Rh1AG350000

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008278
Physical Location & Seq
Forward (+)
58703253 .. 58704997
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG350000.1

Sequence Viewer

Length: 393 bp
ATGCCTGATCTAGTTACTGGCGAAGGTGAGGATGATAATGTGGATGATGATGGTAATGAACACGCCAATCAATCGAGCATCCCATTGGTCGTGAGCGTCTCCAAGGGTAGTGGCGCGCCTATTCTAGAGTTCAGCTGCAATGCCTTCCCTGATGAGATTGCAATTGAGAGCTTGATTGTTAAGAATCCTGATATTTCTGAGGATCAAATCGCCTACGAGGGGCCTGACTTCCATGATTTGGATGAGAATCTCCAGAAGTCCTTCCACAAGTACTTGGAGATTAGGGGAATCAAGCCTAGCACAACCAATTTCTTGCATGAGTACATGATCAATAAAGACAGCAGGGAATATAAGAACTGGTTGAAGAAACTTAAGCAGTTCGTTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

4.48

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 11 - 128 1.2e-34 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 1 cut(s) 116
AclWI GGATC 1 cut(s) 210
AfaI GTAC 2 cut(s) 272, 323
AfiI CCNNNNNNNGG 2 cut(s) 219, 238
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 364, 386
AluBI AGCT 2 cut(s) 135, 171
AluI AGCT 2 cut(s) 135, 171
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 210
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 135
AscI GGCGCGCC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 116, 118
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 38
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 44
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 3 cut(s) 11, 125, 297
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmcAI AGTACT 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 238
Bse1I ACTGG 2 cut(s) 22, 362
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 37, 49, 78, 247
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 219, 238
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 22, 362
BsePI GCGCGC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 219, 238
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 3 cut(s) 7, 202, 327
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 2 cut(s) 22, 362
BssECI CCNNGG 1 cut(s) 102
BssHII GCGCGC 1 cut(s) 114
BssMI GATC 3 cut(s) 7, 202, 327
BssT1I CCWWGG 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 4 cut(s) 37, 49, 78, 247
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 2 cut(s) 116, 118
BstKTI GATC 3 cut(s) 10, 205, 330
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 7, 202, 327
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 4 cut(s) 37, 49, 78, 247
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 2 cut(s) 116, 118
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 271, 322
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 3 cut(s) 233, 317, 325
CviJI RGCY 4 cut(s) 135, 171, 223, 295
CviKI_1 RGCY 4 cut(s) 135, 171, 223, 295
CviQI GTAC 2 cut(s) 271, 322
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 9, 204, 329
DpnII GATC 3 cut(s) 7, 202, 327
Eco130I CCWWGG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 3 cut(s) 236, 320, 328
FaiI YATR 4 cut(s) 234, 318, 326, 351
FatI CATG 3 cut(s) 232, 316, 324
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 4 cut(s) 44, 56, 65, 254
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 3 cut(s) 11, 125, 297
GlaI GCGC 2 cut(s) 115, 117
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 116, 118
Hin1II CATG 3 cut(s) 236, 320, 328
Hin6I GCGC 2 cut(s) 114, 116
HinP1I GCGC 2 cut(s) 114, 116
HinfI GANTC 3 cut(s) 184, 247, 288
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 91, 125, 188, 253, 386
HpyAV CCTTC 3 cut(s) 17, 154, 271
HpyCH4V TGCA 3 cut(s) 138, 161, 316
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 236, 320, 328
HspAI GCGC 2 cut(s) 114, 116
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 7, 202, 327
LpnPI CCDG 8 cut(s) 3, 18, 162, 201, 237, 266, 328, 343
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 87
MaeI CTAG 3 cut(s) 11, 125, 297
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 9, 204, 329
MboI GATC 3 cut(s) 7, 202, 327
MboII GAAGA 1 cut(s) 376
MfeI CAATTG 1 cut(s) 162
MluCI AATT 2 cut(s) 162, 307
MnlI CCTC 3 cut(s) 22, 193, 211
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 3 cut(s) 180, 372, 391
MspA1I CMGCKG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 371
MunI CAATTG 1 cut(s) 162
MvnI CGCG 1 cut(s) 116
NdeII GATC 3 cut(s) 7, 202, 327
NlaIII CATG 3 cut(s) 236, 320, 328
NlaIV GGNNCC 1 cut(s) 222
PalAI GGCGCGCC 1 cut(s) 114
PauI GCGCGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 184, 247, 288
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 221
PteI GCGCGC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 135
RsaI GTAC 2 cut(s) 272, 323
RsaNI GTAC 2 cut(s) 271, 322
SaqAI TTAA 3 cut(s) 180, 372, 391
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 3 cut(s) 7, 202, 327
Sau96I GGNCC 1 cut(s) 221
ScaI AGTACT 1 cut(s) 272
SetI ASST 3 cut(s) 28, 137, 173
SfaNI GCATC 1 cut(s) 87
SgsI GGCGCGCC 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 162, 307
SspMI CTAG 3 cut(s) 11, 125, 297
StyI CCWWGG 1 cut(s) 102
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 162, 307
TatI WGTACW 2 cut(s) 270, 321
TfiI GAWTC 3 cut(s) 184, 247, 288
Tru1I TTAA 3 cut(s) 180, 372, 391
Tru9I TTAA 3 cut(s) 180, 372, 391
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 371
XbaI TCTAGA 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 3 cut(s) 11, 125, 297
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.