Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035758.1

Orthogroup ID

OG0008278

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 535

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

attgaagaggttccgagtggtttcccttttaagatagaagatgagcctggatttcagactgtgaaactgaggagaacttatcaagatgaagagattcaagtggaagttcacatgcctgatctagttactggcgaaggtgaggatgatgatgtggatgatgatggtaacgaacacgccaatcaatcgagcatcccattggtcgtgagcgtctccaagggtagtggcgcgcctattctagagtttagctgcaatgctttccctgatgagattgcaattgagagcttgattgttaagaatcccgatacttctgaggatcaaatcgcctacgaggggcctgacttccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

4.05

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39790 AT2G39795 AT2G46190 AT3G55605 AT5G05990
fragaria_vesca	FvH4_7g23410
malus_domestica	MD00G1150700.v1.1 MD01G1140100.v1.1 MD07G1204400.v1.1 MD12G1094400.v1.1
prunus_persica	Prupe.2G240700_v2.0.a1
pyrus_communis	pycom01g16060 pycom07g19100
rosa_chinensis	RchiOBHm_Chr1g0368531
rosa_laevigata	RLG00000027205
rosa_multiflora	Rmu_sc0011394.1_g000008 Rmu_sc0035758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288460
rosa_rugosa	Rorug01G0342700
rosa_samantha	Rh1AG350000 Rh1BG313200 Rh1CG327900 Rh1DG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	227
AclWI	GGATC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	5, 98
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	246, 282
AluI	AGCT	2 cut(s)	246, 282
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	246
AscI	GGCGCGCC	1 cut(s)	225
Asp700I	GAANNNNTTC	2 cut(s)	9, 93
AspLEI	GCGC	2 cut(s)	227, 229
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	122, 236
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	12, 333
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	133, 343
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	3 cut(s)	148, 160, 189
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	59, 300
BseNI	ACTGG	2 cut(s)	133, 343
BsePI	GCGCGC	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	118, 313
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	60, 301
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	12, 333
BspPI	GGATC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	133, 343
BssECI	CCNNGG	1 cut(s)	213
BssHII	GCGCGC	1 cut(s)	225
BssMI	GATC	2 cut(s)	118, 313
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	68, 309
BstF5I	GGATG	3 cut(s)	148, 160, 189
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	227, 229
BstKTI	GATC	2 cut(s)	121, 316
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	118, 313
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	148, 160, 189
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	2 cut(s)	227, 229
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	196
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	4 cut(s)	46, 246, 282, 334
CviKI_1	RGCY	4 cut(s)	46, 246, 282, 334
DdeI	CTNAG	2 cut(s)	68, 309
DpnI	GATC	2 cut(s)	120, 315
DpnII	GATC	2 cut(s)	118, 313
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	3 cut(s)	155, 167, 176
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	2 cut(s)	122, 236
GlaI	GCGC	2 cut(s)	226, 228
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	334
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	227, 229
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	2 cut(s)	225, 227
HinP1I	GCGC	2 cut(s)	225, 227
HinfI	GANTC	2 cut(s)	94, 295
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	15, 57, 310
Hpy188III	TCNNGA	4 cut(s)	83, 202, 236, 299
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	249, 272
HpyF3I	CTNAG	2 cut(s)	68, 309
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	2 cut(s)	225, 227
Kzo9I	GATC	2 cut(s)	118, 313
LpnPI	CCDG	5 cut(s)	33, 60, 114, 129, 273
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	122, 236
MaeIII	GTNAC	2 cut(s)	124, 164
MalI	GATC	2 cut(s)	120, 315
MboI	GATC	2 cut(s)	118, 313
MboII	GAAGA	3 cut(s)	17, 50, 101
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	4 cut(s)	63, 133, 304, 322
MroXI	GAANNNNTTC	2 cut(s)	9, 93
MseI	TTAA	2 cut(s)	30, 291
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	227
NdeII	GATC	2 cut(s)	118, 313
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	12, 333
NspI	RCATGY	1 cut(s)	115
PalAI	GGCGCGCC	1 cut(s)	225
PauI	GCGCGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	9, 93
PfeI	GAWTC	2 cut(s)	94, 295
PkrI	GCNGC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	12, 333
PspPI	GGNCC	1 cut(s)	332
PteI	GCGCGC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	30, 291
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	118, 313
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	4 cut(s)	12, 139, 248, 284
SfaNI	GCATC	1 cut(s)	198
SgsI	GGCGCGCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	122, 236
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	94, 295
Tru1I	TTAA	2 cut(s)	30, 291
Tru9I	TTAA	2 cut(s)	30, 291
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	102
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	115
XmnI	GAANNNNTTC	2 cut(s)	9, 93
XspI	CTAG	2 cut(s)	122, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.