Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008278

Physical Location & Seq

Genomic Coordinates Forward (+)

18971769 .. 18972804

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTTTTCGCTTGGTGCAGGTCAGCATCTAAGCTTGCTTCCGTTTGTGGTCGATTCCTATCTATCTCCGCCGTTGTGAGTTTGGCTCCGCCGCGTCCCATGGTCTCTCGTGGCTTTCTTTCCTCGACGGCTATTGATGATCGCCAGAGCTCCAACCAAATGTTTCTTTATATGCTCTGCTCTGGCTTTATACCACCTAAAGTTGATGATGAGCCGACTCCAGGAATAAACCCTTACACAATTGAAGATGATGGAGGTAAGACTGTGACATTGACTAGAGACTACCAAGAGGAATATATTGTAGTTGTAGCAGGTATGCCCTATGAAGAATATGATGGATTATGTTTTCCACTAACTGTGAATTTTACCAAGAAGATCAGTGGCCTCAGCCTCGAGTTTAGGTGCACGGCTTTTCCTCTTAATGGTACTTCCATGAATGGTGTATCTGTGATTAGTCGGGGGAATTATTGGGAGGATCAACGGCCGTGTGATTTAAACGTGGATTACAGACACAGTTATTTGCGTATGATATTTGATTATAGCCCAAAATTTGCCTTGTACAAGTACATGACGACAGGCACGCGAAAGTACGTGGTATGGTTGAAACATCTTAAGAAGTTTTTGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

210

Amino Acids

23.93

Weight (kDa)

7.55

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39790 AT2G39795 AT2G46190 AT3G55605 AT5G05990
fragaria_vesca	FvH4_7g23410
malus_domestica	MD00G1150700.v1.1 MD01G1140100.v1.1 MD07G1204400.v1.1 MD12G1094400.v1.1
prunus_persica	Prupe.2G240700_v2.0.a1
pyrus_communis	pycom01g16060 pycom07g19100
rosa_chinensis	RchiOBHm_Chr1g0368531
rosa_laevigata	RLG00000027205
rosa_multiflora	Rmu_sc0011394.1_g000008 Rmu_sc0035758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288460
rosa_rugosa	Rorug01G0342700
rosa_samantha	Rh1AG350000 Rh1BG313200 Rh1CG327900 Rh1DG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	9, 302
AccII	CGCG	2 cut(s)	94, 583
AciI	CCGC	3 cut(s)	69, 89, 92
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	361, 548
AfaI	GTAC	4 cut(s)	427, 560, 566, 590
AfiI	CCNNNNNNNGG	2 cut(s)	221, 422
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	245, 604
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	34, 150
AluI	AGCT	2 cut(s)	34, 150
Alw21I	GWGCWC	2 cut(s)	152, 407
Alw26I	GTCTC	2 cut(s)	109, 273
Alw44I	GTGCAC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	382, 482
ApaLI	GTGCAC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	361, 548
AvaI	CYCGRG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	152, 407
BbvCI	CCTCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	245, 329
BceAI	ACGGC	5 cut(s)	56, 144, 423, 469, 497
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	109, 273
BfaI	CTAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	611
BfuAI	ACCTGC	2 cut(s)	9, 302
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 422
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	221, 422
BseMII	CTCAG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	94, 583
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	2 cut(s)	384, 484
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	152, 407
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	221, 422
BsmAI	GTCTC	2 cut(s)	109, 273
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	384, 484
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	152, 407
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	139, 375, 475
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	69, 89, 92
BspANI	GGCC	2 cut(s)	384, 484
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	2 cut(s)	94, 583
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	2 cut(s)	9, 302
BspPI	GGATC	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	139, 375, 475
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	265, 358, 515
BstAFI	CTTAAG	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	36, 581
BstDEI	CTNAG	2 cut(s)	30, 386
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	2 cut(s)	94, 583
BstKTI	GATC	3 cut(s)	142, 378, 478
BstMAI	GTCTC	2 cut(s)	109, 273
BstMBI	GATC	3 cut(s)	139, 375, 475
BstMCI	CGRYCG	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	407
BstUI	CGCG	2 cut(s)	94, 583
BstZI	CGGCCG	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	384, 484
BtgI	CCRYGG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	2 cut(s)	9, 302
Cac8I	GCNNGC	2 cut(s)	36, 581
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	426, 559, 565, 589
CviAII	CATG	3 cut(s)	100, 433, 568
CviQI	GTAC	4 cut(s)	426, 559, 565, 589
DdeI	CTNAG	2 cut(s)	30, 386
DpnI	GATC	3 cut(s)	141, 377, 477
DpnII	GATC	3 cut(s)	139, 375, 475
DraI	TTTAAA	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	482
EagI	CGGCCG	1 cut(s)	482
EciI	GGCGGA	2 cut(s)	58, 78
Ecl136II	GAGCTC	1 cut(s)	150
EclXI	CGGCCG	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	3 cut(s)	103, 436, 571
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	99, 432, 567
Fnu4HI	GCNGC	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	384, 484
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	103, 436, 571
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	2 cut(s)	54, 217
Hpy166II	GTNNAC	1 cut(s)	405
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	265, 358, 515
HpyCH4IV	ACGT	2 cut(s)	498, 591
HpyCH4V	TGCA	2 cut(s)	18, 405
HpyF3I	CTNAG	2 cut(s)	30, 386
HpySE526I	ACGT	2 cut(s)	498, 591
Hsp92II	CATG	3 cut(s)	103, 436, 571
Kzo9I	GATC	3 cut(s)	139, 375, 475
LmnI	GCTCC	2 cut(s)	91, 155
LpnPI	CCDG	7 cut(s)	4, 158, 168, 207, 234, 297, 561
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	498, 591
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	141, 377, 477
MboI	GATC	3 cut(s)	139, 375, 475
MboII	GAAGA	3 cut(s)	257, 338, 385
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	152, 407
MluCI	AATT	4 cut(s)	240, 361, 463, 548
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	133, 248, 283, 395, 401, 426, 466, 619
MseI	TTAA	3 cut(s)	420, 494, 612
MspCI	CTTAAG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	2 cut(s)	94, 583
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	139, 375, 475
NlaIII	CATG	3 cut(s)	103, 436, 571
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	87
PspXI	VCTCGAGB	1 cut(s)	392
RsaI	GTAC	4 cut(s)	427, 560, 566, 590
RsaNI	GTAC	4 cut(s)	426, 559, 565, 589
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	420, 494, 612
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	3 cut(s)	139, 375, 475
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	152, 407
SetI	ASST	9 cut(s)	23, 36, 152, 199, 259, 316, 404, 501, 594
SfaNI	GCATC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	392, 611
SmoI	CTYRAG	2 cut(s)	392, 611
Sse9I	AATT	4 cut(s)	240, 361, 463, 548
SsiI	CCGC	3 cut(s)	69, 89, 92
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	265, 358, 515
TaiI	ACGT	2 cut(s)	501, 594
TaqI	TCGA	3 cut(s)	52, 125, 393
TasI	AATT	4 cut(s)	240, 361, 463, 548
TatI	WGTACW	2 cut(s)	558, 564
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	420, 494, 612
Tru9I	TTAA	3 cut(s)	420, 494, 612
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	339, 449
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	361, 548
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.