AT5G05990

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008278
Physical Location & Seq
Reverse (-)
1806761 .. 1807919
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05990.1

Sequence Viewer

Length: 780 bp
ATGGCGACTCTTGTACGTCGCGCAGCTTCTCGGTTTGTGGGAAGTTATTGGAAAAACCGTTCTTTCGTTTACTCATTGTTGGACCAGTCCGCTTCTGGCCGGAGGCGACATCTGACGCCGTCGGTTGACCGGAATGTTCCATTTACCACATCGACCAAAAAGAGAGCTTCTCCAACTGATCCGCTTCTTCGAATCATTGAAGAGGAGATTGGATACGCCGAGAAAGCTGATGATTATCATCGAGTTGAAGAAACTCCAAGTGGCTTCCCTTTCGAAATGGAAGACAAACCAGGAGGGAAGATTGTGACATTGACTAGAGAATATGAAGGAGAGACTGTTAAAGTTGAAGTACACATGACTAATCTTGTGACTGGTGACAAAGAAGATGATGAAGATGATGAGGAAGAAGCAGAGAATGAAGAAGATGAAGATGAGGATAAGCCATTGAAGCCTAAGCAATCGAATGTGCCTCTCTTAGTAACTCTTTCCAAGAAGACAGGACCAAGTTTGGAATTTAGATGTACTGCTTTTCCAGACAGGATTGCGATCAAGGACATGTGGGTTACATTTCCTGATGATCCTTCCAAAGATGAGCTTGCTTATGAAGGACCTTCCTTCAGGGTTTTGGATGAAAAGCTAAGGAAGGCTTTCCATAGGTACATTGAGATTAGAGGGATAAAGCCGAGCATGATCAACTTCTTGCACGAGTACATGATCAACAAGGATAGTAGAGAGCACTTACTGTGGTTGAAATCTCTCAAGAACTTTGTCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

259

Amino Acids

30.07

Weight (kDa)

5.36

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 66 - 257 2e-49 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 90, 182
AclWI GGATC 2 cut(s) 173, 572
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 5 cut(s) 15, 351, 523, 659, 710
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 5 cut(s) 200, 248, 347, 448, 751
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AloI GAACNNNNNNTCC 2 cut(s) 43, 75
AluBI AGCT 5 cut(s) 26, 167, 227, 595, 637
AluI AGCT 5 cut(s) 26, 167, 227, 595, 637
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 2 cut(s) 173, 572
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 82, 500, 608
AsuHPI GGTGA 1 cut(s) 386
AsuII TTCGAA 2 cut(s) 190, 273
AvaII GGWCC 3 cut(s) 82, 500, 608
BauI CACGAG 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 288, 500
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 206
BclI TGATCA 2 cut(s) 690, 714
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 315
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 3 cut(s) 82, 500, 608
BmgT120I GGNCC 3 cut(s) 82, 500, 608
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 288, 500
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu10I CCTNAGC 2 cut(s) 453, 638
Bpu14I TTCGAA 2 cut(s) 190, 273
BpuEI CTTGAG 1 cut(s) 743
BsaBI GATNNNNATC 3 cut(s) 234, 237, 545
BsaHI GRCGYC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bse1I ACTGG 2 cut(s) 85, 376
Bse8I GATNNNNATC 3 cut(s) 234, 237, 545
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 3 cut(s) 234, 237, 545
BseNI ACTGG 2 cut(s) 85, 376
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 2 cut(s) 100, 130
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 99
Bsp119I TTCGAA 2 cut(s) 190, 273
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 5 cut(s) 178, 546, 577, 690, 714
BspACI CCGC 2 cut(s) 90, 182
BspANI GGCC 1 cut(s) 99
BspFNI CGCG 1 cut(s) 21
BspPI GGATC 2 cut(s) 173, 572
BspT104I TTCGAA 2 cut(s) 190, 273
BsrI ACTGG 2 cut(s) 85, 376
BssMI GATC 5 cut(s) 178, 546, 577, 690, 714
BssNI GRCGYC 1 cut(s) 116
BssSI CACGAG 1 cut(s) 704
Bst2BI CACGAG 1 cut(s) 704
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 59, 337, 744
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 116
BstBI TTCGAA 2 cut(s) 190, 273
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 3 cut(s) 453, 475, 638
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 181, 549, 580, 693, 717
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 5 cut(s) 178, 546, 577, 690, 714
BstMWI GCNNNNNNNGC 2 cut(s) 224, 448
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 2 cut(s) 288, 500
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 597
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 82, 500, 608
CseI GACGC 1 cut(s) 124
Csp6I GTAC 5 cut(s) 14, 350, 522, 658, 709
CviAII CATG 4 cut(s) 355, 556, 688, 712
CviQI GTAC 5 cut(s) 14, 350, 522, 658, 709
DdeI CTNAG 3 cut(s) 453, 475, 638
DpnI GATC 5 cut(s) 180, 548, 579, 692, 716
DpnII GATC 5 cut(s) 178, 546, 577, 690, 714
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 3 cut(s) 82, 500, 608
Eco57I CTGAAG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 358, 559, 691, 715
FaiI YATR 7 cut(s) 324, 356, 557, 603, 654, 689, 713
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 631, 663
FatI CATG 4 cut(s) 354, 555, 687, 711
FbaI TGATCA 2 cut(s) 690, 714
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 100, 130
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 4 cut(s) 358, 559, 691, 715
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 7, 192
HpaII CCGG 2 cut(s) 100, 130
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 70, 127, 352
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 533, 572, 760
Hpy8I GTNNAC 3 cut(s) 70, 127, 352
Hpy99I CGWCG 2 cut(s) 21, 124
HpyAV CCTTC 6 cut(s) 320, 591, 599, 621, 625, 637
HpyCH4III ACNGT 3 cut(s) 59, 337, 744
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 448
HpyF3I CTNAG 3 cut(s) 453, 475, 638
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 4 cut(s) 358, 559, 691, 715
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 2 cut(s) 690, 714
Kzo9I GATC 5 cut(s) 178, 546, 577, 690, 714
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 5 cut(s) 304, 367, 374, 478, 562
MalI GATC 5 cut(s) 180, 548, 579, 692, 716
MboI GATC 5 cut(s) 178, 546, 577, 690, 714
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 60, 197
MnlI CCTC 7 cut(s) 96, 196, 287, 394, 427, 480, 665
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 1 cut(s) 339
MspI CCGG 2 cut(s) 100, 130
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 224, 448
NdeII GATC 5 cut(s) 178, 546, 577, 690, 714
NlaIII CATG 4 cut(s) 358, 559, 691, 715
NmeAIII GCCGAG 2 cut(s) 244, 708
NmuCI GTSAC 3 cut(s) 304, 367, 374
NspI RCATGY 1 cut(s) 559
NspV TTCGAA 2 cut(s) 190, 273
PciI ACATGT 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 608
PscI ACATGT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 3 cut(s) 82, 500, 608
PspPPI RGGWCCY 1 cut(s) 608
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 5 cut(s) 15, 351, 523, 659, 710
RsaNI GTAC 5 cut(s) 14, 350, 522, 658, 709
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 5 cut(s) 178, 546, 577, 690, 714
Sau96I GGNCC 3 cut(s) 82, 500, 608
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 738
SetI ASST 8 cut(s) 19, 28, 169, 229, 597, 613, 639, 659
SfuI TTCGAA 2 cut(s) 190, 273
SinI GGWCC 3 cut(s) 82, 500, 608
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 1 cut(s) 512
SsiI CCGC 2 cut(s) 90, 182
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 59, 337, 744
TaiI ACGT 1 cut(s) 19
TaqI TCGA 5 cut(s) 152, 190, 241, 273, 461
TasI AATT 1 cut(s) 512
TatI WGTACW 3 cut(s) 349, 521, 708
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 3 cut(s) 304, 367, 374
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 3 cut(s) 304, 367, 374
TspDTI ATGAA 6 cut(s) 339, 405, 432, 441, 618, 645
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 3 cut(s) 82, 500, 608
XapI RAATTY 1 cut(s) 512
XceI RCATGY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.