 cut(s) 367, 685, 742
CviQI GTAC 3 cut(s) 23, 682, 709
DdeI CTNAG 2 cut(s) 39, 462
DpnI GATC 4 cut(s) 73, 171, 564, 641
DpnII GATC 4 cut(s) 71, 169, 562, 639
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 252, 461
EarI CTCTTC 2 cut(s) 252, 461
EciI GGCGGA 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 632
EcoO109I RGGNCCY 2 cut(s) 419, 581
EcoRII CCWGG 3 cut(s) 268, 301, 544
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 3 cut(s) 370, 688, 745
FaiI YATR 8 cut(s) 57, 348, 368, 497, 521, 686, 718, 743
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 563
FatI CATG 3 cut(s) 366, 684, 741
FokI GGATG 2 cut(s) 266, 528
FspBI CTAG 7 cut(s) 104, 327, 372, 423, 446, 482, 657
GlaI GCGC 2 cut(s) 97, 145
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 63, 583
HhaI GCGC 2 cut(s) 98, 146
Hin1II CATG 3 cut(s) 370, 688, 745
Hin6I GCGC 2 cut(s) 96, 144
HinP1I GCGC 2 cut(s) 96, 144
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 8 cut(s) 66, 209, 248, 265, 431, 474, 551, 607
Hpy166II GTNNAC 2 cut(s) 473, 700
Hpy188III TCNNGA 2 cut(s) 482, 506
Hpy8I GTNNAC 2 cut(s) 473, 700
Hpy99I CGWCG 2 cut(s) 163, 667
HpyAV CCTTC 2 cut(s) 410, 572
HpyCH4III ACNGT 2 cut(s) 457, 750
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 2 cut(s) 232, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 95, 104, 524
HpyF3I CTNAG 2 cut(s) 39, 462
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 3 cut(s) 370, 688, 745
HspAI GCGC 2 cut(s) 96, 144
Kzo9I GATC 4 cut(s) 71, 169, 562, 639
LmnI GCTCC 1 cut(s) 185
LweI GCATC 2 cut(s) 44, 514
MaeI CTAG 7 cut(s) 104, 327, 372, 423, 446, 482, 657
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 3 cut(s) 316, 451, 457
MalI GATC 4 cut(s) 73, 171, 564, 641
MboI GATC 4 cut(s) 71, 169, 562, 639
MboII GAAGA 8 cut(s) 111, 269, 305, 478, 605, 625, 628, 736
MluCI AATT 5 cut(s) 123, 151, 174, 288, 667
MlyI GAGTC 5 cut(s) 75, 203, 259, 468, 545
MnlI CCTC 4 cut(s) 109, 553, 638, 684
MroXI GAANNNNTTC 1 cut(s) 620
MseI TTAA 3 cut(s) 149, 351, 732
MspR9I CCNGG 3 cut(s) 270, 303, 546
MvaI CCWGG 3 cut(s) 270, 303, 546
MvnI CGCG 2 cut(s) 96, 144
MwoI GCNNNNNNNGC 4 cut(s) 24, 95, 104, 524
NdeII GATC 4 cut(s) 71, 169, 562, 639
NheI GCTAGC 1 cut(s) 656
NlaIII CATG 3 cut(s) 370, 688, 745
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 3 cut(s) 248, 431, 607
PfoI TCCNGGA 1 cut(s) 268
PleI GAGTC 5 cut(s) 74, 203, 259, 468, 545
PpsI GAGTC 5 cut(s) 74, 203, 259, 468, 545
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 268, 301, 544
PspGI CCWGG 3 cut(s) 268, 301, 544
PspPI GGNCC 2 cut(s) 419, 581
PspPPI RGGWCCY 1 cut(s) 419
PsrI GAACNNNNNNTAC 2 cut(s) 692, 724
RsaI GTAC 3 cut(s) 24, 683, 710
RsaNI GTAC 3 cut(s) 23, 682, 709
SaqAI TTAA 3 cut(s) 149, 351, 732
Sau3AI GATC 4 cut(s) 71, 169, 562, 639
Sau96I GGNCC 2 cut(s) 419, 581
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 5 cut(s) 75, 203, 259, 468, 545
ScrFI CCNGG 3 cut(s) 270, 303, 546
SfaNI GCATC 2 cut(s) 44, 514
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 445
SphI GCATGC 1 cut(s) 370
Sse9I AATT 5 cut(s) 123, 151, 174, 288, 667
SsiI CCGC 2 cut(s) 81, 94
SspMI CTAG 7 cut(s) 104, 327, 372, 423, 446, 482, 657
StyD4I CCNGG 3 cut(s) 268, 301, 544
TaaI ACNGT 2 cut(s) 457, 750
TaiI ACGT 1 cut(s) 623
TaqI TCGA 4 cut(s) 158, 172, 246, 434
TasI AATT 5 cut(s) 123, 151, 174, 288, 667
TatI WGTACW 2 cut(s) 681, 708
TfiI GAWTC 3 cut(s) 248, 431, 607
Tru1I TTAA 3 cut(s) 149, 351, 732
Tru9I TTAA 3 cut(s) 149, 351, 732
TseFI GTSAC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 6 cut(s) 270, 402, 429, 444, 591, 730
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 667
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 7 cut(s) 104, 327, 372, 423, 446, 482, 657
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.