Rh1DG344600

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008278
Physical Location & Seq
Forward (+)
56848812 .. 56850424
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG344600.1

Sequence Viewer

Length: 600 bp
ATGGCTTTCACTTCCATCCTTCGCAGATCGGCCTCATCTCTGGCCCCACTAGCCACCCGGCTTGTCCGCGGCCAACGAAACTACCACGCCGCCGTCATCACCGCCATAAACCACTCCAGCTTCGCCGGCCGGAAGCCCTCCTCTCTGAGCCCTCTGGTTCCAAACCCTCGCTACTATTCCAAGGCCGACGACAGCCTTCTCCGAGTCATCGACGCCGAGATTCAGTGCGCCGAGGAGACCGATGATCAGGAGATTGAAGAGGTTCCGAGTGGTTTCTCTTTTAAGATAGAAGATGAGCCTGGATTTCAGACTGTGAAACTGAGGAGAACTTATCAAGATGAAGAGATTGAAGTGGAAGTTCACATGCCTGATCTAGTTACTGGCGAAGGTGAGGATGATGATGTGGATGATGATGGTAACGAACACGCCAATCAATCGAGCATCCCATTGGTCGTGAGCGTCTCCAAGGGTAGTGGCGCGCCTATTCTAGAGTTTAGCTGCAATGCTTTCCCTGATGAGATTGCAATTGAGAGCTTGGTTGTTAAGAATCCCAATACTTCTGAGGATCAAATCCCCTACGAGGGGCCTGACTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

199

Amino Acids

21.9

Weight (kDa)

4.34

Isoelectric Point (pI)

58.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 71 - 199 7.1e-22 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 69, 479
AciI CCGC 4 cut(s) 67, 69, 90, 102
AclWI GGATC 1 cut(s) 573
AcoI YGGCCR 2 cut(s) 70, 127
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 580, 581, 582
AgsI TTSAA 2 cut(s) 257, 350
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 3 cut(s) 120, 498, 534
AluI AGCT 3 cut(s) 120, 498, 534
Alw26I GTCTC 2 cut(s) 230, 466
AlwI GGATC 1 cut(s) 573
AoxI GGCC 6 cut(s) 30, 42, 70, 127, 183, 584
ApeKI GCWGC 1 cut(s) 498
AscI GGCGCGCC 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 3 cut(s) 230, 479, 481
AspS9I GGNCC 2 cut(s) 43, 584
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 91, 401
BanII GRGCYC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 485
BccI CCATC 2 cut(s) 23, 407
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 230, 466
BfaI CTAG 3 cut(s) 50, 374, 488
BisI GCNGC 3 cut(s) 70, 90, 499
BlsI GCNGC 3 cut(s) 71, 91, 500
Bme1390I CCNGG 2 cut(s) 58, 300
BmgT120I GGNCC 2 cut(s) 43, 584
BmiI GGNNCC 4 cut(s) 45, 159, 264, 585
BmrFI CCNGG 2 cut(s) 58, 300
BmsI GCATC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 67, 180, 231, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 580, 581, 582
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 385, 595
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 67, 180, 231, 465
BseGI GGATG 4 cut(s) 15, 400, 412, 441
BseLI CCNNNNNNNGG 3 cut(s) 580, 581, 582
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 137, 311, 552
BseNI ACTGG 2 cut(s) 385, 595
BsePI GCGCGC 1 cut(s) 477
BseRI GAGGAG 3 cut(s) 130, 248, 337
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 485
Bsh1236I CGCG 2 cut(s) 69, 479
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 6 cut(s) 32, 44, 72, 129, 185, 586
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 3 cut(s) 58, 126, 130
BslI CCNNNNNNNGG 3 cut(s) 580, 581, 582
BsmAI GTCTC 2 cut(s) 230, 466
BsmBI CGTCTC 1 cut(s) 466
BsnI GGCC 6 cut(s) 32, 44, 72, 129, 185, 586
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 4 cut(s) 26, 244, 370, 565
BspACI CCGC 4 cut(s) 67, 69, 90, 102
BspANI GGCC 6 cut(s) 32, 44, 72, 129, 185, 586
BspCNI CTCAG 3 cut(s) 138, 312, 553
BspFNI CGCG 2 cut(s) 69, 479
BspLI GGNNCC 4 cut(s) 45, 159, 264, 585
BspPI GGATC 1 cut(s) 573
BspTNI GGTCTC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 2 cut(s) 385, 595
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 67, 180, 231, 465
BssHII GCGCGC 1 cut(s) 477
BssMI GATC 4 cut(s) 26, 244, 370, 565
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 180, 465
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 252, 336
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 127, 479
BstDEI CTNAG 3 cut(s) 146, 320, 561
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 4 cut(s) 15, 400, 412, 441
BstFNI CGCG 2 cut(s) 69, 479
BstHHI GCGC 3 cut(s) 230, 479, 481
BstKTI GATC 4 cut(s) 29, 247, 373, 568
BstMAI GTCTC 2 cut(s) 230, 466
BstMBI GATC 4 cut(s) 26, 244, 370, 565
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 50, 126
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 56, 298
BstUI CGCG 2 cut(s) 69, 479
BstV1I GCAGC 1 cut(s) 485
BstZI CGGCCG 1 cut(s) 127
BsuRI GGCC 6 cut(s) 32, 44, 72, 129, 185, 586
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 4 cut(s) 15, 400, 412, 441
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 127, 479
CfoI GCGC 3 cut(s) 230, 479, 481
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 43, 584
Cfr42I CCGCGG 1 cut(s) 70
CseI GACGC 2 cut(s) 221, 448
CspCI CAANNNNNGTGG 4 cut(s) 43, 78, 454, 489
CviAII CATG 1 cut(s) 364
DdeI CTNAG 3 cut(s) 146, 320, 561
DpnI GATC 4 cut(s) 28, 246, 372, 567
DpnII GATC 4 cut(s) 26, 244, 370, 565
EaeI YGGCCR 2 cut(s) 70, 127
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 252, 336
EarI CTCTTC 2 cut(s) 252, 336
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 180, 465
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 180, 465
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 2 cut(s) 180, 465
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 1 cut(s) 367
FaiI YATR 2 cut(s) 107, 365
FatI CATG 1 cut(s) 363
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 70, 90, 499
FokI GGATG 4 cut(s) 2, 407, 419, 428
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 70, 90, 499
FspBI CTAG 3 cut(s) 50, 374, 488
GlaI GCGC 3 cut(s) 229, 478, 480
GluI GCNGC 3 cut(s) 70, 90, 499
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 6 cut(s) 32, 44, 72, 129, 185, 586
HapII CCGG 3 cut(s) 58, 126, 130
HgaI GACGC 2 cut(s) 221, 448
HhaI GCGC 3 cut(s) 230, 479, 481
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 3 cut(s) 228, 477, 479
HinP1I GCGC 3 cut(s) 228, 477, 479
HinfI GANTC 3 cut(s) 204, 220, 547
HpaII CCGG 3 cut(s) 58, 126, 130
HphI GGTGA 2 cut(s) 91, 401
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 147, 203, 267, 309, 562
Hpy188III TCNNGA 4 cut(s) 248, 335, 454, 488
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 2 cut(s) 191, 215
HpyAV CCTTC 3 cut(s) 29, 206, 380
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 2 cut(s) 501, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 126
HpyF3I CTNAG 3 cut(s) 146, 320, 561
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 3 cut(s) 228, 477, 479
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 244
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 4 cut(s) 26, 244, 370, 565
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 1 cut(s) 450
MaeI CTAG 3 cut(s) 50, 374, 488
MaeIII GTNAC 2 cut(s) 376, 416
MalI GATC 4 cut(s) 28, 246, 372, 567
MboI GATC 4 cut(s) 26, 244, 370, 565
MboII GAAGA 3 cut(s) 269, 302, 353
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 525
MlyI GAGTC 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 2 cut(s) 282, 543
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 58, 126, 130
MspR9I CCNGG 2 cut(s) 58, 300
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 2 cut(s) 69, 479
MwoI GCNNNNNNNGC 2 cut(s) 50, 126
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 58
NdeII GATC 4 cut(s) 26, 244, 370, 565
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 4 cut(s) 45, 159, 264, 585
NmeAIII GCCGAG 2 cut(s) 241, 256
NspI RCATGY 1 cut(s) 367
PalAI GGCGCGCC 1 cut(s) 477
PauI GCGCGC 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 220, 547
PkrI GCNGC 3 cut(s) 71, 91, 500
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 45, 159, 264, 585
PspPI GGNCC 2 cut(s) 43, 584
PteI GCGCGC 1 cut(s) 477
SacII CCGCGG 1 cut(s) 70
SaqAI TTAA 2 cut(s) 282, 543
SatI GCNGC 3 cut(s) 70, 90, 499
Sau3AI GATC 4 cut(s) 26, 244, 370, 565
Sau96I GGNCC 2 cut(s) 43, 584
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 58, 300
SduI GDGCHC 1 cut(s) 152
SetI ASST 5 cut(s) 122, 264, 391, 500, 536
SfaNI GCATC 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 70
SgsI GGCGCGCC 1 cut(s) 477
Sse9I AATT 1 cut(s) 525
SsiI CCGC 4 cut(s) 67, 69, 90, 102
SspMI CTAG 3 cut(s) 50, 374, 488
StyD4I CCNGG 2 cut(s) 56, 298
StyI CCWWGG 2 cut(s) 180, 465
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 210, 437
TaqII GACCGA 1 cut(s) 254
TasI AATT 1 cut(s) 525
TauI GCSGC 2 cut(s) 72, 92
TfiI GAWTC 2 cut(s) 220, 547
Tru1I TTAA 2 cut(s) 282, 543
Tru9I TTAA 2 cut(s) 282, 543
TscAI CASTG 1 cut(s) 230
TseI GCWGC 1 cut(s) 498
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 1 cut(s) 230
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 3 cut(s) 50, 374, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.