AT3G55605

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008278
Physical Location & Seq
Forward (+)
20622607 .. 20624051
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55605.1

Sequence Viewer

Length: 777 bp
ATGGGTTTCGCTTTGTGCATTCGTAGATCAGCTTCTACTTTAGCTTCCGTGTGTGGTCGTGTGGCTCGAGCTCAAGCCGTCTCCGCTATCGTTAATCGCTCGTCTCTTGTTCCCAAGCCATCTCTGCTTCGGCCCTTCGTCTCTCGTGGCTTTCCTTATTCGACGGCCACTGAGCCGTTAAAGTCCGATCAGACGCTTATACAAGTGATTGACTCTGAGATCAAGGATTCTTTCGAAGCAGATGATCACGATGCGGATGAAGAGACGATAGACTCTAGTGACTTTCCTTTCAAAATCGAAGATAATCCTGGACACAGGACTGTGACATTGACTAGAGAATACAATGGAGAGCAGATTAAAGTAGAAGTAAGCATGCCTGGTCTTGCCATGGATGAAAATGAAGATGATGTGGATGACGATGAAGATGGTGATGGTCGTCATGAGAAATCGAATGAATCAAGCATTCCACTTGTTGTCACTGTGACCAAGAAGAGTGGACTTAGCCTAGAGTTTAGCTGCACTGCTTTCCCTGATGAGATTGTCATTGATGGTTTGTCTGTGAACCGTCCAGATGATTCTTCTGAAGAACAGTTGACTTATGATGGGCCAGATTTTCAGGAGTTGGATGAGAATATGCGCAAGTCGTTCCACAAGTTTCTAGAGACGAGAGGAATCAAAGCAAGCGCAACGGATTTCTTGTATGAGTACATGATGAAGAAAGATAGCAGAGAGTACTTACTATGGTTGAAGAAGCTCAAAACCTTTGTCCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

258

Amino Acids

29.01

Weight (kDa)

4.57

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 71 - 256 1.1e-49 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 638
AciI CCGC 2 cut(s) 84, 254
AcoI YGGCCR 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 2 cut(s) 707, 734
AgsI TTSAA 2 cut(s) 292, 748
AjnI CCWGG 2 cut(s) 307, 376
AluBI AGCT 5 cut(s) 32, 44, 71, 516, 754
AluI AGCT 5 cut(s) 32, 44, 71, 516, 754
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 5 cut(s) 85, 108, 145, 257, 656
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 131, 165, 605
ApeKI GCWGC 1 cut(s) 516
ArsI GACNNNNNNTTYG 1 cut(s) 750
AspLEI GCGC 2 cut(s) 639, 686
AspS9I GGNCC 2 cut(s) 132, 605
AsuHPI GGTGA 1 cut(s) 440
AsuII TTCGAA 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 66
BanII GRGCYC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 503
BccI CCATC 5 cut(s) 127, 419, 425, 542, 596
BceAI ACGGC 3 cut(s) 62, 160, 180
BciT130I CCWGG 2 cut(s) 309, 378
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 5 cut(s) 85, 108, 145, 257, 656
BfaI CTAG 4 cut(s) 276, 333, 506, 659
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 2 cut(s) 309, 378
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 132, 605
BmrFI CCNGG 2 cut(s) 309, 378
BmsI GCATC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 309, 378
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 4 cut(s) 262, 397, 418, 631
BseMII CTCAG 2 cut(s) 162, 207
BseXI GCAGC 1 cut(s) 503
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 3 cut(s) 133, 167, 607
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 66
BsmAI GTCTC 5 cut(s) 85, 108, 145, 257, 656
BsmBI CGTCTC 5 cut(s) 85, 108, 145, 257, 656
BsmI GAATGC 2 cut(s) 18, 462
BsnI GGCC 3 cut(s) 133, 167, 607
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 26, 187, 219, 244
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 84, 254
BspANI GGCC 3 cut(s) 133, 167, 607
BspCNI CTCAG 2 cut(s) 163, 208
BspHI TCATGA 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 26, 187, 219, 244
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 309, 378
Bst4CI ACNGT 4 cut(s) 322, 481, 566, 591
Bst6I CTCTTC 2 cut(s) 255, 485
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 374, 682
BstDEI CTNAG 3 cut(s) 171, 216, 500
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 4 cut(s) 262, 397, 418, 631
BstHHI GCGC 2 cut(s) 639, 686
BstKTI GATC 4 cut(s) 29, 190, 222, 247
BstMAI GTCTC 5 cut(s) 85, 108, 145, 257, 656
BstMBI GATC 4 cut(s) 26, 187, 219, 244
BstMWI GCNNNNNNNGC 2 cut(s) 83, 124
BstNI CCWGG 2 cut(s) 309, 378
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 307, 376
BstV1I GCAGC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 133, 167, 607
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 4 cut(s) 262, 397, 418, 631
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 168, 477, 519
Cac8I GCNNGC 2 cut(s) 374, 682
CciI TCATGA 1 cut(s) 439
CfoI GCGC 2 cut(s) 639, 686
Cfr13I GGNCC 2 cut(s) 132, 605
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 706, 733
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 4 cut(s) 373, 388, 440, 709
CviQI GTAC 2 cut(s) 706, 733
DdeI CTNAG 3 cut(s) 171, 216, 500
DpnI GATC 4 cut(s) 28, 189, 221, 246
DpnII GATC 4 cut(s) 26, 187, 219, 244
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 255, 485
EarI CTCTTC 2 cut(s) 255, 485
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 307, 376
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 5 cut(s) 85, 108, 145, 257, 656
FaeI CATG 4 cut(s) 376, 391, 443, 712
FaiI YATR 9 cut(s) 200, 374, 389, 441, 600, 635, 702, 710, 742
FatI CATG 4 cut(s) 372, 387, 439, 708
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 4 cut(s) 269, 404, 425, 638
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 4 cut(s) 276, 333, 506, 659
FspI TGCGCA 1 cut(s) 638
GlaI GCGC 2 cut(s) 638, 685
GluI GCNGC 1 cut(s) 517
HaeIII GGCC 3 cut(s) 133, 167, 607
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 639, 686
Hin1II CATG 4 cut(s) 376, 391, 443, 712
Hin6I GCGC 2 cut(s) 637, 684
HinP1I GCGC 2 cut(s) 637, 684
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 6 cut(s) 212, 227, 272, 455, 575, 672
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 497, 562, 594
Hpy188I TCNGA 4 cut(s) 187, 192, 217, 583
Hpy188III TCNNGA 5 cut(s) 248, 440, 569, 617, 659
Hpy8I GTNNAC 3 cut(s) 497, 562, 594
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 4 cut(s) 322, 481, 566, 591
HpyCH4V TGCA 2 cut(s) 18, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 124
HpyF3I CTNAG 3 cut(s) 171, 216, 500
Hsp92II CATG 4 cut(s) 376, 391, 443, 712
HspAI GCGC 2 cut(s) 637, 684
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 26, 187, 219, 244
LpnPI CCDG 9 cut(s) 294, 301, 321, 363, 390, 543, 582, 602, 621
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 1 cut(s) 241
MaeI CTAG 4 cut(s) 276, 333, 506, 659
MaeIII GTNAC 4 cut(s) 278, 322, 475, 481
MalI GATC 4 cut(s) 28, 189, 221, 246
MboI GATC 4 cut(s) 26, 187, 219, 244
MboII GAAGA 9 cut(s) 272, 311, 413, 434, 502, 570, 596, 727, 760
MhlI GDGCHC 1 cut(s) 73
MlyI GAGTC 2 cut(s) 206, 266
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 1 cut(s) 662
MseI TTAA 3 cut(s) 93, 179, 357
MspR9I CCNGG 2 cut(s) 309, 378
Mva1269I GAATGC 2 cut(s) 18, 462
MvaI CCWGG 2 cut(s) 309, 378
MwoI GCNNNNNNNGC 2 cut(s) 83, 124
NcoI CCATGG 1 cut(s) 387
NdeII GATC 4 cut(s) 26, 187, 219, 244
NlaIII CATG 4 cut(s) 376, 391, 443, 712
NmuCI GTSAC 4 cut(s) 278, 322, 475, 481
NsbI TGCGCA 1 cut(s) 638
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 234
PaeI GCATGC 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 66
PagI TCATGA 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PctI GAATGC 2 cut(s) 18, 462
PfeI GAWTC 4 cut(s) 227, 455, 575, 672
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 2 cut(s) 206, 266
PpsI GAGTC 2 cut(s) 206, 266
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 307, 376
PspGI CCWGG 2 cut(s) 307, 376
PspPI GGNCC 2 cut(s) 132, 605
PspXI VCTCGAGB 1 cut(s) 66
RsaI GTAC 2 cut(s) 707, 734
RsaNI GTAC 2 cut(s) 706, 733
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 93, 179, 357
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 4 cut(s) 26, 187, 219, 244
Sau96I GGNCC 2 cut(s) 132, 605
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 2 cut(s) 206, 266
ScrFI CCNGG 2 cut(s) 309, 378
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 34, 46, 73, 518, 756, 764
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 66, 72
SmoI CTYRAG 2 cut(s) 66, 72
SphI GCATGC 1 cut(s) 376
SsiI CCGC 2 cut(s) 84, 254
SspMI CTAG 4 cut(s) 276, 333, 506, 659
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 307, 376
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 322, 481, 566, 591
TaqI TCGA 5 cut(s) 67, 161, 234, 297, 449
TatI WGTACW 2 cut(s) 705, 732
TfiI GAWTC 4 cut(s) 227, 455, 575, 672
Tru1I TTAA 3 cut(s) 93, 179, 357
Tru9I TTAA 3 cut(s) 93, 179, 357
TscAI CASTG 3 cut(s) 175, 484, 526
TseFI GTSAC 4 cut(s) 278, 322, 475, 481
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 4 cut(s) 278, 322, 475, 481
TspDTI ATGAA 6 cut(s) 273, 408, 414, 435, 468, 728
TspGWI ACGGA 2 cut(s) 37, 704
TspRI CASTG 3 cut(s) 175, 484, 526
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 66
XspI CTAG 4 cut(s) 276, 333, 506, 659
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.