Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011394.1

Orthogroup ID

OG0008278

Physical Location & Seq

Genomic Coordinates Reverse (-)

31326 .. 32492

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011394.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggctttcacttccatccttcgcagatcggcctcatctctggccccactagccacccggctcgtccgcggccaccggaactaccacgccgccgtcatcaccgccataaaccactccagcttcgccggccggaagccctcttctctgagccctctggttccaaaccctcgctactattccaaggccgacgacagccttctccgagtcatcgacgccgagattcagtgcgccgaggagaccgatgatcaggagattgaagaggttccgagtggtttcccttttaagatagaagatgagcctggatttcagactgtgaaactgaggagaacttatcaagatgaagagattcaagtggaagttcacatgcctgatctagttactggcgaaggtaaggatgatgatgtggatgatgatggtaacgaacacgccaatcaatcgagcatcccattggtcgtgagcgtctccaagggtagtggcgcacctattctagagtttagctgcaatgctttccctgatgagattgcaattgagagcttggttgttaagaatcccgatacttctgacgatcaaatcccctacgaggggcctgacttccatgatttggatgagaatctccagaagtccttccacaagtacttggagattaggggaatcaagcccagcacaaccaatttcttgcatgagtacatgatcaataaagacagcagggaatataagaactggttgaagaaacttaagcagttcgttcaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

4.84

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39790 AT2G39795 AT2G46190 AT3G55605 AT5G05990
fragaria_vesca	FvH4_7g23410
malus_domestica	MD00G1150700.v1.1 MD01G1140100.v1.1 MD07G1204400.v1.1 MD12G1094400.v1.1
prunus_persica	Prupe.2G240700_v2.0.a1
pyrus_communis	pycom01g16060 pycom07g19100
rosa_chinensis	RchiOBHm_Chr1g0368531
rosa_laevigata	RLG00000027205
rosa_multiflora	Rmu_sc0011394.1_g000008 Rmu_sc0035758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288460
rosa_rugosa	Rorug01G0342700
rosa_samantha	Rh1AG350000 Rh1BG313200 Rh1CG327900 Rh1DG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	67, 69, 90, 102
AcoI	YGGCCR	2 cut(s)	70, 127
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	635, 686
AfiI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	257, 350, 727, 749
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	120, 498, 534
AluI	AGCT	3 cut(s)	120, 498, 534
Alw26I	GTCTC	2 cut(s)	230, 466
AoxI	GGCC	6 cut(s)	30, 42, 70, 127, 183, 584
ApeKI	GCWGC	1 cut(s)	498
Asp700I	GAANNNNTTC	3 cut(s)	261, 345, 623
AspLEI	GCGC	2 cut(s)	230, 479
AspS9I	GGNCC	2 cut(s)	43, 584
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	2 cut(s)	23, 407
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	2 cut(s)	244, 690
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	230, 466
BfaI	CTAG	3 cut(s)	50, 374, 488
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	3 cut(s)	70, 90, 499
BlsI	GCNGC	3 cut(s)	71, 91, 500
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	58, 300
BmgT120I	GGNCC	2 cut(s)	43, 584
BmiI	GGNNCC	4 cut(s)	45, 159, 264, 585
BmrFI	CCNGG	2 cut(s)	58, 300
BmsI	GCATC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	100, 599
BpuMI	CCSGG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	67, 180, 231, 465
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	385, 725
Bse3DI	GCAATG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	67, 180, 231, 465
BseGI	GGATG	5 cut(s)	15, 400, 412, 441, 610
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	137, 311
BseNI	ACTGG	2 cut(s)	385, 725
BseRI	GAGGAG	2 cut(s)	248, 337
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	485
BseYI	CCCAGC	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	6 cut(s)	32, 44, 72, 129, 185, 586
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	4 cut(s)	58, 76, 126, 130
BslI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
BsmAI	GTCTC	2 cut(s)	230, 466
BsmBI	CGTCTC	1 cut(s)	466
BsnI	GGCC	6 cut(s)	32, 44, 72, 129, 185, 586
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	26, 244, 370, 565, 690
BspACI	CCGC	4 cut(s)	67, 69, 90, 102
BspANI	GGCC	6 cut(s)	32, 44, 72, 129, 185, 586
BspCNI	CTCAG	2 cut(s)	138, 312
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	45, 159, 264, 585
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	385, 725
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	67, 180, 231, 465
BssMI	GATC	5 cut(s)	26, 244, 370, 565, 690
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	180, 465
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	3 cut(s)	145, 252, 336
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	146, 320
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	5 cut(s)	15, 400, 412, 441, 610
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	230, 479
BstKTI	GATC	5 cut(s)	29, 247, 373, 568, 693
BstMAI	GTCTC	2 cut(s)	230, 466
BstMBI	GATC	5 cut(s)	26, 244, 370, 565, 690
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 126
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	56, 298
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	32, 44, 72, 129, 185, 586
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	5 cut(s)	15, 400, 412, 441, 610
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	2 cut(s)	230, 479
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	43, 584
Cfr42I	CCGCGG	1 cut(s)	70
CseI	GACGC	2 cut(s)	221, 448
Csp6I	GTAC	2 cut(s)	634, 685
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	364, 596, 680, 688
CviQI	GTAC	2 cut(s)	634, 685
DdeI	CTNAG	2 cut(s)	146, 320
DpnI	GATC	5 cut(s)	28, 246, 372, 567, 692
DpnII	GATC	5 cut(s)	26, 244, 370, 565, 690
EaeI	YGGCCR	2 cut(s)	70, 127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	145, 252, 336
EarI	CTCTTC	3 cut(s)	145, 252, 336
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	180, 465
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	180, 465
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	2 cut(s)	180, 465
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	367, 599, 683, 691
FaiI	YATR	6 cut(s)	107, 365, 597, 681, 689, 714
FatI	CATG	4 cut(s)	363, 595, 679, 687
FbaI	TGATCA	2 cut(s)	244, 690
Fnu4HI	GCNGC	3 cut(s)	70, 90, 499
FokI	GGATG	5 cut(s)	2, 407, 419, 428, 617
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	70, 90, 499
FspBI	CTAG	3 cut(s)	50, 374, 488
GlaI	GCGC	2 cut(s)	229, 478
GluI	GCNGC	3 cut(s)	70, 90, 499
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	100, 599
HaeIII	GGCC	6 cut(s)	32, 44, 72, 129, 185, 586
HapII	CCGG	4 cut(s)	58, 76, 126, 130
HgaI	GACGC	2 cut(s)	221, 448
HhaI	GCGC	2 cut(s)	230, 479
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	367, 599, 683, 691
Hin6I	GCGC	2 cut(s)	228, 477
HinP1I	GCGC	2 cut(s)	228, 477
HinfI	GANTC	6 cut(s)	204, 220, 346, 547, 610, 651
HpaII	CCGG	4 cut(s)	58, 76, 126, 130
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	5 cut(s)	147, 203, 267, 309, 562
Hpy188III	TCNNGA	7 cut(s)	248, 335, 454, 488, 551, 616, 749
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	2 cut(s)	191, 215
HpyAV	CCTTC	4 cut(s)	29, 206, 380, 634
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	501, 524, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 126
HpyF3I	CTNAG	2 cut(s)	146, 320
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	367, 599, 683, 691
HspAI	GCGC	2 cut(s)	228, 477
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	244, 690
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	26, 244, 370, 565, 690
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	3 cut(s)	50, 374, 488
MaeIII	GTNAC	2 cut(s)	376, 416
MalI	GATC	5 cut(s)	28, 246, 372, 567, 692
MboI	GATC	5 cut(s)	26, 244, 370, 565, 690
MboII	GAAGA	5 cut(s)	132, 269, 302, 353, 739
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	525, 670
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	43, 148, 162, 177, 226, 253, 315, 574
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	3 cut(s)	261, 345, 623
MseI	TTAA	4 cut(s)	282, 543, 735, 754
MspA1I	CMGCKG	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	4 cut(s)	58, 76, 126, 130
MspR9I	CCNGG	2 cut(s)	58, 300
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	50, 126
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	5 cut(s)	26, 244, 370, 565, 690
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	4 cut(s)	367, 599, 683, 691
NlaIV	GGNNCC	4 cut(s)	45, 159, 264, 585
NmeAIII	GCCGAG	2 cut(s)	241, 256
NspI	RCATGY	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	3 cut(s)	261, 345, 623
PfeI	GAWTC	5 cut(s)	220, 346, 547, 610, 651
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	71, 91, 500
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	4 cut(s)	45, 159, 264, 585
PspPI	GGNCC	2 cut(s)	43, 584
RsaI	GTAC	2 cut(s)	635, 686
RsaNI	GTAC	2 cut(s)	634, 685
SacII	CCGCGG	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	282, 543, 735, 754
SatI	GCNGC	3 cut(s)	70, 90, 499
Sau3AI	GATC	5 cut(s)	26, 244, 370, 565, 690
Sau96I	GGNCC	2 cut(s)	43, 584
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	58, 300
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	6 cut(s)	122, 264, 391, 484, 500, 536
SfaNI	GCATC	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	2 cut(s)	525, 670
SsiI	CCGC	4 cut(s)	67, 69, 90, 102
SspMI	CTAG	3 cut(s)	50, 374, 488
StyD4I	CCNGG	2 cut(s)	56, 298
StyI	CCWWGG	2 cut(s)	180, 465
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	210, 437
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	525, 670
TatI	WGTACW	2 cut(s)	633, 684
TauI	GCSGC	2 cut(s)	72, 92
TfiI	GAWTC	5 cut(s)	220, 346, 547, 610, 651
Tru1I	TTAA	4 cut(s)	282, 543, 735, 754
Tru9I	TTAA	4 cut(s)	282, 543, 735, 754
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	601
Vha464I	CTTAAG	1 cut(s)	734
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	367
XmnI	GAANNNNTTC	3 cut(s)	261, 345, 623
XspI	CTAG	3 cut(s)	50, 374, 488
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.